BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0009.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_655319.1| Orn_Arg_deC_N, Pyridoxal-dependent decarboxylas... 393 e-108 ref|NP_843894.1| diaminopimelate decarboxylase [Bacillus anthrac... 393 e-108 ref|NP_977863.1| diaminopimelate decarboxylase [Bacillus cereus ... 390 e-107 ref|NP_831199.1| Diaminopimelate decarboxylase [Bacillus cereus ... 389 e-107 ref|NP_390219.1| diaminopimelate decarboxylase [Bacillus subtili... 368 e-100 >ref|NP_655319.1| Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain [Bacillus anthracis A2012] Length = 438 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/298 (63%), Positives = 228/298 (76%), Gaps = 1/298 (0%) Query: 1 VELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXX 60 +EL +L +A++ VNIL+RVTPGVEAH H Y +TGQ DSKFGF + NG Sbjct: 134 LELEILHDLAVQHGKFVNILIRVTPGVEAHTHE-YITTGQDDSKFGFGVSNGQAMQAIEL 192 Query: 61 XXXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIR 120 +SN +LG+HSHIGSQIFET GF A+E + F +V+E V+N+GGGFGIR Sbjct: 193 ALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVVKVLNVGGGFGIR 252 Query: 121 YVEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEI 180 Y E DTPL + YV A+T AV+ FT + LP+IWVEPGRSIVGDAGTTLYTVG+ K+I Sbjct: 253 YTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDI 312 Query: 181 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVE 240 PG+RKYV+VDGGMTDN RPALY ++YEA+LANR + NEETVSIAGKCCESGDMLIWD+ Sbjct: 313 PGIRKYVSVDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKCCESGDMLIWDIT 372 Query: 241 LPKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIAND 298 LPKV S DLLA++CTGAY YSMA+NYNRIRRPAVVFV+ G S +VV RE++++II ND Sbjct: 373 LPKVASADLLAISCTGAYGYSMANNYNRIRRPAVVFVKGGTSQIVVERETYENIIGND 430 >ref|NP_843894.1| diaminopimelate decarboxylase [Bacillus anthracis str. Ames] gb|AAP25380.1| diaminopimelate decarboxylase [Bacillus anthracis str. Ames] Length = 438 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/298 (63%), Positives = 228/298 (76%), Gaps = 1/298 (0%) Query: 1 VELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXX 60 +EL +L +A++ VNIL+RVTPGVEAH H Y +TGQ DSKFGF + NG Sbjct: 134 LELEILHDLAVQHGKFVNILIRVTPGVEAHTHE-YITTGQDDSKFGFGVSNGQAMQAIEL 192 Query: 61 XXXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIR 120 +SN +LG+HSHIGSQIFET GF A+E + F +V+E V+N+GGGFGIR Sbjct: 193 ALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVVKVLNVGGGFGIR 252 Query: 121 YVEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEI 180 Y E DTPL + YV A+T AV+ FT + LP+IWVEPGRSIVGDAGTTLYTVG+ K+I Sbjct: 253 YTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDI 312 Query: 181 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVE 240 PG+RKYV+VDGGMTDN RPALY ++YEA+LANR + NEETVSIAGKCCESGDMLIWD+ Sbjct: 313 PGIRKYVSVDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKCCESGDMLIWDIT 372 Query: 241 LPKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIAND 298 LPKV S DLLA++CTGAY YSMA+NYNRIRRPAVVFV+ G S +VV RE++++II ND Sbjct: 373 LPKVASADLLAISCTGAYGYSMANNYNRIRRPAVVFVKGGTSQIVVERETYENIIGND 430 >ref|NP_977863.1| diaminopimelate decarboxylase [Bacillus cereus ATCC 10987] gb|AAS40471.1| diaminopimelate decarboxylase [Bacillus cereus ATCC 10987] Length = 438 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/298 (62%), Positives = 226/298 (75%), Gaps = 1/298 (0%) Query: 1 VELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXX 60 +EL +L +A++ VNIL+RVTPGVEAH H Y +TGQ DSKFGF + NG Sbjct: 134 LELEILHDLAVQHGKFVNILIRVTPGVEAHTHE-YITTGQDDSKFGFGVSNGQAMQAIEL 192 Query: 61 XXXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIR 120 +SN +LG+HSHIGSQIFET GF A+E + F +V+E V+N+GGGFGIR Sbjct: 193 ALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVVKVLNVGGGFGIR 252 Query: 121 YVEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEI 