BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0006.p (1180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242880.1| BH2014~unknown [Bacillus halodurans] >gi|253810... 560 e-158 ref|NP_241227.1| BH0361~unknown [Bacillus halodurans] >gi|253810... 498 e-139 ref|NP_981779.1| LPXTG-motif cell wall anchor domain protein [Ba... 475 e-132 ref|NP_266307.1| hypothetical protein L148778 [Lactococcus lacti... 361 6e-98 ref|NP_813892.1| conserved domain protein [Enterococcus faecalis... 329 2e-88 >ref|NP_242880.1| BH2014~unknown [Bacillus halodurans] pir||F83901 hypothetical protein BH2014 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05733.1| BH2014~unknown [Bacillus halodurans] Length = 1816 Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust. Identities = 357/967 (36%), Positives = 527/967 (54%), Gaps = 40/967 (4%) Query: 38 RDIITSVSMAVYGPDG---QTVTGSVYDVGSSVKLDYTWALPNGHGYVDGDTFAFQLPAQ 94 +IIT V V DG Q + + D+G + + Y W+LPNGHGY G TF FQLP Sbjct: 233 ENIITGVE--VRDEDGNILQADSTNHLDLGDPIGITYHWSLPNGHGYTAGSTFTFQLPDV 290 Query: 95 FELFNDI-NGSLVSDDGEVGSFTVSQSTHQVLMTFNNYIETHDNVQGTLSINTQFDKKVI 153 F L+NDI N LV + EVG+FT++Q V MTFN IE N+ G L + T+ K+ + Sbjct: 291 FHLYNDIENEPLVFNGTEVGTFTITQD-GTVTMTFNEMIEQLFNINGMLQVWTEI-KEDL 348 Query: 154 SGSTVQEIVFPV-NGGTQTIVVNFKPSVGSTIEKKG-VSGGFNADHIDWTVDVNKKLERV 211 G ++IVF V + + V F+ S I+K+G V G+NA I WTVD NK++ + Sbjct: 349 QGDVRRDIVFEVKDEELLRLPVQFRVPSASMIDKQGIVDRGYNATEITWTVDFNKQMREI 408 Query: 212 AGAVVTDPIPEGLALDSTVTLAVYALGVQLDGTVTVGALLDSSKYTAEVTDGT-LKVHFT 270 AV+ DPI G AL + ++ VY L VQL+G+V G L+D S Y+ DG +++F Sbjct: 409 DNAVLRDPIQLGQALQAG-SIEVYELNVQLNGSVVQGDLVDPSNYSIGQIDGDDFQINFG 467 Query: 271 DPAITGAYRIAYTTAVVSDTRSSFTNTASFAGDGREPVSSSATVTIERGGSLNKLATNYE 330 D I AYR+ + T + +S+ N A+ GD +P+ ++A+V +RG + K +T Y Sbjct: 468 D--IDSAYRVVFKTDITDGDATSYQNVATLDGDNIDPMPANASVGTQRGVPIAKTSTGYN 525 Query: 331 WGKQVISWAIEYNYNNKAIPQGSGVLTDLFNNSQELVPGSVKVYPVTLNSSGTAVKGTAL 390 Q ISW I YNYN K + + +LTD F NSQEL+PGS +V +T++ +G A + + Sbjct: 526 SATQTISWEIRYNYNEKTVAEADAILTDWFTNSQELIPGSFRVIRMTIDENGNATEDEEV 585 Query: 391 SENVDYTVTEATGQGKKGFKLEFLHDISSAFRIEYKTKSADRVLTDTTISNTV-SDSTYS 449 S ++T+TE + + GF+L+F DI++A++I Y+T S++RVL + TI NTV + + Sbjct: 586 S---NFTLTETSNASQNGFELQFNEDINNAYKIVYQTTSSERVLGNQTIQNTVETGEGRT 642 Query: 450 VEASQLIRSAIIYKNLSGVDYKNHTTDWKITLNGDGYPMNNVVVTDTFPQGGQKFIPESV 509 A++ I + +K +Y+ T W ITLN D Y M NV +TD F GG I + Sbjct: 