BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0009.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241216.1| oligopeptide ABC transporter (ATP-binding prote... 266 5e-70 ref|NP_228311.1| oligopeptide ABC transporter, ATP-binding prote... 261 8e-69 ref|ZP_00078824.1| COG0444: ABC-type dipeptide/oligopeptide/nick... 260 2e-68 ref|NP_346821.1| Oligopeptide transport ATP-binding protein [Clo... 258 1e-67 ref|NP_618344.1| nickel ABC transporter, ATP-binding protein [Me... 256 3e-67 >ref|NP_241216.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||F83693 oligopeptide ABC transporter (ATP-binding protein) appD [imported] - Bacillus halodurans (strain C-125) dbj|BAB04069.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 329 Score = 266 bits (679), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 128/254 (50%), Positives = 184/254 (72%) Query: 7 LLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPGR 66 LL +R L+T F T+ AV +V+ VS EV+ + VA+VGESGCGKSVT++S++GL+ PG+ Sbjct: 6 LLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGK 65 Query: 67 VEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKKV 126 + G++ G +L S+RE RKLR E+++IFQ+P+ +L+PL IG Q+ E ++ H++V Sbjct: 66 IVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQHQQV 125 Query: 127 SRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPTT 186 +++EAK +E +++ G+ E +Y YP Q+SGGM QRVMIA+AL +LLIADEPTT Sbjct: 126 TKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPTT 185 Query: 187 ALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTLF 246 ALDV QA+IL+ + ++ ILLITHD GVVAE+AD V VM +G++VE +V+TLF Sbjct: 186 ALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTLF 245 Query: 247 ANPVHPYTRQLLSS 260 A P HPYT+ LL+S Sbjct: 246 ATPAHPYTQGLLAS 259 >ref|NP_228311.1| oligopeptide ABC transporter, ATP-binding protein [Thermotoga maritima] pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8) gb|AAD35586.1| oligopeptide ABC transporter, ATP-binding protein [Thermotoga maritima] Length = 327 Score = 261 bits (668), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 131/251 (52%), Positives = 180/251 (71%) Query: 10 IRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPGRVEK 69 + +L+T F T+D V AVD VS EVR + + +VGESG GKSVT++S++ LLD G++ Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVD 60 Query: 70 GEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKKVSRK 129 G++ G NL E S+ E+RK+R KEIA+IFQ+PM AL+P+ IG QI E ++LH+ VS K Sbjct: 61 GKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEK 120 Query: 130 EAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPTTALD 189 EA+ +A++ +R+ G+ +PE +YP Q+SGGM QR MIA+AL LLIADEPTTALD Sbjct: 121 EARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALD 180 Query: 190 VMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTLFANP 249 V QA+IL+ + ++ G+ I+LITHD GVVAE++D V VM +GK+VE G+V T+F P Sbjct: 181 VTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEP 240 Query: 250 VHPYTRQLLSS 260 HPYT LL S Sbjct: 241 KHPYTYALLES 251 >ref|ZP_00078824.1| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Methanosarcina barkeri] Length = 270 Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 127/258 (49%), Positives = 177/258 (68%) Query: 3 TETPLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLD 62 +E +L IR L + +DQ + AV ++ + R +I ALVGESG GKS A++V+G+ D Sbjct: 11 SENAVLDIRGLSLDYIMQDQNIHAVVNLDLAARMGKITALVGESGSGKSTVALAVMGIQD 70 Query: 63 PPGRVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVML 122 + GE+ L G ++ K+++R S IIFQDP+++L+PLL +G+Q+ ET+++ Sbjct: 71 ENAVISSGEIHLAGTDILSMPKKDMRPYISNHTGIIFQDPIDSLNPLLTVGEQLVETILI 