180 Y E DTPL + YV A+T AV+ FT + LP+IWVEPGRSIVGDAGTTLYTVG+ K+I Sbjct: 253 YTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDI 312 Query: 181 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVE 240 PG+RKYV+VDGGMTDN RPALY ++YEA+LANR + NEE VSIAGKCCESGDMLIWD+ Sbjct: 313 PGIRKYVSVDGGMTDNLRPALYNARYEAMLANRGNDENEEVVSIAGKCCESGDMLIWDIN 372 Query: 241 LPKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIAND 298 LPKV S DLLA++CTGAY YSMA+NYNRIRRPAVVF + G S +VV RE++++II ND Sbjct: 373 LPKVASADLLAISCTGAYGYSMANNYNRIRRPAVVFAKGGTSQIVVERETYENIIGND 430 >ref|NP_831199.1| Diaminopimelate decarboxylase [Bacillus cereus ATCC 14579] gb|AAP08400.1| Diaminopimelate decarboxylase [Bacillus cereus ATCC 14579] Length = 438 Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/297 (62%), Positives = 226/297 (76%), Gaps = 1/297 (0%) Query: 2 ELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXXX 61 EL +L +A++ VNIL+RVTPGVEAH H Y +TGQ DSKFGF + NG Sbjct: 135 ELEVLHDLAMQHGKFVNILIRVTPGVEAHTHE-YITTGQDDSKFGFGVSNGQAMQAIGLA 193 Query: 62 XXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIRY 121 +SN +LG+HSHIGSQIFET GF A+E + F +V+E+ V+N+GGGFGIRY Sbjct: 194 LQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLRQFLEEVREQTNYVVKVLNVGGGFGIRY 253 Query: 122 VEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEIP 181 E DTPL + YV A+T AV+ FT LP+IW+EPGRSIVGDAGTT+YTVG+ K+IP Sbjct: 254 TESDTPLTLETYVRAVTSAVREQFTVCEYPLPEIWIEPGRSIVGDAGTTIYTVGSVKDIP 313 Query: 182 GVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVEL 241 G+RKYV+VDGGMTDN RPALY ++YEA+LANRA + NEE VSIAGKCCESGDMLIWD+ L Sbjct: 314 GIRKYVSVDGGMTDNLRPALYNARYEAMLANRANDENEELVSIAGKCCESGDMLIWDIHL 373 Query: 242 PKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIAND 298 PKV + DLLAV+CTGAY YSMA+NYNRIRRPAVVF + G S +VV RE++++II ND Sbjct: 374 PKVAASDLLAVSCTGAYGYSMANNYNRIRRPAVVFAKGGTSQVVVERETYENIIGND 430 >ref|NP_390219.1| diaminopimelate decarboxylase [Bacillus subtilis] pir||JU0471 diaminopimelate decarboxylase (EC 4.1.1.20) lysA - Bacillus subtilis gb|AAA67473.1| diaminopimelate decarboxylase emb|CAB14270.1| diaminopimelate decarboxylase [Bacillus subtilis subsp. subtilis str. 168] Length = 439 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/298 (58%), Positives = 223/298 (74%), Gaps = 1/298 (0%) Query: 2 ELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXXX 61 E+ +L+ + ++++LLR+TPGVEAH H Y +TGQ DSKFGFD+ NG Sbjct: 135 EIALLEDLCKETGHSIDVLLRITPGVEAHTHD-YITTGQEDSKFGFDLHNGQTERAIEQV 193 Query: 62 XXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIRY 121 ++QLLGVH HIGSQIF+T GF LA E+I + ++ V+NLGGGFGIRY Sbjct: 194 LQSEHIQLLGVHCHIGSQIFDTAGFVLAAEKIFKKLDEWRDSYSFVSKVLNLGGGFGIRY 253 Query: 122 VEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEIP 181 E D PL +EYV I AVK + + +P+IW+EPGRS+VGDAGTTLYTVG+ KE+P Sbjct: 254 TEDDEPLHATEYVEKIIEAVKENASRYGFDIPEIWIEPGRSLVGDAGTTLYTVGSQKEVP 313 Query: 182 GVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVEL 241 GVR+YVAVDGGM DN RPALY++KYEA ANR E +++TVSIAGKCCESGDMLIWD++L Sbjct: 314 GVRQYVAVDGGMNDNIRPALYQAKYEAAAANRIGEAHDKTVSIAGKCCESGDMLIWDIDL 373 Query: 242 PKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIANDI 299 P+V+ GDLLAV CTGAY YSMA+NYNRI RPAVVFV+NG++ LVV+RE+++DI+ D+ Sbjct: 374 PEVKEGDLLAVFCTGAYGYSMANNYNRIPRPAVVFVENGEAHLVVKRETYEDIVKLDL 431 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 447,080,364 Number of extensions: 18468676 Number of successful extensions: 39991 Number of sequences better than 1.0e-05: 747 Number of HSP's gapped: 38492 Number of HSP's successfully gapped: 747 Length of query: 311 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 186 Effective length of database: 417,850,203 Effective search space: 77720137758 Effective search space used: 77720137758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)