BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0004.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00117292.1| COG3507: Beta-xylosidase [Cytophaga hutchinso... 434 e-120 ref|NP_149277.1| Possible beta-xylosidase, family 43 of glycosyl... 317 3e-85 pir||T30909 endo-1,4-beta-xylanase (EC 3.2.1.8) - Caldocellum sa... 310 5e-83 gb|EAA61146.1| hypothetical protein AN7275.2 [Aspergillus nidula... 254 4e-66 gb|EAA49824.1| hypothetical protein MG09988.4 [Magnaporthe grise... 244 5e-63 >ref|ZP_00117292.1| COG3507: Beta-xylosidase [Cytophaga hutchinsonii] Length = 1266 Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/498 (45%), Positives = 300/498 (60%), Gaps = 21/498 (4%) Query: 7 TNPVIWADVPDVDVIRVGPVFYMVSTSMHSMPGCPIMKSVNLKDWEIVGYVYDTFEENEA 66 TNP+I ADVPD+ ++RVG +YM ST+MH PG PIMKS +L +W+IV Y Y T +++ Sbjct: 289 TNPIINADVPDIAIVRVGNNYYMSSTTMHMNPGVPIMKSTDLVNWDIVNYCYTTLSTSDS 348 Query: 67 HRLEDGEGIYGSGSWAASLRHKNGTFYVCFSSNDMDQFYIYQTRDIEHGPWERSVIPGLY 126 + L +G+ YG GSWA+S+R+ G +YV +N + YIY+T +IE GPW S + Y Sbjct: 349 YSLANGKNEYGHGSWASSIRYFKGMYYVTTFAN-TGRTYIYKTANIETGPWTVSTLNASY 407 Query: 127 HDPALLLDDDGRNYVIYGNGDIRVQELTADLTAVKPGGTDQLLLEGE---RKDIMLRIEG 183 HD L DDD R Y+IYG GDI++ ELTAD +A+K GGT++ L+ I L EG Sbjct: 408 HDCNLFFDDDDRVYLIYGQGDIKIIELTADASAIKSGGTNKTLITNAGAVAGPIGLNAEG 467 Query: 184 CHAHKRDGYYFLFFIEWPSAGNQRRRQLCYRSRELLGPYEHRVVLDDDLGYRNNGVAQGG 243 K +GYY++ I WPS G R Q+ +RS L G YE +V+L D GVAQG Sbjct: 468 SQVLKHNGYYYINNICWPSGG--MRTQIIHRSSTLTGTYESKVILKDQ------GVAQGS 519 Query: 244 IVDTPDGYWYAVLFQDHGAVGRIPCVFPLTWENNWPVIGDGGKAPLSFETKLPAGEPKPL 303 ++TP G WYA LF+D GA GR+P + P+TW N+WPV+ P + + G + Sbjct: 520 FIETPAGKWYAYLFKDGGARGRVPYLVPMTWTNDWPVL---SAVPATLDIPQGTGGMHNI 576 Query: 304 VISDEFEYTENRLALQWQWNHNPDNGLWSVTERPGYLRLRTGRIADDVLLARNTLTQRTE 363 V SDEF L L WQWNHNP N WS+T++ GYLRL R +VL+ NTLTQRT Sbjct: 577 VSSDEFSQAA-PLKLAWQWNHNPQNNYWSLTQKSGYLRLTNERTDPNVLMTTNTLTQRTF 635 Query: 364 GPASSAETMLHVSGLSAGDRAGMVALQNGYGTVEVAAGEQGQLDVNMCINGDKGTEV--- 420 GP S T++ VSG+ GD AG+VALQ YG V V G + +NG+ T Sbjct: 636 GPQCSGYTVIDVSGMKDGDYAGLVALQKQYGYVGVKM--TGTTKSIVMVNGNDVTGTPAQ 693 Query: 421 VESVPFTGERIGLRIDFNFEDGVDEARFFYSGDGEVWHPIGQTLHMKYTLDHFMGYXXXX 480 V SVP I LRID ++ + D+A F+YS +G W IG TL M YT+ F+GY Sbjct: 694 VASVPLNQNIIYLRIDMDYRNQTDKAYFYYSLNGTTWQSIGSTLQMSYTIPQFIGYRYGL 753 Query: 481 FNYATRQPGGYADFDYFR 498 F YA+ GGYADFD+FR Sbjct: 754 FTYASVSAGGYADFDFFR 771 >ref|NP_149277.1| Possible beta-xylosidase, family 43 of glycosyl hydrolases [Clostridium acetobutylicum] gb|AAK76859.1| Possible beta-xylosidase, family 43 of glycosyl hydrolases [Clostridium acetobutylicum] Length = 531 Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 194/522 (37%), Positives = 275/522 (52%), Gaps = 53/522 (10%) Query: 1 LNTAKITNPVIWADVPDVDVIRVGPVFYMVSTSMHSMPGCPIMKSVNLKDWEIVGYVYDT 60 L NPV++AD PD VI+VG +YM +S++ MPG PI+KS +L +WEI Y +D Sbjct: 37 LGNGTYQNPVMYADYPDNSVIKVGSTYYMACSSINYMPGLPILKSQDLVNWEICSYAFDR 96 Query: 61 FEEN---------EAHRLEDGEGIYGSGSWAASLRHKNGTFYVCFSSNDMDQ-FYIYQTR 110 + +A+ L GE +Y G WA SL++ NGTFY F+S D+ + F +T Sbjct: 97 IDTGMSGIDKTHADAYNLVGGENVYSKGCWAPSLKYHNGTFYATFASLDLGKTFVCTKTG 156 Query: 111 DIEHGPWERSVIPGL--YHDPALLLDDDGRNYVIYGNGDIRVQELTADLTAVKPGGTDQL 168 + G W + I G+ HD L D DGR Y+I NG V ELT D +VK GG +Q Sbjct: 157 PMGFGGWTFTAISGIGYAHDADLFFDTDGRVYLI--NGGCNVTELTPDCKSVKYGGINQK 214 Query: 169 LLEGERKDIMLRIEGCHAHKRDGYYFLFFIEWPSAGNQRRRQLCYRSRELLGPYEHRVVL 228 + +G +G K++GYY++ G +R + +RS+ L GPYE ++L Sbjct: 215 IFDGGPSH-----DGNRIFKKNGYYYILSTPIKGNGAYQRIEKAWRSKSLTGPYEQTIIL 269 Query: 229 DDDLGYRNNGVAQGGIVDTPDG-YWYAVLFQDHGAVGRIPCVFPLTWENNWPVIGDGGKA 287 DD + Q +VD DG Y +A+LF+D GAVGRIP + P+TW NNWP+IG G A Sbjct: 270 DDGANH------QVCVVD--DGSYNWAMLFEDKGAVGRIPKLAPVTWVNNWPMIGVNGSA 321 Query: 288 PL-SFETKLPAGEPKPLVISDEFEYTENRLALQWQWNHNPDNGLWSVTERPGYLRLRTGR 346 + + K AG +D+ ++ + QWQWNHNPDN W+ +ERPG++RL+T Sbjct: 322 TVPNIYNKPAAGNGIKSPGTDDDFTSQGYVLSQWQWNHNPDNSKWTTSERPGWMRLKT-S 380 Query: 347 IADDVLLARNTLTQRTEGPASSAETMLHVSGLSAGDRAGMVALQNGYGTVEVAAGEQGQL 406 + D L ARNTLTQR +GPASS L + + G +G+ A + YG + V Sbjct: 381 YSKDFLQARNTLTQRIQGPASSGWVKLDTTNIKPGQISGLSAFHSKYGYIGV-------- 432 Query: 407 DVNMCINGDKGTEVVESVPFTGERIGLRIDFNF-------EDGVDEARFFYSGDGEVWHP 459 D GT+ + TG + + N + A+F+YS +G W Sbjct: 433 ------RNDNGTKKLVQYNVTGSETAINLTNNIVYLKVSTDCNAQTAKFYYSYNGNSWTQ 486 Query: 460 IGQTLHMKYTLDH-FMGYXXXXFNYAT-RQPGGYADFDYFRY 499 +G TL M + F+GY FNY T GYADFDYF++ Sbjct: 487 LGSTLKMDFFYKLWFVGYRFALFNYTTGSDTSGYADFDYFKF 528 >pir||T30909 endo-1,4-beta-xylanase (EC 3.2.1.8) - Caldocellum saccharolyticum gb|AAB87371.1| xylanase [Caldicellulosiruptor saccharolyticus] Length = 1347 Score = 310 bits (794), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 150/309 (48%), Positives = 205/309 (66%), Gaps = 7/309 (2%) Query: 2 NTAKITNPVIWADVPDVDVIRVGPVFYMVSTSMHSMPGCPIMKSVNLKDWEIVGYVYDTF 61 N +NP+I +D+PD D+IRVG +YMVST+MH PG PIM S +L +W I+GYVYD Sbjct: 50 NNTISSNPIILSDIPDPDIIRVGNDYYMVSTTMHLTPGVPIMHSTDLVNWRIIGYVYDRL 109 Query: 62 EENEAHRLEDGEGIYGSGSWAASLRHKNGTFYVCFSSNDMDQFYIYQTRDIEHGPWERSV 121 E+N+AH L++G IYG G WA +R+ G FYV F + D + Y++ +++I GPWER Sbjct: 110 EDNDAHNLKNGMNIYGKGQWAPCIRYYKGKFYVLFGALDTGKTYLFSSKNIT-GPWERVE 168 Query: 122 IPGLYHDPALLLDDDGRNYVIYGNGDIRVQELTADLTAVKPGGTDQLLLEGERKDIMLRI 181 HDP+LL DD+G+ Y+IYG +IRV+EL DL A+ G ++++++ + + Sbjct: 169 FNEYLHDPSLLFDDNGKAYIIYGGSEIRVKELMPDLKAINLKGLNKVIIKSKIDGLE--- 225 Query: 182 EGCHAHKRDGYYFLFFIEWPSAGNQRRRQLCYRSRELLGPYEHRVVLDDDLGYRNNGVAQ 241 EG HA+K +G Y++ I W G R + YR+ ++ GPYE RVVL D LGY+NNGVAQ Sbjct: 226 EGSHAYKINGKYYITTIRWEKGG--IREECVYRADKIDGPYEGRVVLSDTLGYKNNGVAQ 283 Query: 242 GGIVDTPDGYWYAVLFQDHGAVGRIPCVFPLTWENNWPVIGD-GGKAPLSFETKLPAGEP 300 GG++DTPDG WYA+LFQDH AVGR+P + P+ WEN WPV GD GK PL F + Sbjct: 284 GGLIDTPDGKWYAMLFQDHDAVGRVPVLVPVRWENGWPVFGDEKGKVPLKFVKPGQSSFE 343 Query: 301 KPLVISDEF 309 +V SDEF Sbjct: 344 TEVVKSDEF 352 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 117/197 (59%), Gaps = 7/197 (3%) Query: 306 SDEFEYTENRLALQWQWNHNPDNGLWSVTERPGYLRLRTGRIADDVLLARNTLTQRTEGP 365 S+E + L L WQWNHNPDN WS+ ER G+LRL+T + D+ ARNTLTQRT GP Sbjct: 534 SEEVAPNGSVLNLTWQWNHNPDNSKWSLLERKGFLRLKTCNVVSDIQQARNTLTQRTLGP 593 Query: 366 ASSAETMLHVSGLSAGDRAGMVALQNGYGTVEVAAGEQGQLDVNMCINGDKGTEVVESVP 425 S ++ V + GD AG+ A Q YG + V ++ + + M +KG E VE Sbjct: 594 KCSGWILMDVRNMKDGDYAGLAAFQKEYGFIGVKKQDK-EFYIVMV---EKGKE-VEYTK 648 Query: 426 FTGERIGLRIDFNFEDGVDEARFFYSGDGEVWHPIGQTLHMKYTLDHFMGYXXXXFNYAT 485 + L+IDF+FE +D+A F+YS +G W G L M+YT+ HFMGY FN+AT Sbjct: 649 LQQSMVYLKIDFDFE--IDKAYFYYSYNGINWIKFGSDLTMRYTIPHFMGYRFAIFNFAT 706 Query: 486 RQPGGYADFDYFRYHRE 502 +Q GGY D D+F++ + Sbjct: 707 KQTGGYVDIDFFKFSNK 