643 AGANRSIGQVVFHKRHGTPNYQEKTIPWTITLNDDSYEMTNVTITDVFNNGGLTLIDGTF 702 Query: 510 VVRNASGTVLGASAYTLEYNSPVKPNAGFKVKFTSPVSGTHTIAYRTEFSNDWLYGNTDN 569 +R+ S T++ YT + GF ++FT+P++ H I Y T F + + N Sbjct: 703 TIRSGSTTLVQGVDYTFALDGA----DGFTIEFTNPITTPHVIEYVTAFDYEARQDKSRN 758 Query: 570 FVNN-ARIDWV-GGDGKAQWTEAKGLFIPRAEVKNNGFKAGAYNARYKLFAWTLGINYNS 627 ++N A ++WV G+ ++ +A +F P + +NNGFK G+YNA K W +G+NYN Sbjct: 759 VLDNVATLEWVPEGETDSRSMQATAVFAPDSNTRNNGFKNGSYNAVTKEITWNIGVNYNL 818 Query: 628 KVIADPVITDILTSGQIMADGSLRVFNMNIDANGEPSRGSEIPKNAYTYTV-----GTGN 682 + + D V+ D + GQ + S+ VF M + ++ Y + G GN Sbjct: 819 QELHDAVVEDFIQEGQHLVADSIEVFEMGLTGGANGVNQGDLLTEGVDYDLVMVQDGDGN 878 Query: 683 E-LKVTFKDAISSPYYVVFNTTMQGQLIGPKVDNTAKLLDGTRKVSKDLFASVNIPYGGE 741 +V F+D I SPY++ F T++ +LI N A +L + L A+V++ +GGE Sbjct: 879 PGFRVEFRDTIDSPYWISFKTSLDERLIKQTYQNEA-ILSSSNTDDFRLDAAVSVQHGGE 937 Query: 742 YVYKNGVQNGDKLDWTIAINRSQSTIKNAVLTDIPSRNQILLPDSFHLYPAYAETNGELI 801 YV K+GVQ+G +DW I IN +QST+ NA + D+PS NQILL DSF L+ TNG + Sbjct: 938 YVNKSGVQDGRVIDWRININYTQSTVTNAKIVDVPSPNQILLEDSFQLFSTNVATNGTIT 997 Query: 802 KGGPELVRDSDYTLRVITDEGGKQSFVLSFLHDISYAHILEYKSLIVANTGEKLVNTVNL 861 KG P L R DY L + TDE G ++F LSF + I A+ILEYKS I A E + N V+ Sbjct: 998 KGAP-LERGVDYILEIFTDEDGNETFELSFPNVIDRAYILEYKSFIYAQNNEFVSNQVSF 1056 Query: 862 TGTNVERVTQETT---REIXXXXXXXXXXXXXXXXXLAVQKLDAADSQLLLAGATFELYR 918 G + T E+T I + V K+DA + LAGATF LY Sbjct: 1057 EGDEI--TTNESTNSSESIQVRLSGGSGTGSGERGSIEVTKVDATSGE-TLAGATFVLYD 1113 Query: 919 LNGSERVLINTRTTDAAGSAVFNNIWLGSYVLIETAAPAGYALDTREYPVTIGSSATINL 978 G +++ T T G A F N+ Y+L ET+AP GY + + ++ L Sbjct: 1114 STG--EIVLRTVVTGEDGIATFANLMYDDYILRETSAPEGYLVGINDSEHITLNTELHEL 1171 Query: 979 TVLNTKL 985 TV N K+ Sbjct: 1172 TVENAKI 1178 >ref|NP_241227.1| BH0361~unknown [Bacillus halodurans] pir||A83695 hypothetical protein BH0361 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04080.1| BH0361~unknown [Bacillus halodurans] Length = 1661 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 343/959 (35%), Positives = 495/959 (51%), Gaps = 56/959 (5%) Query: 31 AAGIENDRDIITSVSM---------AVYGPDGQTVTGSVYDVGSSVKLDYTWALPNGHGY 81 A+G E +I+TSV + A PD + +GS+V++ Y W L N HGY Sbjct: 216 ASGSEITENILTSVQLKDEEGNLIHANENPDLRPA------LGSAVEVIYNWKLRNNHGY 269 Query: 82 VDGDTFAFQLPAQFELFNDI-NGSLV--SDDGEVGSFTVSQSTHQVLMTFNNYIETHDNV 138 G TF FQLP F +N+I N LV + VGSF V+ + V MTFN IE N+ Sbjct: 270 