BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0204.0004.p
         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_814839.1| iron-sulfur cluster binding protein [Enterococc...    55   5e-07

>ref|NP_814839.1| iron-sulfur cluster binding protein [Enterococcus faecalis V583]
 gb|AAO80909.1| iron-sulfur cluster binding protein [Enterococcus faecalis V583]
          Length = 490

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 14/85 (16%)

Query: 1   MKTAGRLLASQALFGKALRFANPASRLISRH------------GRIARGPQLVRGWINAR 48
           M+  G+   S A+F  A++  + A+ ++S+             G + +GP LV+GW + R
Sbjct: 405 MRMVGKATGSPAMFKAAMKVDHAAAGILSKQKDITVENMYNHGGYLDKGPGLVKGWTDVR 464

Query: 49  DLSQPVRQQDSFRAWFDKRKGREGQ 73
           DL +P +  ++FR+WF  +K +EG+
Sbjct: 465 DLPRPPKSSENFRSWF--KKHQEGE 487


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 95,920,777
Number of extensions: 2699077
Number of successful extensions: 6993
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6994
Number of HSP's successfully gapped: 1
Length of query: 73
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 29
Effective length of database: 637,773,222
Effective search space: 18495423438
Effective search space used: 18495423438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)