723 >gb|EAA61146.1| hypothetical protein AN7275.2 [Aspergillus nidulans FGSC A4] Length = 503 Score = 254 bits (649), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 169/510 (33%), Positives = 260/510 (50%), Gaps = 47/510 (9%) Query: 4 AKITNPVIWADVPDVDVIRVGPVFYMVSTSMHSMPGCPIMKSVNLKDWEIVGYVYDTFEE 63 A I+NP+ WAD D+D+IRV FY +++MH PG PI++S +L +WE G+ Sbjct: 7 ADISNPIFWADFADIDIIRVNDTFYYSASNMHYSPGAPILRSYDLLNWEFAGHSIPELTF 66 Query: 64 NEAHRLEDGEGIYGSGSWAASLRHKNGTFYVCFSSNDMDQFYIYQTRDIEHGPWER-SVI 122 + L+DG+ Y G+WA++L+++ T + YIY D+ GPW + S I Sbjct: 67 GPNYYLDDGQQAYIKGTWASTLQYRPSTSTFYWMGCIDGTTYIYTAPDV-GGPWTKASTI 125 Query: 123 PGLYHDPALLLDDDGRNYVIYGNGDIRVQELTAD-LTAVKPGGTDQLLLEGERKDIMLRI 181 Y+D LL+ D + YV YGN I V EL+ D L V ++QL+ D + Sbjct: 126 NTCYYDCGLLITSDDKMYVAYGNNGISVAELSEDGLGEV----SNQLVFP---SDDAGYL 178 Query: 182 EGCHAHKRDGYYFLFFIEWPSAGNQRRRQLCYRSRELLGPYEHRVVLD------DDLGYR 235 EG ++RDG +++F + + + LGPYE R+++ D GY Sbjct: 179 EGSRFYERDGKFYIF-----TTHPANEEHVLMSNSGPLGPYERRLLISNAGTPVDGGGYP 233 Query: 236 NNGVAQGGIVDTPDGYWYAVLFQDHGAVGRIPCVFPLTWENN-WPVIG--DGGKAPLSFE 292 + QGGIVDTP+G WY + F D GRIP + P+ W ++ WP + DG S Sbjct: 234 H----QGGIVDTPNGDWYYMAFVDVYPGGRIPVLAPIIWNSDGWPYVELVDGA---WSVT 286 Query: 293 TKLPAGEPKPLVISDEFEYTEN----RLALQWQWNHNPDNGLWSVTERPGYLRLRTGRIA 348 PA P +S YT+ +L+ QW+WNHNPDN WS+ E + L T + Sbjct: 287 YDAPAINPPSTPVSSFEPYTDTFTVEKLSPQWEWNHNPDNAKWSIGEG---VTLTTASLT 343 Query: 349 DDVLLARNTLTQRTEGPASSAETMLHVSGLSAGDRAGMVALQNGYGTVEVAA-GEQGQLD 407 +D+ A+NTLT R GP S+A L++S +++GDRAG+ L++ + V G ++ Sbjct: 344 NDLYAAKNTLTHRILGPKSTATIHLNISSMASGDRAGLALLRHHSAWIGVVNDGSTTRIA 403 Query: 408 VNMCINGDK-------GTEVVESVPFTGERIGLRIDFNFEDGVDEARFFYSGDGEVWHPI 460 V + D GTEV + ++ + LR++ + G +F +SGDG + + Sbjct: 404 VTTGLEMDSEWNTVSTGTEVA-TAEYSNSEVWLRVEADISPGAGSGQFSFSGDGTTFTDL 462 Query: 461 GQTLHMKYTLDHFMGYXXXXFNYATRQPGG 490 G + + + FMGY FN+AT + GG Sbjct: 463 GGSYTLNNNWEFFMGYRFGIFNHATTELGG 492 >gb|EAA49824.1| hypothetical protein MG09988.4 [Magnaporthe grisea 70-15] Length = 560 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 170/524 (32%), Positives = 259/524 (49%), Gaps = 55/524 (10%) Query: 3 TAKITNPVIWADVPDVDVIRVGPVFYMVSTSMHSMPGCPIMKSVNLKDWEIVGYVYDTFE 62 +A TNP++W