TAGSTFTFQLPDAFRFYNNIENEPLVFTQANTTVGSFNVT-TDGTVTMTFNESIEQLSNI 328 Query: 139 QGTLSINTQFDKKVISGSTVQEIVFPVNGGT-QTIVVNFKPSVGSTIEKKGV-SGGFNAD 196 +G L + T+F ++ + G +Q I F +I V F+ + G +I+K+GV FNA Sbjct: 329 RGNLHLWTEF-REDLQGDRLQVIHFEAKDEVIASIPVEFENATGHSIDKRGVVDQTFNAT 387 Query: 197 HIDWTVDVNKKLERVAGAVVTDPIPEGLALDSTVTLAVYALGVQLDGTVTVGALLDSSKY 256 I WTVD NK+L+ + A++ DPI G AL + ++ VY L VQLDG+V GA +D S Y Sbjct: 388 EIKWTVDFNKQLQPIEQAILKDPIQTGQALRAG-SIKVYELNVQLDGSVVQGAEVDPSSY 446 Query: 257 TAEVTDGT-LKVHFTDPAITGAYRIAYTTAVVSDTRSSFTNTASFAGDGREPVSSSATVT 315 T E DG ++ F +I AYR+ + T + + + + N A+ G+ + +S+ A V Sbjct: 447 TIEQVDGNDFQIVF--GSIDSAYRVEFITDITNRNATYYMNRATLTGENIDDLSADAGVW 504 Query: 316 IERGGSLNKLATNYEWGKQVISWAIEYNYNNKAIPQGSGVLTDLFNNSQELVPGSVKVYP 375 RG L+K +T Y+ Q I+W I+YNY+ K I Q VLTDLF NS L+ S+KVY Sbjct: 505 THRGTPLSKASTGYDPATQTITWEIKYNYDGKLIRQADAVLTDLFTNSHILLDDSMKVYR 564 Query: 376 VTLNSSGTAVKGTALSENVDYTVTEATGQGKKGFKLEFLHDISSAFRIEYKTKSADRVLT 435 VT+N G V +S +Y+V + + GF L+F D+ +++I Y+T +A+R Sbjct: 565 VTINEHGNEVSTEEVS---NYSVNGTSDEDHNGFVLQFTEDVQDSYKIIYQTTAAERGFE 621 Query: 436 DTTISNTVSDSTYSVEASQLIRSAIIYKNLSGVDYKNHTTDWKITLNGDGYPMNNVVVTD 495 D TI NTV+ + + S+ + K +DY T W+ N + + NV+++D Sbjct: 622 DATIENTVTTGDHEAKTSRTVHQQTFNKWRGQIDYAKKTVAWEYFFNEERQELTNVIISD 681 Query: 496 TFPQGGQKFIPESVVVRNASGTVLGASAYTLEYNSP---VKPNAGFKVKFTSPVSGTHTI 552 F GG I +S + + T TLE + V GF ++F +P++ H + Sbjct: 682 VFANGGLTLIEDSFTITSFPST---DEEVTLENGNDYRVVTNETGFTIEFMAPITEPHHV 738 Query: 553 AYRTEFSNDWLYGNTDNFVNN-ARIDWVGGDGKAQWTEAKGLFIPRAEVKNNGFKAGAYN 611 Y T F D F+ N A + W G E K F P +NNGFK G YN Sbjct: 739 RYETTFDFDARDDKNKAFLENGATLQWQTSSGNTMKKEGKSEFHPDTFTRNNGFKNGLYN 798 Query: 612 ARYKLFAWTLGINYNSKVIADPVITDILTSGQIMADGSLRVFNMNIDA--NGEPSRGSEI 669 A K W +G+NYN + ++ D + GQ + S+ V+ M + +G S+GS++ Sbjct: 799 ATSKEITWNIGVNYNLHTLEHAIVEDFVREGQRLLMDSIEVYEMGLLGWWDG-VSQGSKL 857 Query: 670 PKNAYTYTV-----GTGNE-LKVTFKDAISSPYYVVFNTTMQGQLIGPKVDNTAKLL-DG 722 + Y + G G+ +V F + I S Y++ F T+++ LI N A L D Sbjct: 858 EEGT-DYVIEAVEDGEGHPGFQVRFLNTIDSAYWITFKTSLEDTLIKSNYPNRATLKSDN 916 Query: 723 TRKVSKDLFASVNIPYGGEYVYKNGVQNGDKLDWTIAINRSQSTIKNAVLTDIPSRNQIL 782 + D ASV++ +GGE+V K+G QNG +DW++ IN SQS+I NA + D PS NQIL Sbjct: 917 AEDFNVD--ASVSVRHGGEFVTKSGAQNGRLIDWSLNINFSQSSISNAKIVDEPSVNQIL 974 Query: 783 LPDSFHLYPAYAETNGELIKGGPELVRDSDYTLRVITDEGGKQSFVLSFLHDISYAHILE 842 L D+F LY + NG + K G EL RD DYTL + TD G Q F L F DI +ILE Sbjct: 975 