BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0014.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623227.1| ABC-type phosphate transport system, permease c... 214 2e-54 ref|NP_348333.1| Permease component of ATP-dependent phosphate u... 209 5e-53 ref|NP_471970.1| similar to phosphate ABC transporter (permease ... 206 7e-52 ref|NP_977110.1| phosphate ABC transporter, permease protein, pu... 201 2e-50 ref|NP_654665.1| BPD_transp, Binding-protein-dependent transport... 201 2e-50 >ref|NP_623227.1| ABC-type phosphate transport system, permease component [Thermoanaerobacter tengcongensis] gb|AAM24831.1| ABC-type phosphate transport system, permease component [Thermoanaerobacter tengcongensis] Length = 295 Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/286 (41%), Positives = 168/286 (58%), Gaps = 13/286 (4%) Query: 11 RSQRNNKIANIAFYTLGALVMLLIFWLLFTILSKGLPSLRPDFLIKQPEEIDAGGGIGPV 70 +++ +KIA I FY + ++ + L+ IL +G L FL P+ ++AGGGIGP Sbjct: 2 KAKLYDKIATIYFYVVAGFLVAFLISLIGYILYQGRTRLNLSFLTSPPKFMEAGGGIGPQ 61 Query: 71 LXXXXXXXXXXXXXXXXXXXXXXXYMAEYAPDNRFTGALRICVESLSSVPSIVFGLLGLA 130 L YMAEYA FT +R+ VE+LSS+PSIV GL GL Sbjct: 62 LFNSIELLVITLIISVPIGLGAGIYMAEYARPGLFTEVIRLSVETLSSMPSIVVGLFGLL 121 Query: 131 IFAEYFNVGLTILGGGVSLALLNLPMLARVTEEAVRAVPGEIREAGYALGMTKFHVIRKV 190 +F G +++ G ++L +LNLP++ RV+E+A+++VP +REA +ALG TK+ I KV Sbjct: 122 VFVTMTGWGYSLMAGALALTVLNLPVMTRVSEDAIKSVPSSLREASFALGATKWQTITKV 181 Query: 191 VLPVAMPAIVTGVCLVAGRAFGESAVIILTAGLST----------SGEMWDFNLFSPGET 240 V+P AMP I+TG+ L AGR FGE+A ++ TAG+S+ S NLF P ET Sbjct: 182 VVPAAMPGILTGIILTAGRIFGEAAALLYTAGMSSPALNFSNLNPSSPTSPLNLFRPAET 241 Query: 241 LAVHLWYVQSEAIVEDARQIADKSAAVLVFVVLLINFMFRFPLWLG 286 LAV++W V SE + DARQIAD ++AVL+ VL N R WLG Sbjct: 242 LAVYIWKVNSEGLAPDARQIADGASAVLLLAVLTFNLFAR---WLG 284 >ref|NP_348333.1| Permease component of ATP-dependent phosphate uptake system [Clostridium acetobutylicum] pir||F97110 permease component of ATP-dependent phosphate uptake system [imported] - Clostridium acetobutylicum gb|AAK79673.1| Permease component of ATP-dependent phosphate uptake system [Clostridium acetobutylicum] Length = 294 Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 168/288 (58%), Gaps = 13/288 (4%) Query: 11 RSQRNNKIANIAFYTLGALVMLLIFWLLFTILSKGLPSLRPDFLIKQPEEIDAGGGIGPV 70 +S+ +KIA I Y + V++L+ + I+ +G SL FL P+ + GGGIGP Sbjct: 2 KSKLYDKIATIILYLISLFVVILLAAFIIFIIYRGRDSLNLSFLFGNPKIAEKGGGIGPE 61 Query: 71 LXXXXXXXXXXXXXXXXXXXXXXXYMAEYAPDNRFTGALRICVESLSSVPSIVFGLLGLA 130 L YM+EYA + R +R+C+E+++S+PSIV GL GL Sbjct: 62 LFNSFYMLIVSLLITVPIGIGAGIYMSEYAKEGRILNFIRLCIETMASLPSIVVGLFGLL 121 Query: 131 IFAEYFNVGLTILGGGVSLALLNLPMLARVTEEAVRAVPGEIREAGYALGMTKFHVIRKV 