BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0011.p (199 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693447.1| signal peptidase I [Oceanobacillus iheyensis HT... 163 2e-39 ref|NP_242996.1| signal peptidase (type I) [Bacillus halodurans]... 158 6e-38 ref|NP_831060.1| Signal peptidase I [Bacillus cereus ATCC 14579]... 157 9e-38 ref|NP_977710.1| signal peptidase I [Bacillus cereus ATCC 10987]... 157 2e-37 ref|NP_655176.1| Peptidase_S26, Signal peptidase I [Bacillus ant... 156 2e-37 >ref|NP_693447.1| signal peptidase I [Oceanobacillus iheyensis HTE831] dbj|BAC14482.1| signal peptidase I [Oceanobacillus iheyensis HTE831] Length = 197 Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 75/123 (60%), Positives = 98/123 (79%), Gaps = 2/123 (1%) Query: 33 SRASGGEPALFGYEIKTVLSGSMEPGIQTGSIVALKPGGDMTRFKKGDVITFMSEDNILI 92 ++ASGGEP LFG + KTVLSGSMEPGIQTGS++A++ GGDMTRF++ DVITFM ED+ L+ Sbjct: 34 TKASGGEPELFGLQFKTVLSGSMEPGIQTGSVIAVETGGDMTRFQEDDVITFMEEDSKLV 93 Query: 93 THRIVDASAKNAAGEVVYRTKGDNNDAVDMTPVSSGNVVAEYTGVTVPYIGYAMNFAASK 152 THRI + N ++Y TKGDNN+A D+ PV + NVVAEYTG TVPY+GY ++FA ++ Sbjct: 94 THRITEVL--NNGEHIMYETKGDNNNAADINPVFAENVVAEYTGFTVPYLGYLVSFAQTQ 151 Query: 153 AGS 155 G+ Sbjct: 152 NGA 154 >ref|NP_242996.1| signal peptidase (type I) [Bacillus halodurans] pir||B83916 signal peptidase (type I) sipW [imported] - Bacillus halodurans (strain C-125) dbj|BAB05849.1| signal peptidase (type I) [Bacillus halodurans] Length = 191 Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 81/160 (50%), Positives = 104/160 (65%), Gaps = 3/160 (1%) Query: 5 MLIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSI 64 M I KI+S +++ S ASGG+P +FG+++ VLSGSMEP TGSI Sbjct: 3 MKILKIISKSMTFLLFLLMISVAMLSIISHASGGKPTVFGHQLNVVLSGSMEPAFHTGSI 62 Query: 65 VALKP-GGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMT 123 +A+K G+ T F+ GDVITF+ EDN L+THRIV+ V Y TKGDNNDA D+ Sbjct: 63 IAVKQVEGNGTGFQAGDVITFLKEDNTLVTHRIVEVLQN--GDHVQYVTKGDNNDAADLE 120 Query: 124 PVSSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163 PV + NVV EYTG TVPY+GY + FA +K G+ +LMIVPG Sbjct: 121 PVLAANVVGEYTGFTVPYLGYILTFATTKEGTALLMIVPG 160 >ref|NP_831060.1| Signal peptidase I [Bacillus cereus ATCC 14579] gb|AAP08261.1| Signal peptidase I [Bacillus cereus ATCC 14579] Length = 189 Score = 157 bits (398), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 6 LIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSIV 65 LI KI+S+ +S S+ASGG+P + GY+ K+VLSGSMEP TGSI+ Sbjct: 3 LIWKIISNAISFVLFALMVFLAFVVISSKASGGDPTVMGYQFKSVLSGSMEPTFLTGSII 62 Query: 66 ALKPGGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMTPV 125 A++P D ++++KGDVITF +D +ITHRI+ K+ G+V+Y TKGDNN+ D+ PV Sbjct: 63 AIEPNKDGSKYQKGDVITFKEKDQKIITHRII--GVKDTNGKVMYETKGDNNNGPDLEPV 120 Query: 126 SSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163 + NVV +Y +TVPY+GY +N+A SKAG+ +L+I+PG Sbjct: 121 LAENVVGKYADITVPYVGYLLNYANSKAGAALLLIIPG 158 >ref|NP_977710.1| signal peptidase I [Bacillus cereus ATCC 10987] gb|AAS40318.1| signal peptidase I [Bacillus cereus ATCC 10987] Length = 189 Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 6 LIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSIV 65 LI K++S+ +S S+ASGG+P + GY+ K+VLSGSMEP TGSI+ Sbjct: 3 LIWKVISNVISFVLFALMICLAFVVISSKASGGDPTVMGYQFKSVLSGSMEPTFLTGSII 62 Query: 66 ALKPGGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMTPV 125 A++P D ++++KGDVITF +D +ITHRI+ K+ G+V+Y TKGDNN+ D+ PV Sbjct: 63 AIEPTKDGSKYQKGDVITFKEKDEKIITHRII--GVKDTNGKVMYETKGDNNNGPDLEPV 120 Query: 126 SSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163 + NV+ +Y +TVPY GYA+N+A SKAG+ +L+I+PG Sbjct: 121 LADNVIGKYADITVPYAGYALNYANSKAGAALLLIIPG 158 >ref|NP_655176.1| Peptidase_S26, Signal peptidase I [Bacillus anthracis A2012] ref|NP_843758.1| signal peptidase I [Bacillus anthracis str. Ames] gb|AAP25244.1| signal peptidase I [Bacillus anthracis str. Ames] Length = 189 Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 6 LIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSIV 65 LI K++S+ +S S+ASGG+P + GY+ K+VLSGSMEP TGSI+ Sbjct: 3 LIWKVISNVISFVLFALMVCLAFVVISSKASGGDPTVMGYQFKSVLSGSMEPTFLTGSII 62 Query: 66 ALKPGGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMTPV 125 A++P D ++++KGDVITF +D +ITHRI+ K+ G+V+Y TKGDNN+ D+ PV Sbjct: 63 AIEPTKDGSKYQKGDVITFKEKDEKIITHRII--GVKDTNGKVMYETKGDNNNGPDLEPV 120 Query: 126 SSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163 + NV+ +Y +TVPY GYA+N+A SKAG+ +L+I+PG Sbjct: 121 LAENVIGKYADITVPYAGYALNYANSKAGAALLLIIPG 158 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 237,610,916 Number of extensions: 8165736 Number of successful extensions: 13000 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 13014 Number of HSP's successfully gapped: 16 Length of query: 199 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 80 Effective length of database: 434,140,797 Effective search space: 34731263760 Effective search space used: 34731263760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 123 (52.0 bits)