LEDTFRLYATNVQPNGTMTK-GDELERDKDYTLDIRTDGEGNQHFELQFTEDIDTGYILE 1033 Query: 843 YKSLIVANTGEKLVNTVNLTGTNV--ERVTQETTREIXXXXXXXXXXXXXXXXXLAVQKL 900 Y+S I A G+ + N V L G + E VT E++ + L V K+ Sbjct: 1034 YQSFINARNGDVVTNNVKLEGDQLTTEEVT-ESSGAVSVRLSGGAGTGSGETGSLEVTKV 1092 Query: 901 DAADSQLLLAGATFELYRLNGSERVLINTRTTDAAGSAVFNNIWLGSYVLIETAAPAGY 959 D AD+ +L GATF LY G I T T G A F N+ G Y+L E +AP GY Sbjct: 1093 D-ADTGEVLQGATFTLYDSEG--EFAIRTLETGEDGKATFVNLLYGDYLLKEDSAPEGY 1148 >ref|NP_981779.1| LPXTG-motif cell wall anchor domain protein [Bacillus cereus ATCC 10987] gb|AAS44387.1| LPXTG-motif cell wall anchor domain protein [Bacillus cereus ATCC 10987] Length = 3242 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 325/945 (34%), Positives = 483/945 (51%), Gaps = 43/945 (4%) Query: 65 SSVKLDYTWALPNGHGYVDGDTFAFQLPAQFELFNDINGSLVSDDGE-VGSFTVSQSTHQ 123 S K+D+TW + D F FQLP F + N I L+ G +GSF V+ + Sbjct: 337 SITKIDFTWEVLESLNVKKDDYFIFQLPEYFIVHNTITEDLIDGQGNTIGSFVVTPD-GK 395 Query: 124 VLMTFNNYIETHDNVQGTLSINTQFDKKVISGSTVQEIVFPVNGGTQTIVVNFKPSVGST 183 V MTFN Y+E + N+ G L+I T+F++ I+G+T ++I FP+ + ++FKP V + Sbjct: 396 VTMTFNEYVENYPNIAGHLNIRTEFNEVKITGTTEKQIPFPIKEKDVIVELDFKPKVKKS 455 Query: 184 IEKKGVSGG-FNADHIDWTVDVNKKLERVAGAVVTDPIPEGLALDSTVTLAVYALGVQLD 242 I+KKGV N + I+W V++NK +++ AV D IP G +L+ ++ VY L V ++ Sbjct: 456 IDKKGVPDRPINTNQINWKVEMNKTKDKLTNAVFQDDIPNGASLNED-SIKVYYLEVDIN 514 Query: 243 GTVTVGALLDSSKYTAEVTDGTLKVHFTDPAITGAYRIAYTTAVVSDTRSSFTNTASFAG 302 G T GA + +Y + L + F AY I Y T + ++ +SF N A + Sbjct: 515 GKTTRGAEVPKEEYEFTSSSNKLNIAFK-KETNKAYEIEYATKITDESVTSFKNNAKVSS 573 Query: 303 DGREPVSSSATVTIERGGSLNKLATNYEWGKQVISWAIEYNYNNKAIPQGSGVLTDLFNN 362 ++ VS++ATVT+ RG L K + Y Q I W I +N + + I + +L D+ + Sbjct: 574 KNQKDVSANATVTVSRGTHLAK-NSRYNPKTQTIEWTITFNGDQRDIKKADALLKDVLDK 632 Query: 363 SQELVPGSVKVYPVTLNSSGTAVKGTALSENVDYTVTEATGQGKKGFKLEFLHDISSAFR 422 S ++ S+ V + + +G V G + ++TV E +GF L+F DI+SA+ Sbjct: 633 SHKVDKNSIVVKNASYDDAGKLVTGDNAT---NFTVKET----DEGFDLQFNEDINSAYV 685 Query: 423 IEYKTKSADRVLTDTTISNT-VSDSTYSVEASQLIRSAIIY----KNLSGVDYKNHTTDW 477 I Y +K+ + V+ D I N ++D +S ++ I KN + DY TT W Sbjct: 686 ITYTSKATNDVIKDGEIENKIIADGKWSQTNKVTLKQQNIIKKHNKNANDTDYNAKTTKW 745 Query: 478 KITLNGDGYPMNNVVVTDTFPQGGQKFIPESVVVRNASGTVLGASAYTLEYNSPVKPNAG 537 I +N + Y +N+ V+ DTF GG +S + + S T+ YTL+ + G Sbjct: 746 TIIVNDNNYVLNDAVIKDTFDYGGLTLQKDSFKITDGSRTLDPKFDYTLDVT-----DTG 800 Query: 538 