190 +F + G TIL G + + +LNLP + RV+E A+RA +++EA LG T + I+ + Sbjct: 122 VFVTMTHWGYTILSGALVITILNLPSMTRVSENAIRASSSKVKEASLGLGATNWQTIKNI 181 Query: 191 VLPVAMPAIVTGVCLVAGRAFGESAVIILTAGLSTSGEMWD----------FNLFSPGET 240 VLP AMP I+TG+ L AGR FGE+A ++ TAG+S +D F+LF P ET Sbjct: 182 VLPSAMPEILTGIILSAGRIFGEAAALLYTAGMSAPNLNFDTISLVDKTSAFSLFRPAET 241 Query: 241 LAVHLWYVQSEAIVEDARQIADKSAAVLVFVVLLINFMFRFPLWLGRR 288 LAVH+W + SE ++ DA +IA+ S+AVLV +VLL NFM R +GR+ Sbjct: 242 LAVHIWKLNSEGMIPDATKIANGSSAVLVLMVLLFNFMARI---IGRK 286 >ref|NP_471970.1| similar to phosphate ABC transporter (permease protein) [Listeria innocua] ref|NP_466020.1| similar to phosphate ABC transporter (permease protein) [Listeria monocytogenes EGD-e] pir||AC1762 phosphate ABC transporter (permease protein) homolog lin2640 [imported] - Listeria innocua (strain Clip11262) pir||AI1386 phosphate ABC transporter (permease protein) homolog lmo2497 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00575.1| lmo2497 [Listeria monocytogenes] emb|CAC97867.1| lin2640 [Listeria innocua] Length = 294 Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 114/281 (40%), Positives = 161/281 (57%), Gaps = 14/281 (4%) Query: 13 QRNNKIANIAFYTLGALVMLLIFWLLFTILSKGLPSLRPDFLIKQPEEIDAGGGIGPVLX 72 + +KIA FY + L+++++ LL IL KG+P L FL P+ AGGGIGP + Sbjct: 4 KTKDKIATGVFYAIAVLIVIILAGLLGYILVKGVPQLSWKFLTTPPQSFQAGGGIGPEIW 63 Query: 73 XXXXXXXXXXXXXXXXXXXXXXYMAEYAPDNRFTGALRICVESLSSVPSIVFGLLGLAIF 132 YMAEYA N T +R +E LSS+PSIV GL G +F Sbjct: 64 NSFYMLVITMIISVPISLGAGIYMAEYARKNWITDLIRTTIEVLSSLPSIVVGLFGFLVF 123 Query: 133 AEYFNVGLTILGGGVSLALLNLPMLARVTEEAVRAVPGEIREAGYALGMTKFHVIRKVVL 192 +++ G ++L + NLP+L RV EEA+ A+P REAG ALG++++ I +V++ Sbjct: 124 VIQMGWSFSVISGALTLTIFNLPLLIRVVEEALNAIPNTQREAGLALGLSRWETITRVLV 183 Query: 193 PVAMPAIVTGVCLVAGRAFGESAVIILTAGLSTSGEMWDF------------NLFSPGET 240 P A+PAI+TGV L AGR FGE+A +I TAG ST + DF N+F P ET Sbjct: 184 PAALPAIITGVILAAGRVFGEAAALIFTAGQST--PILDFTDWNPVNPASPLNIFRPAET 241 Query: 241 LAVHLWYVQSEAIVEDARQIADKSAAVLVFVVLLINFMFRF 281 LAVH+W + E I+ DA+ ++D ++AVL+ VLL N + R Sbjct: 242 LAVHIWKINGEGIMPDAQAVSDGASAVLILSVLLFNVLARL 282 >ref|NP_977110.1| phosphate ABC transporter, permease protein, putative [Bacillus cereus ATCC 10987] gb|AAS39718.1| phosphate ABC transporter, permease protein, putative [Bacillus cereus ATCC 10987] Length = 306 Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 117/275 (42%), Positives = 161/275 (58%), Gaps = 9/275 (3%) Query: 16 NKIANIAFYTLGALVMLLIFWLLFTILSKGLPSLRPDFLIKQPEEIDAGGGIGPVLXXXX 75 NK+ FY + ALV+ L+ +L+F IL KG P+FL +P AGGGIGP L Sbjct: 7 NKVWTGIFYAVAALVVALLVFLVFEILQKGWGFWDPNFLFGEPSNTRAGGGIGPQLFNSF 66 Query: 76 