BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0212.0004.p
         (315 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00060122.1| hypothetical protein [Clostridium thermocellu...    86   1e-15
ref|ZP_00060580.1| hypothetical protein [Clostridium thermocellu...    82   1e-14
ref|ZP_00060931.1| COG2340: Uncharacterized protein with SCP/PR1...    79   2e-13
ref|ZP_00060970.1| COG4880: Secreted protein containing C-termin...    74   4e-12
ref|ZP_00062184.1| hypothetical protein [Clostridium thermocellu...    74   4e-12

>ref|ZP_00060122.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
          Length = 265

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 67/118 (56%)

Query: 49  NGIYANMDVAPYITKGTTMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQKTA 108
           NG+    DVAPYI  G TMVP +   +  G  + WN  ++T+  T +   I +  G+  A
Sbjct: 51  NGVEIKFDVAPYIKNGRTMVPFRAIFEALGVDISWNGVNRTILATNDTTEIYIEIGKAFA 110

Query: 109 KVGNKEVKLEAASTLKQGRVMVPLRFIAESTGAYVLWNPKQRIVFVAKSSEEEELKEQ 166
            V   +V L+A + +  GR  VPLRF++E+ GA V W+  +R V+++  ++  +L E+
Sbjct: 111 YVNGYKVNLDAEAEIVGGRTFVPLRFVSENAGADVSWDGARRTVYISYVNQVRDLGEK 168


>ref|ZP_00060580.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
          Length = 591

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 56  DVAPYITKGT-TMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQKTAKVGNKE 114
           D  P+I   + TMVP++   +   + V W    + V + + G  I+LV G KTAKV  KE
Sbjct: 40  DQQPFIDSNSRTMVPIRFISEALDAKVDWIEKERMVVIKKQGTEISLVVGMKTAKVNGKE 99

Query: 115 VKLEAASTLKQGRVMVPLRFIAESTGAYVLWNPKQRIV 152
           +KL+ +S +  GR  VP+RFI+E+ GA V W+ K +IV
Sbjct: 100 IKLDTSSVIAGGRTFVPVRFISEAFGATVEWDGKNKIV 137


>ref|ZP_00060931.1| COG2340: Uncharacterized protein with SCP/PR1 domains [Clostridium
           thermocellum ATCC 27405]
          Length = 451

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%)

Query: 49  NGIYANMDVAPYITKGTTMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQKTA 108
           NG Y  +DV P I  G T+VP++   +   + V+W   SK V + +N   ITL      A
Sbjct: 39  NGQYLQLDVPPVIENGRTLVPVRGVFESINADVEWVPESKKVNVYKNDIVITLKINSNIA 98

Query: 109 KVGNKEVKLEAASTLKQGRVMVPLRFIAESTGAYVLWNPKQRIVFVAKSSEEEE 162
            + +  V+L+  + + +GR +VP+RFI+ES GA V W+   R V +    E  E
Sbjct: 99  YINDNAVRLDVPARIVEGRTLVPVRFISESIGASVGWDDATRTVIINTYDENVE 152


>ref|ZP_00060970.1| COG4880: Secreted protein containing C-terminal beta-propeller
           domain distantly related to WD-40 repeats [Clostridium
           thermocellum ATCC 27405]
          Length = 845

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%)

Query: 54  NMDVAPYITKGTTMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQKTAKVGNK 113
           N +V PYI  G T+VP++   +  G+ V W+  +  VT+  N + + LV G K  KVG+K
Sbjct: 81  NANVKPYIKDGRTLVPVRFVSESIGAQVDWDRKNSRVTVKLNNKVVELVIGNKIMKVGDK 140

Query: 114 EVKLEAASTLKQGRVMVPLRFIAESTGAYVLWN 146
           E  L+ A  + +GR  +PLR + E+ G  V ++
Sbjct: 141 EEVLDVAPEISEGRTYLPLRSLVEALGKKVFYD 173


>ref|ZP_00062184.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
          Length = 243

 Score = 73.9 bits (180), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 59/99 (59%)

Query: 56  DVAPYITKGTTMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQKTAKVGNKEV 115
           DV P    G  +VP++   +  G+ V +N+A+K V + ++   I L  G + A V  +++
Sbjct: 143 DVKPENVNGRVLVPIRTISEEMGAEVTYNDATKQVLIAKDDTEILLTIGSQEAYVNGEKI 202

Query: 116 KLEAASTLKQGRVMVPLRFIAESTGAYVLWNPKQRIVFV 154
            L+  + + +GR MVPLRFI+ES  A V W+ + +IV++
Sbjct: 203 MLDVPAMIIEGRTMVPLRFISESMNATVEWDGEAQIVYI 241


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 419,778,845
Number of extensions: 15357800
Number of successful extensions: 27588
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 27570
Number of HSP's successfully gapped: 26
Length of query: 315
Length of database: 757,237,578
Length adjustment: 125
Effective length of query: 190
Effective length of database: 417,850,203
Effective search space: 79391538570
Effective search space used: 79391538570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)