FKVKFT----SPVSGTHTIAYRTEFSNDWLYGNTDN--FVNNARIDWVGGDGKAQWTEAK 591 F+VK T S + T TI Y T+F+ + L +N F N A + W+ + K + + Sbjct: 801 FEVKLTGDYKSNMDKTLTITYTTDFNYENLSKEKNNKSFKNTANLSWIDINDKKNNSSSD 860 Query: 592 GLFIPRAEVKNNGFKAGAYNARYKLFAWTLGINYNSKVIADPVITDILTSGQIMADGSLR 651 F P K NGFK G+YNA+ K W +G NYN++ I DP I D+L Q + S+ Sbjct: 861 DTFDPDYYTKGNGFKYGSYNAQTKEIKWDIGFNYNNRPIKDPSIVDVLRDNQKLIPESIE 920 Query: 652 VFNMNIDANGEPSR-GSEIPKNAYTY---TVGTGNELKVTFKDAISSPYYVVFNTTMQGQ 707 V +M + G +P N YT T N L V FK+ I+S YY+ F T++ G+ Sbjct: 921 VRHMKLTGGAHGFEVGDPVPPNEYTIENPTKDNNNTLTVHFKNEINSAYYISFKTSLAGE 980 Query: 708 LIGPKVDNTAKLLDGTRKVSKDLFASVNIPYGGEYVYKNGVQNGDKLDWTIAINRSQSTI 767 I + DN A L DG++ V+ + + I GG V K QN +DW+++IN SQSTI Sbjct: 981 QINKRYDNYADLKDGSKTVTT-IHGAFEITNGGSGVTKTAKQNDKYIDWSVSINASQSTI 1039 Query: 768 KNAVLTDIPSRNQILLPDSFHLYPAYAETNGELIKG-GPELVRDSDYTLRVITD-EGGKQ 825 +NAV+TD P+ NQIL SFHLYP +G L K EL +DY L+VITD + GKQ Sbjct: 1040 ENAVVTDEPTDNQILDEKSFHLYPTTVAVDGTLTKDTANELKEGTDYKLKVITDNDTGKQ 1099 Query: 826 SFVLSFLHDISYAHILEYKSLIVANTGEKLVNTVNLTGTNVERVTQETTR--EIXXXXXX 883 F + FLH I A+ILEY+SLI A+ EK+ N +TG + E + E+ Sbjct: 1100 QFKVEFLHTIDRAYILEYRSLINADHNEKVSNKATITGHRLTLTKVEDVKFVEVKVSSGS 1159 Query: 884 XXXXXXXXXXXLAVQKLDAADSQLLLAGATFELYRLNGSERVLINTRTTDAAGSAVFNNI 943 L + K+D D + LAGA F LY G+ I TT G A FNN+ Sbjct: 1160 GGGSANKGRGSLQIIKVDDKDQTVRLAGAEFTLYDQTGT--TAIRPITTGDDGVAKFNNL 1217 Query: 944 WLGSYVLIETAAPAGYAL--DTRE-YPVTIGSSATINLTVLNTKL 985 Y++ ET AP GY + + RE V +GS T N K Sbjct: 1218 RRDKYLIKETKAPTGYVISKELREGILVELGSEEITKYTFTNKKF 1262 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 2 VKKRISVALVVLMLVVQYAYSIGFSMKATAAGIENDRDIITSVSMAVYGPDGQTVTGSVY 61 +KK ++ L+V +L Q A +KA + D + + D ++ Sbjct: 1 MKKLFNICLIVFVLFSQLASFPYNQVKAETLTGNSLFDTVEMKDATNHIIDEALNPKNLI 60 Query: 62 DVGSSVKLDYTWALPNGHGYVDGDTFAFQLPAQFELFNDINGSLVSDDGEVGSFTVSQST 121 VGS++ L+Y W++ + D+ Q+P ++ +D G+L+++ +G + V + Sbjct: 61 QVGSTIHLEYAWSIKDQQT----DSAVLQIPNALKVKSDQQGNLMAEQQIIGQYFVKAND 116 Query: 122 HQVLMTFNNYIETHDNVQGTLSINTQFDKKVISGSTVQEIVFPVNGGTQTIVV 174 +++ + FN+ ++ G +SI+T F+ + SG+ ++ FP+ ++I V Sbjct: 117 NKMKLVFNDQVKDSKGANGKISIDTVFNPDLKSGAKSVQLSFPLGATAKSISV 169 >ref|NP_266307.1| hypothetical protein L148778 [Lactococcus lactis subsp. lactis] pir||G86643 hypothetical protein ybeF [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK04249.1| HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis] Length = 1983 Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 279/939 (29%), Positives = 465/939 (49%), Gaps = 71/939 (7%) Query: 63 VGSSVKLDYTWALPNG-HGYVDGDTFAFQLPAQFELFNDINGSLVSDDGEVGSFTVSQST 121 + + V++DYTW++P GD F F+LP + S G+ G++T++ + Sbjct: 237 IDAEVQIDYTWSIPEDILPLKSGDYFDFKLPDGVTI-----EQATSSLGDYGTYTIN-AD 290 Query: 122 HQVLMTFNNYIETHDNVQGTLSINTQFDKKVISGSTVQEIVFPVNGGTQTIVVNFKPSVG 181 V FN +ET+ +++GT + FDK ++ G V + P ++ +P+ Sbjct: 291 GTVRFVFNEKVETYHDIKGTFHYDAHFDKTIVPGEVV--VDTPTEENFPPSEIHVRPTYD 348 Query: 182 STIEKKGVSGGF----NADHIDWTVDVNKKLERVAGAVVTDPIPEGLALDSTVTLAVYAL 237 I+K SG F N + W +++N+ L + A +TDP+PEG +S + +Y Sbjct: 349 QAIDK---SGHFDKTPNPSEVIWEININRPLNTMENATLTDPMPEGTTYES---VEIYPE 402 Query: 238 GVQLDGTV----TVGALLDSSKYTAEVTDGTLKVHFTDPAIT--GAYRIAYTTAV----- 286 V +G + L+ + YT D K+ F T A+ + YTT + Sbjct: 403 TVGKNGEIISIDKEHPLVKGTDYTV---DSNGKITFIGKYATTDQAFNVVYTTTIDESSF 459 Query: 287 -VSDTRSSFTNTASFAGDGREPVSSSATVTIERGGSLNKLATNYEWGKQVISWAIEYNYN 345 + SF NTA+ DG+ + SA+VT + G + K Q+ +W IEYNYN Sbjct: 460 PEKEGAVSFKNTATL-NDGKTDTNESASVTAQYKGPIKKNGPFTTGNDQIYNWNIEYNYN 518 Query: 346 NKAIPQGSGVLTDLFNNSQELVPGSVKVYPVTLNSSGTAVKGTALSENVDYTVTEATGQG 405 K GS + D +++ ELV GSVK+Y +T +S+G +KG L E DY + + Sbjct: 519 EKNHKAGS-FIEDTMSDAIELVNGSVKLYKITFDSNGKEIKGAQLKEGEDYKLVQDPDNP 577 Query: 406 KKGFKLEFLHDISSAFRIEYKTKSADRVLTDTTISNTVS-DSTYSVEASQLIRSAIIYKN 464 +K FK+EF+ DI A ++EY+TK D V + TI N+V+ D+ + E+ I KN Sbjct: 578 QK-FKIEFITDIDYAVKVEYQTKVKDIVDGNVTIDNSVTTDTGDNSESGGNATQQGIVKN 636 Query: 465 LSG-VDYKNHTTDWKITLNGDGYPMNNVVVTDTFPQGGQKFIPES--VVVRNASGTVLGA 521 + G +DY+N WKI +N GY M N + D +G F+ + ++ + A VL Sbjct: 637 IDGDIDYENREIPWKIDINSPGYWMENWSLEDKMSEG-LTFLENTFQIIDKTAGNKVLSP 695 Query: 522 SAYTLEYNSPVKPNAGFKVKFTSPV-SGT---HTIAYRTEFSNDWLYGNTDN-----FVN 572 + YTL +K AGF V F SP+ GT + I Y+T+F + + + FVN Sbjct: 696 TEYTL-----IKTTAGFSVSFNSPLKEGTDHKYQIKYKTKFDTSVIDNGSGHEGDIKFVN 750 Query: 573 NARIDWVGGDGKAQWTEAKGLFIPRAEVKNNGFKAGAYNARYKLFAWTLGINYNSKVIAD 632 +A + W +G F P + NG K+G+YNA K WT+ N+N + +++ Sbjct: 751 DASMTWKDKNGGDHTNNDHKEFKPIPPFQYNGQKSGSYNATSKKITWTIAANFNQQELSN 810 Query: 633 PVITDILTSGQIMADGSLRVFNMNIDANGEPSRGSEIPKNAYTYTVGTGNELKVTFKDAI 692 ITD ++ Q GS +V+ I+ NG + G+E+ + V + +KV D Sbjct: 811 ASITDPISDDQNYVSGSAKVYEATINKNGTYTLGAEVTSDMGIKIVESKGSVKVELPDGS 870 Query: 693 SSPYYVVFNTTMQGQLIGPK-VDNTAKLLDGTRKVSKDLFASVNIPYGGEYVYKNGVQ-- 749 + Y ++F T+++G LI K N A + + +S DL ASV + GE+V K+G Q