BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0008.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00021089.1| hypothetical protein [Chloroflexus aurantiacus] 227 2e-58 ref|NP_971878.1| oligopeptide/dipeptide ABC transporter, ATP-bin... 227 3e-58 ref|NP_244512.1| oligopeptide ABC transporter (ATP-binding prote... 217 2e-55 gb|EAI87278.1| unknown [environmental sequence] 214 1e-54 ref|NP_769509.1| ABC transporter ATP-binding protein [Bradyrhizo... 213 4e-54 >ref|ZP_00021089.1| hypothetical protein [Chloroflexus aurantiacus] Length = 371 Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/270 (43%), Positives = 172/270 (63%), Gaps = 1/270 (0%) Query: 2 YLLEAVELSKVYG-REGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLL 60 YL+E +L + G F+ + + AV+ +S +K E R + Sbjct: 15 YLIEIKDLRMYFPVTRGIIFQRRVGTVKAVDGVSFSIKRGETLGLVGESGCGKSTTGRAI 74 Query: 61 LGLERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRN 120 L L RP+SG+VL++GTD T + +R++R ++Q++FQ+ AS NP TV II EP+R Sbjct: 75 LQLYRPTSGQVLFEGTDLTKLKGNALRQMRRRVQMIFQDPYASLNPRMTVGDIIAEPIRV 134 Query: 121 YGMGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEP 180 + + RA R+RV + L LVGL + RYPHE SGGQ+QRIGIARA+A+ P+ ++CDEP Sbjct: 135 HKLREGRAVRERVEELLHLVGLNPAFANRYPHEFSGGQRQRIGIARALAVEPDFVVCDEP 194 Query: 181 FSSLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGG 240 S+LD S++ Q++NLL+EL+ +LGL Y+FI HDLSVV+ DR AVM+ G++VE G Sbjct: 195 VSALDVSIQAQVVNLLEELQDKLGLTYLFIAHDLSVVNHISDRVAVMYLGKVVELAEGPK 254 Query: 241 LMKQAVHPYTQKLIASVPVQDPRLRKSDDR 270 L +HPYTQ L+++VP+ DP++ K R Sbjct: 255 LYSMPLHPYTQALLSAVPIPDPKVEKQRRR 284 >ref|NP_971878.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Treponema denticola ATCC 35405] gb|AAS11789.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Treponema denticola ATCC 35405] Length = 323 Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 110/266 (41%), Positives = 169/266 (63%) Query: 2 YLLEAVELSKVYGREGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLLL 61 YLLE + LSK + F + + + AVN++++++KP E R +L Sbjct: 5 YLLETINLSKHFSESKSLFNWNPKSVKAVNNVNIKVKPKEVLGLVGESGCGKSTLGRTIL 64 Query: 62 GLERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRNY 121 L +SG++LY+G D ++ +M +R K+Q++FQ+ +S NP TV I+ PL + Sbjct: 65 RLLPATSGKILYKGDDILKYNNKQMFELRKKMQIIFQDVYSSLNPRMTVGDIVTAPLNVF 124 Query: 122 GMGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEPF 181 G+ + R+++V + LE VGL +YL R+PHE SGGQ+QRI IAR++ + PEL+ICDEP Sbjct: 125 KEGDKKYRQNKVIEMLEEVGLRAQYLNRFPHEFSGGQRQRIVIARSLIMNPELVICDEPV 184 Query: 182 SSLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGGL 241 S+LD S+R Q++NL+++LK + GL YIFI+HDLSVV+ DR AVM+ G ++E L Sbjct: 185 SALDVSVRAQVLNLMKKLKEEKGLTYIFISHDLSVVNHISDRIAVMYLGNVIELAERDEL 244 Query: 242 MKQAVHPYTQKLIASVPVQDPRLRKS 267 K A HPYT+ L+++VP+ RK+ Sbjct: 245 FKNAFHPYTKALLSAVPIASTEARKN 270 >ref|NP_244512.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07364.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 322 Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/264 (42%), Positives = 161/264 (60%) Query: 3 LLEAVELSKVYGREGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLLLG 62 LLE L+K + G +F + ++ AV++LS + E + +L Sbjct: 5 LLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAILR 64 Query: 63 LERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRNYG 122 L PSSG V + GT+ T S MR+ R +Q++FQ+ AS NP T+E+II EPL + Sbjct: 65 LIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREPLIVHQ 124 Query: 123 MGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEPFS 182 +G + + +RV + LE VGL + RYPH+ SGGQ+QRIGIARA+A+ P+L+ICDEP S Sbjct: 125 IGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICDEPVS 184 Query: 183 SLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGGLM 242 +LD S++ Q++NL+ +LK L YIFI HDLSVV DR AVM+ G++VE T L Sbjct: 185 ALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATKDQLF 244 Query: 243 KQAVHPYTQKLIASVPVQDPRLRK 266 + HPYT+ L+++VPV DP K Sbjct: 245 ENPKHPYTRALLSAVPVPDPDAAK 268 >gb|EAI87278.1| unknown [environmental sequence] Length = 634 Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/254 (43%), Positives = 155/254 (61%), Gaps = 7/254 (2%) Query: 13 YGREGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLLLGLERPSSGRVL 72 +GR G I AV ++S L+P E R ++GL P+ G V Sbjct: 343 FGRAG-------GNIHAVENISFSLQPGETLGLVGESGCGKSTTGRSIIGLTSPTRGEVF 395 Query: 73 YQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRNYGMGNVRARRDR 132 ++G D TD + +M + R K+Q++FQ+ AS NP TV QII EP+ +G+ R Sbjct: 396 FEGVDLTDLNNKEMIQYRKKMQMIFQDPFASLNPRMTVGQIIAEPIIVHGLETKLGSNSR 455 Query: 133 VAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEPFSSLDASLRRQM 192 V K L VGL+ +Y RYPHELSGGQ+QRIGIARA+AL P+LII DE S+LD S++ Q+ Sbjct: 456 VIKLLNRVGLDEQYYSRYPHELSGGQRQRIGIARALALEPKLIIADEAVSALDVSIQAQV 515 Query: 193 MNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGGLMKQAVHPYTQK 252 +NL+ EL+ + GL Y+FI+HD++V+ R R VM+ G+IVE + + HPYT+K Sbjct: 516 VNLMMELQEEFGLTYLFISHDMAVIERVSHRIGVMYLGEIVEIGLRSQIFENPQHPYTKK 575 Query: 253 LIASVPVQDPRLRK 266 L+A+VP+ DP RK Sbjct: 576 LMAAVPIADPTKRK 589 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 112/180 (62%), Gaps = 9/180 (5%) Query: 85 KMRRIRGK-LQVVFQNSPASFNPLFTVEQIIGEPLRNYGMGNVRARRDRVAKTLELVGL- 142 KMR IRG + ++FQ S NP+FT+ I E + + + +++ LE++ L Sbjct: 101 KMRDIRGNDISMIFQEPMTSLNPVFTIGMQITETIIKH---QGKTKKEAFEIALEMIKLV 157 Query: 143 ----EGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEPFSSLDASLRRQMMNLLQE 198 + L +YPHELSGG +QR+ IA A++ +P L+I DEP ++LD +++ Q+++L++ Sbjct: 158 RIPEPEKRLNQYPHELSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQILDLIKM 217 Query: 199 LKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGGLMKQAVHPYTQKLIASVP 258 L+ +G++ +FITHD+ VV+ DR VM G+ VEE T + + HPYT+ L+A+VP Sbjct: 218 LQRDIGMSVMFITHDMGVVAEVADRVVVMFAGKKVEEGTAVEIFQNPKHPYTRSLLAAVP 277 >ref|NP_769509.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum] dbj|BAC48134.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 367 Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 115/267 (43%), Positives = 159/267 (59%) Query: 1 MYLLEAVELSKVYGREGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLL 60 M LLE L K + E F + + AV+ +S L+ + +RL+ Sbjct: 2 MALLEVEGLVKHFVAERSLFGRALAHVKAVDGVSFSLEAGKTLALVGESGCGKSTVSRLV 61 Query: 61 LGLERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRN 120 L L P +G + + G D +R R + Q++FQ+ AS NP TV QI+ EPL Sbjct: 62 LRLIEPDAGTIRFGGRDLLSLDAGALRAFRREAQIIFQDPYASLNPRMTVGQILTEPLAL 121 Query: 121 YGMGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEP 180 + + RR+RVA+ L LVGLE R RYPHE SGGQ+QRI IARA+A+ P+LIICDEP Sbjct: 122 HDLVPPARRRERVAEILRLVGLEPRLERRYPHEFSGGQRQRIAIARALAVEPKLIICDEP 181 Query: 181 FSSLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGG 240 S+LD S+R Q++NLL+EL+ +LGLAYIF++HDL+VV D AVM+ GQIVE Sbjct: 182 VSALDVSIRSQILNLLRELQDRLGLAYIFVSHDLAVVKHIADHVAVMNLGQIVETAEADA 241 Query: 241 LMKQAVHPYTQKLIASVPVQDPRLRKS 267 L HPY++ L++++PV PR + S Sbjct: 242 LFAAPRHPYSRALLSAIPVPKPRAKSS 268 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 361,298,152 Number of extensions: 13305862 Number of successful extensions: 67579 Number of sequences better than 1.0e-05: 15625 Number of HSP's gapped: 61208 Number of HSP's successfully gapped: 16377 Length of query: 271 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 147 Effective length of database: 420,565,302 Effective search space: 61823099394 Effective search space used: 61823099394 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)