XXXXXXXXXXXXXXXXXXXYMAEYAPDNRFTGALRICVESLSSVPSIVFGLLGLAIFAEY 135 Y+AEYA RF +R+C+E+++S+PSIV GL GL +F Sbjct: 67 YMLVITLIISIPLGLGAGIYLAEYAKQGRFLNFVRLCIETMASLPSIVVGLFGLLVFVTM 126 Query: 136 FNVGLTILGGGVSLALLNLPMLARVTEEAVRAVPGEIREAGYALGMTKFHVIRKVVLPVA 195 G T++GG ++L +LNLP L RV E A+ VP ++EA LG TK+ I ++++P + Sbjct: 127 TGWGYTVMGGALALTILNLPGLTRVCENAISEVPANVKEASLGLGATKWQTITRIIIPSS 186 Query: 196 MPAIVTGVCLVAGRAFGESAVIILTAGLST---------SGEMWDFNLFSPGETLAVHLW 246 +P I+TGV L AGR FGE+A +I TAGL++ S N F P ETLAVH+W Sbjct: 187 LPQIITGVILAAGRIFGEAAALIYTAGLTSPILNSAADFSSPAHPLNPFRPAETLAVHIW 246 Query: 247 YVQSEAIVEDARQIADKSAAVLVFVVLLINFMFRF 281 + SE I+ DA+ IA KSAAVL+ +VLL N + R Sbjct: 247 KLNSEGIIPDAKLIATKSAAVLIIMVLLFNVISRL 281 >ref|NP_654665.1| BPD_transp, Binding-protein-dependent transport systems inner membrane component [Bacillus anthracis A2012] ref|NP_843242.1| phosphate ABC transporter, permease protein, putative [Bacillus anthracis str. Ames] gb|AAP24728.1| phosphate ABC transporter, permease protein, putative [Bacillus anthracis str. Ames] Length = 306 Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 117/275 (42%), Positives = 161/275 (58%), Gaps = 9/275 (3%) Query: 16 NKIANIAFYTLGALVMLLIFWLLFTILSKGLPSLRPDFLIKQPEEIDAGGGIGPVLXXXX 75 NK+ FY + ALV+ L+ +L+F IL KG P+FL +P AGGGIGP L Sbjct: 7 NKVWTGIFYAIAALVVALLVFLVFEILQKGWGFWDPNFLFGEPSNTRAGGGIGPQLFNSF 66 Query: 76 XXXXXXXXXXXXXXXXXXXYMAEYAPDNRFTGALRICVESLSSVPSIVFGLLGLAIFAEY 135 Y+AEYA RF +R+C+E+++S+PSIV GL GL +F Sbjct: 67 YMLVITLIISIPLGLGAGIYLAEYAKQGRFLNFVRLCIETMASLPSIVVGLFGLLVFVTM 126 Query: 136 FNVGLTILGGGVSLALLNLPMLARVTEEAVRAVPGEIREAGYALGMTKFHVIRKVVLPVA 195 G T++GG ++L +LNLP L RV E A+ VP ++EA LG TK+ I ++++P + Sbjct: 127 TGWGYTVMGGALALTILNLPGLTRVCENAISEVPSNVKEASLGLGATKWQTITRIIIPSS 186 Query: 196 MPAIVTGVCLVAGRAFGESAVIILTAGLST---------SGEMWDFNLFSPGETLAVHLW 246 +P I+TGV L AGR FGE+A +I TAGL++ S N F P ETLAVH+W Sbjct: 187 LPQIITGVILAAGRIFGEAAALIYTAGLTSPILNSAADFSSPAHPLNPFRPAETLAVHIW 246 Query: 247 YVQSEAIVEDARQIADKSAAVLVFVVLLINFMFRF 281 + SE I+ DA+ IA KSAAVL+ +VLL N + R Sbjct: 247 KLNSEGIIPDAKLIATKSAAVLIIMVLLFNVISRL 281 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.142 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 374,182,770 Number of extensions: 13243366 Number of successful extensions: 55306 Number of sequences better than 1.0e-05: 845 Number of HSP's gapped: 54952 Number of HSP's successfully gapped: 850 Length of query: 291 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 167 Effective length of database: 420,565,302 Effective search space: 70234405434 Effective search space used: 70234405434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 125 (52.8 bits)