D+PD+DV RVG VFY +++ PG P+ KS +L +W V + + Sbjct: 39 SATFTNPILWEDLPDIDVFRVGDVFYKTTSTFAFSPGAPVHKSYDLANWTPVSHSVPRLD 98 Query: 63 ENEAHRLED-GEGIYGSGSWAASLRHK--NGTFYVCFSSNDMDQFYIYQT-------RDI 112 + L G Y G WA+S+R++ N FY + Y+Y + + Sbjct: 99 FGNEYNLNGAGSRAYVKGIWASSMRYRASNDMFYWMGCIQSTGKTYVYTSAGSRAKDNNG 158 Query: 113 EHGPW---ERSVIPGLYHDPALLLDDDGRNYVIYGNGDIRVQELTAD-LTAVKPGGTDQL 168 E W + SVI Y+D +L+DD+ YV+YGN + V +L+AD L+ V+ + Q+ Sbjct: 159 EAQSWNWKQSSVINKCYYDNGILVDDNDTMYVVYGNRKLTVAQLSADGLSEVR---SQQV 215 Query: 169 LLEGERKDIMLRIEGCHAHKRDGYYFLFFIEWPSAGNQRRRQLCYRSRELLGPYEHRVVL 228 G+ + +EG H +K G+Y++ + S + RSR GPYE RV+ Sbjct: 216 YDSGD-----IYLEGAHMYKIKGFYWIVPTKVASG------EYVLRSRSPFGPYEARVLF 264 Query: 229 DDDLGYRNNG--VAQGGIVDTPDGYWYAVLFQDHGAVGRIPCVFPLTW-ENNWP-VIGD- 283 D+ G +N QGG+VDT DG W+ + F D GRIP + PLTW +NWP ++ D Sbjct: 265 DNVPGPLSNAGWAHQGGMVDTKDGNWHYIAFLDAYPGGRIPVMAPLTWTSDNWPQLVKDS 324 Query: 284 ----GGKAPLSFETKLPAGEPKPLVISDEFEYTENRLALQWQWNHNPDNGLWSVTERPGY 339 G P+ T P+ + + +T + L +W+WNHNPD + + G Sbjct: 325 QGRWGTSYPMPVRTSKTVPGPRGVDL-----FTGSALGPRWEWNHNPDASKFRLAGGSGG 379 Query: 340 LRLRTGRIADDVLLARNTLTQRTEGPASSAETMLHVSGLSAGDRAGMVALQN--GYGTVE 397 L L+T + DD+ ARNTLT R GP ++A L +S + GDRAG+ ++ GY V Sbjct: 380 LVLQTATVTDDLFNARNTLTHRITGPRTTATLQLDISQMRDGDRAGLAMFRDKAGYIGVH 439 Query: 398 VAAGEQGQLDVNMC------INGDKGTEVVESVPFTGERIGLRIDFNFEDG-----VDEA 446 A G + +N + KG+ V TG ++ LR+D + V +A Sbjct: 440 RANGNAQLVRLNGVNLGSGWVTESKGSVVATGPNVTGGKVWLRVDADITPAFGLQPVRQA 499 Query: 447 RFFYSGDGEVWHPIGQTLHMKYTLDHFMGYXXXXFNYATRQPGG 490 F YS DG + +G + M + F GY FN+AT+ GG Sbjct: 500 NFSYSTDGNTFTNLGPSFTMINEWNFFTGYRFGVFNFATQALGG 543 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.140 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 871,295,728 Number of extensions: 40995938 Number of successful extensions: 71766 Number of sequences better than 1.0e-05: 77 Number of HSP's gapped: 71522 Number of HSP's successfully gapped: 81 Length of query: 503 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 373 Effective length of database: 404,274,708 Effective search space: 150794466084 Effective search space used: 150794466084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)