Sbjct: 871 TKAYVLIFETSLEGNLINQKEYKNKATFTN--KDISHDLSASVTPAHQGEFVTKDGSQSS 928 Query: 750 -NGDKLDWTIAINRSQSTIKNAVLTDIPSRNQILLPDSFHLYPAYAETNGELIKGGPELV 808 + + ++W + +N SQST+KN +TD PS NQ ++ +Y + +G + + ++ Sbjct: 929 TDSNYVNWKLTVNASQSTLKNVEVTDNPSSNQYIVAKDILIYGTSIDASGNITENKNIIL 988 Query: 809 RD-SDYTLRVITDEG-GKQSFVLSFLHDISYAHILEYKSLIVANTGEKLV-NTVNLTGTN 865 DY++ + TD G Q+ + FL +I+ A+++EY++LI ++ +V N ++TG N Sbjct: 989 EQGKDYSVDIQTDNSTGAQTVKIKFLSEINTAYVVEYRALITSDKANDVVTNQAHITGDN 1048 Query: 866 VERVTQETTREIXXXXXXXXXXXXXXXXXLAVQKLDAADSQLLLAGATFELYRL--NGSE 923 + + Q+ +++ L +K+ ++ LAGA +L+ + +G + Sbjct: 1049 EKIIEQDVEKDVPVTNHNGSANGSKGSVTL--EKVGPGKAK--LAGAHLQLWSIGTDGKK 1104 Query: 924 RVLINTRTTDAAGSAVFNNIWLGSYVLIETAAPAGYALD 962 LI TD G N+ + Y+LIET AP GY LD Sbjct: 1105 DKLIREGDTDKNGDLKLGNLRVTDYLLIETKAPTGYTLD 1143 >ref|NP_813892.1| conserved domain protein [Enterococcus faecalis V583] gb|AAO79964.1| conserved domain protein [Enterococcus faecalis V583] Length = 1987 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 290/976 (29%), Positives = 441/976 (45%), Gaps = 90/976 (9%) Query: 40 IITSVSMAVY-GPDGQTVTGSVYDVGSSVKLDYTWALPNG--HGYVDGDTFAFQLPAQFE 96 II + +Y PDG T Y ++ ++ W++P GD F FQLP + Sbjct: 175 IIDNFEDPIYLNPDGTPATPP-YKEDVTIHWNFNWSIPEDVREQMKAGDYFEFQLPGNLK 233 Query: 97 LFNDINGSLVSDDGEV-GSFTVSQSTHQVLMTFNNYIETHDNVQGTLSINTQFDKKVISG 155 +G LV +G V G++T+S+ V TFN I + ++ G S++T + G Sbjct: 234 PNKPGSGDLVDAEGNVYGTYTISED-GTVRFTFNERITSESDIHGDFSLDTHLNDSDGRG 292 Query: 156 STVQEIVFPVNGGTQTIVVNFKPSVGSTIEKKG-VSGGFNADHIDWTVDVNKKLERVAGA 214 I P +V+ P I+K+G N I WTVD+N+ ++ Sbjct: 293 PGDWVIDIPTQEDLPPVVIPIVPDTEQQIDKQGHFDRTPNPSAITWTVDINQAMKDQTNP 352 Query: 215 VVTDPIPEGLALDSTVTLAVYALGVQLDGTVT-VGALLDSSKYTAEVTDGTLKVHFTDPA 273 VT+ P G S + VY L + LDGT+ VG L +YT + +G + + Sbjct: 353 TVTETWPTGNTFKS---VKVYELVMNLDGTIKEVGRELSPDEYTVD-KNGNVTIKGD--- 405 Query: 274 ITGAYRIAYTT----AVVSDTRSS--FTNTASFAGDGR-EPVSSSATVTIERGGSLNKLA 326 AYR+ Y T AV+ D F N A+ D + + ATVT G L+K Sbjct: 406 TNKAYRLEYQTTIDEAVIPDGGGDVPFKNHATLTSDNNPNGLDAEATVTATYGKMLDKRN 465 Query: 327 TNYEWGKQVISWAIEYNYNNKAIPQGSGVLTDLFNNSQELVPGSVKVYPVTLNSSGTAVK 386 +Y+ Q +W I YNY + IP+ V+TD ++ P S+ +Y VT + G V Sbjct: 466 IDYDEANQEFTWEINYNYGEQTIPKDQAVITDTMGDNLTFEPDSLHLYSVTFDDKGNEVV 525 Query: 387 GTALSENVDYTVTEATGQGKKGFKLEFLHDISSAFRIEYKTKSADRVLTDTTISNTVSDS 446 G L E DY V G F ++FLHD++ A +I+YKTK V D ++N V Sbjct: 526 