BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0206.0005.p
         (187 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_815495.1| lipoprotein, putative [Enterococcus faecalis V5...    89   4e-17
ref|NP_268013.1| hypothetical protein L107870 [Lactococcus lacti...    79   7e-14
gb|AAB69173.1| unknown [Lactococcus lactis]                            78   9e-14

>ref|NP_815495.1| lipoprotein, putative [Enterococcus faecalis V583]
 gb|AAO81565.1| lipoprotein, putative [Enterococcus faecalis V583]
          Length = 203

 Score = 89.4 bits (220), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 4/125 (3%)

Query: 48  DAVTSASVVDNGEDFKKAISKEGTWIAATLKDLSFTEDLVVEGEFSNKGKPA----RKIA 103
           + V+ AS+    E+ + A+S +G WI A   +++F +++ V G F +KGK +    RK+A
Sbjct: 58  EVVSGASISAKPEELEMALSDKGNWIVAATDNVTFDKEVTVAGTFHDKGKDSNDVYRKLA 117

Query: 104 LYTQDADHNITNSFRLAAPKITIKSENTQIQGGTFVGDVYVEANGFKVVNATIEGNVYFS 163
           LY+QD +  +T  + +  PK+ + SEN  I  GT  GD+ V+ANGF +    + GN+ F 
Sbjct: 118 LYSQDDNKKVTAEYEITVPKLIVSSENFNIVHGTVKGDIEVKANGFTLNGTKVNGNITFD 177

Query: 164 DDKYQ 168
             +Y+
Sbjct: 178 KQEYK 182


>ref|NP_268013.1| hypothetical protein L107870 [Lactococcus lactis subsp. lactis]
 pir||H86856 hypothetical protein ytcC [imported] - Lactococcus lactis subsp.
           lactis (strain IL1403)
 gb|AAK05954.1| HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
          Length = 381

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 11/142 (7%)

Query: 57  DNGEDFKKAISKEGTWIAATLKDLSFT-EDLVVEGEFSNKGKPARKIALYTQDADHNITN 115
           +N  D +K  +K G W+ AT  D+  + + L VEG F   G+ ARK+A+Y QD+ H IT+
Sbjct: 53  NNFSDLQKGFAKNGAWLNATKGDMDASGKTLTVEGLFLGDGQVARKLAIYNQDSSHKITD 112

Query: 116 SFRLAAPKITIKSENTQIQGGTFVGDVYVEANGFKVV-------NATIEGNVYFSDDKYQ 168
            + L   KI +KS    I  GT  G+V V A GF           ATI+GN+ F+     
Sbjct: 113 RYTLTVDKIEVKSPGFYISNGTVKGNVDVFATGFHGQTGTGVEGQATIDGNLTFASQDLL 172

Query: 169 ATYSA---ADQGKVTGVTEVKK 187
             Y+    A + KVTG T V K
Sbjct: 173 DAYNKLPDAQKVKVTGTTSVVK 194



 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 16/141 (11%)

Query: 62  FKKAISKEGTWIAATLKDLSFT-EDLVVEGEFSN-KGKPARKIALYTQDADHNITNSFRL 119
            KKA+ K G W+ AT  D+  + +DL ++G F N K    R +A+  Q+  H +T S+ L
Sbjct: 238 LKKALGKNGAWLVATNADVDASGKDLTIDGTFLNEKSAVQRTLAMIKQNDQHQVTKSYTL 297

Query: 120 AAPKITIKSENTQIQGGTFVGDVYV-----------EANGFKVVNATIEGNVYFSDDKYQ 168
              ++ + S    ++GG   GDVYV           +    + + + I GN+YF+  +  
Sbjct: 298 TVKRLIVNSPAFDLEGGNIKGDVYVGKDASIMARDMKGTDGQSIQSEITGNLYFATQEQL 357

Query: 169 ATY---SAADQGKVTGVTEVK 186
            TY    AA+Q KV+G   VK
Sbjct: 358 DTYKALPAANQFKVSGEVAVK 378


>gb|AAB69173.1| unknown [Lactococcus lactis]
          Length = 300

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 11/141 (7%)

Query: 58  NGEDFKKAISKEGTWIAATLKDLSFT-EDLVVEGEFSNKGKPARKIALYTQDADHNITNS 116
           N  D +K  +K G W+ AT  D++ + + L VEG F   G+ ARK+A+Y QD+ H IT  
Sbjct: 67  NFSDLQKGFAKNGAWLNATKGDMNASGKTLTVEGLFLGDGQVARKLAIYNQDSSHKITAR 126

Query: 117 FRLAAPKITIKSENTQIQGGTFVGDVYVEANGFKVV-------NATIEGNVYFSDDKYQA 169
           + L   KI +KS    I  GT  G+V V A GF           ATI+GN+ F+      
Sbjct: 127 YTLTVDKIEVKSPGFYISNGTVKGNVDVFATGFHGQTGTGVEGQATIDGNLTFASQDLLD 186

Query: 170 TYSA---ADQGKVTGVTEVKK 187
            Y+    A + KVTG T V K
Sbjct: 187 AYNKLPDAQKVKVTGTTSVVK 207


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.130    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 219,563,818
Number of extensions: 7951812
Number of successful extensions: 16339
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 16332
Number of HSP's successfully gapped: 4
Length of query: 187
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 69
Effective length of database: 436,855,896
Effective search space: 30143056824
Effective search space used: 30143056824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 122 (51.6 bits)