BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0010.p (127 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_843894.1| diaminopimelate decarboxylase [Bacillus anthrac... 181 6e-45 ref|NP_977863.1| diaminopimelate decarboxylase [Bacillus cereus ... 180 8e-45 ref|NP_831199.1| Diaminopimelate decarboxylase [Bacillus cereus ... 179 2e-44 ref|NP_655319.1| Orn_Arg_deC_N, Pyridoxal-dependent decarboxylas... 178 3e-44 ref|NP_390219.1| diaminopimelate decarboxylase [Bacillus subtili... 165 4e-40 >ref|NP_843894.1| diaminopimelate decarboxylase [Bacillus anthracis str. Ames] gb|AAP25380.1| diaminopimelate decarboxylase [Bacillus anthracis str. Ames] Length = 438 Score = 181 bits (458), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 83/121 (68%), Positives = 96/121 (79%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 M+LHGTSRIN HLEIGGCD T+L +YGTPLY+ DE+ +R +CR + AF SG +Q Sbjct: 1 MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQ 60 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAF M MCR+A EE +SLDVVS GELYTALQAGFPA RIHFHGNNKT +EI MA Sbjct: 61 VAYASKAFLCMEMCRVAREENMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMA 120 Query: 121 I 121 + Sbjct: 121 L 121 >ref|NP_977863.1| diaminopimelate decarboxylase [Bacillus cereus ATCC 10987] gb|AAS40471.1| diaminopimelate decarboxylase [Bacillus cereus ATCC 10987] Length = 438 Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 83/121 (68%), Positives = 96/121 (79%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 M+LHGTSRIN HLEIGGCD T+L +YGTPLY+ DE+ +R +CR + AF SG +Q Sbjct: 1 MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQ 60 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAF M MCR+A EE +SLDVVS GELYTALQAGFPA RIHFHGNNKT +EI MA Sbjct: 61 VAYASKAFLCMEMCRVAREENMSLDVVSGGELYTALQAGFPASRIHFHGNNKTDEEIVMA 120 Query: 121 I 121 + Sbjct: 121 L 121 >ref|NP_831199.1| Diaminopimelate decarboxylase [Bacillus cereus ATCC 14579] gb|AAP08400.1| Diaminopimelate decarboxylase [Bacillus cereus ATCC 14579] Length = 438 Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 83/121 (68%), Positives = 95/121 (78%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 M+LHGTSRIN HLEIGGCD T+L +YGTPLY+ DE +R +CR + AF SG +Q Sbjct: 1 MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEGSIRGKCRAFHRAFKESGFSYQ 60 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAF M MCR+A EE +SLDVVS GELYTALQAGFPA RIHFHGNNKT +EI MA Sbjct: 61 VAYASKAFLCMEMCRVAREENMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMA 120 Query: 121 I 121 + Sbjct: 121 L 121 >ref|NP_655319.1| Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain [Bacillus anthracis A2012] Length = 438 Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 82/121 (67%), Positives = 95/121 (78%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 M+LHGTSRIN HLEIGGCD T+L +YGTPLY+ DE+ +R +CR + AF SG +Q Sbjct: 1 MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQ 60 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAF M MCR+A EE +SLDVVS GELYTALQAGFPA RIHFHGNNK +EI MA Sbjct: 61 VAYASKAFLCMEMCRVAREENMSLDVVSGGELYTALQAGFPASRIHFHGNNKXEEEIVMA 120 Query: 121 I 121 + Sbjct: 121 L 121 >ref|NP_390219.1| diaminopimelate decarboxylase [Bacillus subtilis] pir||JU0471 diaminopimelate decarboxylase (EC 4.1.1.20) lysA - Bacillus subtilis gb|AAA67473.1| diaminopimelate decarboxylase emb|CAB14270.1| diaminopimelate decarboxylase [Bacillus subtilis subsp. subtilis str. 168] Length = 439 Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 79/121 (65%), Positives = 95/121 (78%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 MFLHGTSR N HLEIGG D L +YGTPLY+ D L+R R + + +AF ++GL Q Sbjct: 1 MFLHGTSRQNQHGHLEIGGVDALYLAEKYGTPLYVYDVALIRERAKSFKQAFISAGLKAQ 60 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAFS +AM +LA+EEGLSLDVVS GELYTA+ AGFPAERIHFHGNNK+ +E+ MA Sbjct: 61 VAYASKAFSSVAMIQLAEEEGLSLDVVSGGELYTAVAAGFPAERIHFHGNNKSREELRMA 120 Query: 121 I 121 + Sbjct: 121 L 121 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 176,385,640 Number of extensions: 6017768 Number of successful extensions: 14392 Number of sequences better than 1.0e-05: 257 Number of HSP's gapped: 14278 Number of HSP's successfully gapped: 257 Length of query: 127 Length of database: 757,237,578 Length adjustment: 90 Effective length of query: 37 Effective length of database: 512,878,668 Effective search space: 18976510716 Effective search space used: 18976510716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)