130 Query: 123 HKKVSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIAD 182 H+K+++K+A+ +AL Q+ L PE L KYPF +SGGMCQRVMIAIA + LLIAD Sbjct: 131 HEKITKKQARTIALNQLMAVSLPQPEELMKKYPFMLSGGMCQRVMIAIASVFRPPLLIAD 190 Query: 183 EPTTALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNV 242 EPTTALDV QA+IL +LD +R G ILLITHD GVVAE+AD V +M+ G IVE+G V Sbjct: 191 EPTTALDVTVQAQILHQLDSMRKRNGTAILLITHDLGVVAEIADDVCIMKDGHIVESGTV 250 Query: 243 YTLFANPVHPYTRQLLSS 260 +F NP H YTRQLL++ Sbjct: 251 DDIFYNPQHTYTRQLLAA 268 >ref|NP_346821.1| Oligopeptide transport ATP-binding protein [Clostridium acetobutylicum] pir||F96921 oligopeptide transport ATP-binding protein CAC0179 [imported] - Clostridium acetobutylicum gb|AAK78161.1| Oligopeptide transport ATP-binding protein [Clostridium acetobutylicum] Length = 325 Score = 258 bits (658), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 125/261 (47%), Positives = 189/261 (72%), Gaps = 2/261 (0%) Query: 2 LTETPLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLL 61 ++ET LL++++L+T F T++ V AVDDVS E++ ++ +A+VGESGCGKS+TAMS++ L+ Sbjct: 1 MSET-LLQVKNLKTYFHTEEGTVKAVDDVSFEIKEKETLAIVGESGCGKSITAMSIMRLI 59 Query: 62 -DPPGRVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETV 120 +PPG++E GE+ G +L + + ++R++R +I++IFQ+PM +L+P+ +G+QI E + Sbjct: 60 PNPPGKIEGGEILFDGKDLIKMRQSDIREIRGNKISLIFQEPMTSLNPVFTVGEQIEEAL 119 Query: 121 MLHKKVSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLI 180 +LHKK+ +K+AK A++ + + E +Y YP ++SGGM QRV+IA+A+ RLLI Sbjct: 120 ILHKKMDKKQAKREAIKMLTMVRIPRAEEIYKAYPHELSGGMRQRVVIAMAISCSPRLLI 179 Query: 181 ADEPTTALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAG 240 ADEPTTALDV QA+IL + ++ I+LITHD G+VAE+ADYV VM +GKIVE Sbjct: 180 ADEPTTALDVTIQAQILDIMRELKEKVNTSIILITHDLGIVAEMADYVVVMYAGKIVEKA 239 Query: 241 NVYTLFANPVHPYTRQLLSSR 261 V L+ NP HPYT LL S+ Sbjct: 240 PVIELYKNPKHPYTVGLLKSK 260 >ref|NP_618344.1| nickel ABC transporter, ATP-binding protein [Methanosarcina acetivorans str. C2A] gb|AAM06824.1| nickel ABC transporter, ATP-binding protein [Methanosarcina acetivorans str. C2A] Length = 270 Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 127/258 (49%), Positives = 179/258 (69%) Query: 3 TETPLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLD 62 +E L IR L + DQ + AV D+++ + +I ALVGESG GKS A++V+G+ D Sbjct: 11 SEKAALDIRGLSLDYVMPDQNIHAVVDLNLVAKMGKITALVGESGSGKSTVALAVMGIQD 70 Query: 63 PPGRVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVML 122 + GE++L G ++ K+++R S IIFQDP+++L+PLL IG+Q+ ET+++ Sbjct: 71 KNAIISSGEIYLAGMDVLSIPKKDMRSYISNHAGIIFQDPIDSLNPLLTIGEQLMETILI 130 Query: 123 HKKVSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIAD 182 H+K+++K+A+A+AL Q+ L PE L KYPF +SGGMCQRVMIAIA + LLIAD Sbjct: 131 HEKITKKQARAIALNQLLAVSLPQPEELMKKYPFMLSGGMCQRVMIAIASVFHPPLLIAD 190 Query: 183 EPTTALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNV 242 EPTTALDV QA+IL +LD +R +G ILLITHD GVVAE+AD V +M+ G+IVE G V Sbjct: 191 EPTTALDVTVQAQILYQLDSMRKRDGTAILLITHDLGVVAEIADEVCIMKDGQIVERGTV 250 Query: 243 YTLFANPVHPYTRQLLSS 260 +F NP + YTR+LL++ Sbjct: 251 DDIFYNPQNMYTRKLLAA 268 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 358,915,675 Number of extensions: 13668943 Number of successful extensions: 99122 Number of sequences better than 1.0e-05: 15732 Number of HSP's gapped: 86019 Number of HSP's successfully gapped: 16714 Length of query: 261 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 138 Effective length of database: 423,280,401 Effective search space: 58412695338 Effective search space used: 58412695338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)