GAELVEGKDYKVVI---NGDGSFAIDFLHDVTGAVKIDYKTKVDGIVEGDVAVNNRVDVG 582 Query: 447 T--YSVEASQLIRSAIIYKNLSGVDYKNHTTDWKITLNGDGYPMNNVVVTDTF-PQGGQK 503 T +S + + II KN VDY+N T W + +N + Y M N V+TDT+ P G Sbjct: 583 TGQHSEDDGTASQQNII-KNTGAVDYQNSTIGWTLAVNQNNYLMENAVITDTYEPVPGLT 641 Query: 504 FIPESVVVRNASGTVLGASA-----YTLEYNSPVKPNAGFKVKFT---SPVSGTHTIAYR 555 +P S+VV++ T GA + +E GFKV F + S I Y Sbjct: 642 MVPNSLVVKD---TTTGAQLTLGKDFMVEITRNADGETGFKVSFIGAYAKTSDAFHITYT 698 Query: 556 TEFSNDWLYGNT---DNFVNNARIDWVGGDGKAQWTEAKGLFIPRAEVKNNGFKAGAYNA 612 T F L N D++ N A IDW G +E F P N K+G YNA Sbjct: 699 TFFDVTELDANNPALDHYRNTAAIDWTDEAGNNHHSEDSKPFKPLPAFDLNAQKSGVYNA 758 Query: 613 RYKLFAWTLGINYNSKVIADPVITDILTSGQIMADGSLRVFNMNIDANG----------- 661 K WT+ +N ++ + D +TD + + Q GSL+V+ N +G Sbjct: 759 VTKEITWTIAVNLSNNRLVDAFLTDPILTNQTYLAGSLKVYEGNTKPDGSVEKVKPTQPL 818 Query: 662 ------EPSRGSEIPKNAYTYTVGTGNELKVTFKDAISSPYYVVFNTTMQGQLI--GPKV 713 EPS KN T+ V N+ S Y + F T++ ++I Sbjct: 819 TDITMEEPSE-----KNQNTWRVDFPND---------SRTYVIEFKTSVDEKVIEGSASY 864 Query: 714 DNTAKLLDGTRKVSKDLFASVNIPYGGEYVYKNGVQNGDKLD---WTIAINRSQSTIKNA 770 DNTA + + S+D+ V+I +GGE V K G + D D W + IN +QS + + Sbjct: 865 DNTASYTN--QGSSRDVTGKVSIQHGGESVKKGGEYHKDDPDHVYWHVMINGAQSVLDDV 922 Query: 771 VLTDIPSRNQILLPDSFHLYPAYAETNGELIKGGPELVRD-SDYTLRVITD-EGGKQSFV 828 V+TD PS NQ+L P+S +Y +G + ++ + DYTL V TD E G+Q V Sbjct: 923 VITDTPSPNQVLDPESLVIYGTNVTEDGTITPDKSVILEEGKDYTLEVTTDNETGQQKIV 982 Query: 829 LSFLHDISYAHILEYKSLI---VANTGEKLVNTVNLTGTNVERVTQETTREIXXXXXXXX 885 + H I + +EY+SL+ A + + + N V++TG E V + ++ Sbjct: 983 VKMAH-IEAPYYMEYRSLVTSSAAGSTDTVSNQVSITGNGSEVVHGDDNGDVVVDIDHSG 1041 Query: 886 XXXXXXXXXLAVQKLDAADSQLLLAGATFELYRLNGSERVLINTRTTDAAGSAVFNNIWL 945 + ++K A D +LAGA F+++ + ++ ++ T DA G F + Sbjct: 1042 GHATGTKGKIQLKKT-AMDETTILAGAHFQIW--DQAKTQVLREGTVDATGVITFGGLPQ 1098 Query: 946 GSYVLIETAAPAGYAL 961 G Y+L+ET AP GY + Sbjct: 1099 GQYILVETKAPEGYTV 1114 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,616,669,251 Number of extensions: 70115403 Number of successful extensions: 127889 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 127664 Number of HSP's successfully gapped: 34 Length of query: 1180 Length of database: 757,237,578 Length adjustment: 137 Effective length of query: 1043 Effective length of database: 385,269,015 Effective search space: 401835582645 Effective search space used: 401835582645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)