BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0014.p
         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB88979.1| putative DNA-binding protein [Bacillus cereus]         95   4e-19
emb|CAB82880.1| putative DNA binding protein [Streptomyces coeli...    76   2e-13
ref|NP_639838.1| putative DNA-binding protein, MmyB [Streptomyce...    76   2e-13
ref|NP_902455.1| conserved hypothetical protein [Chromobacterium...    75   4e-13
ref|NP_826659.1| putative DNA-binding protein [Streptomyces aver...    75   4e-13

>dbj|BAB88979.1| putative DNA-binding protein [Bacillus cereus]
          Length = 106

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 47/59 (79%)

Query: 1  LRREEVAQLAGVSNTWYTWLEQGRDIKVSPSVLDCIAGALQLTKDERSYLFALALENGS 59
          LRREEVAQLAGVS TWYTWLEQGRDIKVS  VLDCI+ ALQL  DE  YL+ LA E  S
Sbjct: 39 LRREEVAQLAGVSTTWYTWLEQGRDIKVSTIVLDCISKALQLNNDETDYLYDLAFETNS 97


>emb|CAB82880.1| putative DNA binding protein [Streptomyces coelicolor A3(2)]
 dbj|BAC76311.1| putative DNA-binding protein MmyB [Streptomyces violaceoruber]
          Length = 286

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 48/67 (71%), Gaps = 7/67 (10%)

Query: 1   LRREEVAQLAGVSNTWYTWLEQGRDIKVSPSVLDCIAGALQLTKDERSYLFALALENGSG 60
           LRREEVA +AGVS +WYTWLEQGRDIKVS  VL+ I+ AL+L   ER++L+ LA  N   
Sbjct: 52  LRREEVAVIAGVSASWYTWLEQGRDIKVSDGVLNAISQALRLDDTERAHLYRLAGVN--- 108

Query: 61  AAPYPPQ 67
               PPQ
Sbjct: 109 ----PPQ 111


>ref|NP_639838.1| putative DNA-binding protein, MmyB [Streptomyces coelicolor A3(2)]
 emb|CAC36754.1| putative DNA-binding protein, MmyB [Streptomyces coelicolor A3(2)]
          Length = 313

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 48/67 (71%), Gaps = 7/67 (10%)

Query: 1   LRREEVAQLAGVSNTWYTWLEQGRDIKVSPSVLDCIAGALQLTKDERSYLFALALENGSG 60
           LRREEVA +AGVS +WYTWLEQGRDIKVS  VL+ I+ AL+L   ER++L+ LA  N   
Sbjct: 52  LRREEVAVIAGVSASWYTWLEQGRDIKVSDGVLNAISQALRLDDTERAHLYRLAGVN--- 108

Query: 61  AAPYPPQ 67
               PPQ
Sbjct: 109 ----PPQ 111


>ref|NP_902455.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
 gb|AAQ60453.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 276

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 54/85 (63%), Gaps = 9/85 (10%)

Query: 1   LRREEVAQLAGVSNTWYTWLEQGRDIKVSPSVLDCIAGALQLTKDERSYLFALA-LENGS 59
           LRREEVAQLAG+S TW TWLEQGR   VS   L  +A ALQL+  E  YLF LA L+N  
Sbjct: 56  LRREEVAQLAGISATWLTWLEQGRSESVSAQTLSRLAAALQLSGAETDYLFDLAGLKN-- 113

Query: 60  GAAPYPPQEELSVINPSLQKILHEL 84
                 PQE+ +  NP  ++IL E+
Sbjct: 114 ------PQEKRADANPQAREILEEM 132


>ref|NP_826659.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680]
 dbj|BAC73194.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680]
          Length = 297

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 1   LRREEVAQLAGVSNTWYTWLEQGRDIKVSPSVLDCIAGALQLTKDERSYLFALALENGSG 60
           LRREEVAQL+GV  TWYTWLEQGR I  SP VLD +A  L+L   ER +L+ LA      
Sbjct: 40  LRREEVAQLSGVGVTWYTWLEQGRPINASPQVLDAVARTLRLDHPEREHLYHLA------ 93

Query: 61  AAPYPPQEE--LSVINPSLQKILHEL 84
             PY P        I P +Q I+  L
Sbjct: 94  EVPYEPGPAGLAQQIEPEIQDIIDAL 119


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 138,512,886
Number of extensions: 4946715
Number of successful extensions: 15166
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 15163
Number of HSP's successfully gapped: 47
Length of query: 100
Length of database: 757,237,578
Length adjustment: 67
Effective length of query: 33
Effective length of database: 575,325,945
Effective search space: 18985756185
Effective search space used: 18985756185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)