BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0009.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832238.1| ABC transporter ATP-binding protein [Bacillus c... 288 6e-77 ref|ZP_00103624.1| COG1131: ABC-type multidrug transport system,... 288 1e-76 ref|NP_470263.1| similar to ABC transporter, ATP-binding protein... 286 4e-76 ref|NP_978851.1| ABC transporter, ATP-binding protein [Bacillus ... 284 1e-75 ref|NP_844909.1| ABC transporter, ATP-binding protein [Bacillus ... 270 2e-71 >ref|NP_832238.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP09439.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 241 Score = 288 bits (738), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 134/232 (57%), Positives = 182/232 (78%) Query: 5 HPVIAVTHVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQV 64 P I + V ++FG KEVL ++SLQVE+AE FG +GPSGSGKTTL+K++ GI+EAT G+V Sbjct: 3 QPSIILRTVSKSFGKKEVLHNLSLQVEKAEIFGFVGPSGSGKTTLIKMIAGINEATKGEV 62 Query: 65 EVLGVQMPKLSMLQQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVV 124 V MP L+ +++IGYMAQ+DALY ELSA EN +F A++YGL+ + RIA+V E+V Sbjct: 63 LVNNTNMPNLNEMKRIGYMAQADALYEELSAYENADFIATMYGLKGKRKKTRIAEVFELV 122 Query: 125 NLQEHLRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNG 184 L ++++K+V Q+SGGMK+RLSLAIALLHEP +LILDEPTVGIDP+LRK+IW++ L Sbjct: 123 QLSQYMKKQVQQFSGGMKKRLSLAIALLHEPEILILDEPTVGIDPLLRKTIWEKFYDLKK 182 Query: 185 KGTTIVLTTHVMDEAEKCDRLAMIRDGQLLAVDTPADLLKNTGAASMEEAFL 236 KGTTI++TTH+MDEAE C+RL +IR+G+L+AV T +L K + +E+ FL Sbjct: 183 KGTTIIVTTHIMDEAEFCERLGLIREGKLVAVGTTEELKKRVSSGRIEDVFL 234 >ref|ZP_00103624.1| COG1131: ABC-type multidrug transport system, ATPase component [Desulfitobacterium hafniense] Length = 244 Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 137/240 (57%), Positives = 181/240 (75%), Gaps = 1/240 (0%) Query: 1 MNQGHPVIAVTHVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEAT 60 M Q H I + V + FG K VLK+I L++ +G+LGPSG GKTT+VK++ GI EAT Sbjct: 1 MEQPH-CIVLRKVNKFFGKKHVLKEIDLEIPYGHIYGLLGPSGCGKTTIVKIIAGILEAT 59 Query: 61 SGQVEVLGVQMPKLSMLQQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADV 120 SG+ VLG +MP+LS++ ++GYMAQSDALY L+A ENL+FF ++YG+ G +R A+V Sbjct: 60 SGEAYVLGERMPRLSLMNKVGYMAQSDALYGTLTAAENLQFFGAIYGMGKGEIKKRTAEV 119 Query: 121 MEVVNLQEHLRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELR 180 ME+VNL EHL K V +SGGMKRRLSLA+A++H PP+L+LDEPTVGIDP+LR++IW EL Sbjct: 120 MELVNLTEHLHKPVQAFSGGMKRRLSLAMAVMHNPPVLVLDEPTVGIDPLLRRTIWAELN 179 Query: 181 TLNGKGTTIVLTTHVMDEAEKCDRLAMIRDGQLLAVDTPADLLKNTGAASMEEAFLYYGG 240 TL +G TI++TTHVMDEA+KC LAM+RDG+L+A T +L G +EEA +YYGG Sbjct: 180 TLARQGITILVTTHVMDEADKCHSLAMMRDGRLIAKGTSRELQDTIGVNDIEEASIYYGG 239 >ref|NP_470263.1| similar to ABC transporter, ATP-binding protein [Listeria innocua] pir||AD1548 ABC transporter, ATP-binding protein homolog lin0924 [imported] - Listeria innocua (strain Clip11262) emb|CAC96156.1| lin0924 [Listeria innocua] Length = 240 Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 133/233 (57%), Positives = 181/233 (77%) Query: 8 IAVTHVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQVEVL 67 I V+++ G K +L D+SL++E+ E FG++GPSG+GKTTLVK + G+++ATSGQ +VL Sbjct: 6 IDVSNLDVKIGKKPILSDMSLEIEKGEIFGLIGPSGAGKTTLVKTIIGMEKATSGQTKVL 65 Query: 68 GVQMPKLSMLQQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVVNLQ 127 G MP L ++ +IGYMAQSDALY++L+AKENL+FFASLY ++ + RI +VNLQ Sbjct: 66 GNVMPNLPVISKIGYMAQSDALYTDLTAKENLDFFASLYSIKGAAKKDRINYATNLVNLQ 125 Query: 128 EHLRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNGKGT 187 L K+V+ +SGGMKRRLSLAI++L +P +LILDEPTVGIDP LRK+IW+EL L G Sbjct: 126 TDLTKKVNNFSGGMKRRLSLAISVLADPDVLILDEPTVGIDPELRKTIWEELDDLKANGK 185 Query: 188 TIVLTTHVMDEAEKCDRLAMIRDGQLLAVDTPADLLKNTGAASMEEAFLYYGG 240 I++TTHVMDEAEKCDRLAMIR+G+++A+ TP +L T + +E+AFL +GG Sbjct: 186 CILVTTHVMDEAEKCDRLAMIRNGKIIAIGTPQELSSKTSSGKLEDAFLEFGG 238 >ref|NP_978851.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS41459.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 241 Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 130/232 (56%), Positives = 180/232 (77%) Query: 5 HPVIAVTHVRRAFGTKEVLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQV 64 P I + V ++FG KEVL ++SLQVE+AE FG++GPSGSGKTTL+KL+ GI+E T G+V Sbjct: 3 QPAIILRTVSKSFGKKEVLHNLSLQVEKAEIFGLVGPSGSGKTTLIKLIAGINEPTKGEV 62 Query: 65 EVLGVQMPKLSMLQQIGYMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVV 124 V MP L+ +++IGYMAQ+DALY ELSA EN +F A++YGL+ ++ RI +V ++V Sbjct: 63 LVYNTNMPNLNEMKRIGYMAQADALYEELSAYENADFMATMYGLKGKHKKERIEEVFDLV 122 Query: 125 NLQEHLRKRVDQYSGGMKRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNG 184 L +H++K+V +SGGMK+RLSLAIAL+HEP +LILDEPTVGIDP+LRK+IW++ L Sbjct: 123 QLSQHMKKQVQHFSGGMKKRLSLAIALIHEPEILILDEPTVGIDPLLRKTIWEKFYDLKK 182 Query: 185 KGTTIVLTTHVMDEAEKCDRLAMIRDGQLLAVDTPADLLKNTGAASMEEAFL 236 KGTTI++TTH+MDEAE C+RL +IR+G+L+A P +L K + +E+ FL Sbjct: 183 KGTTIIVTTHIMDEAEFCERLGLIREGKLVATGEPEELKKLVSSGRIEDVFL 234 >ref|NP_844909.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP26395.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 222 Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 124/215 (57%), Positives = 170/215 (79%) Query: 22 VLKDISLQVEQAETFGILGPSGSGKTTLVKLLTGIDEATSGQVEVLGVQMPKLSMLQQIG 81 +L ++SLQVE+AE FG++GPSGSGKTTL+KL+ GI+EAT G+V V MP L+ +++IG Sbjct: 1 MLHNLSLQVEKAEIFGLVGPSGSGKTTLIKLIAGINEATEGEVLVYNTNMPNLNEMKRIG 60 Query: 82 YMAQSDALYSELSAKENLEFFASLYGLRDGNRTRRIADVMEVVNLQEHLRKRVDQYSGGM 141 YMAQ+DALY ELSA EN +F A++YGL+ ++ RI V ++V L +H++K+V +SGGM Sbjct: 61 YMAQADALYEELSAYENADFMATMYGLKGKHKKERIEKVFDLVQLSQHMKKQVQHFSGGM 120 Query: 142 KRRLSLAIALLHEPPLLILDEPTVGIDPVLRKSIWKELRTLNGKGTTIVLTTHVMDEAEK 201 K+RLSLAIALLHEP +LILDEPTVGIDP+LRK+IW++ L KGTTI++TTH+MDEAE Sbjct: 121 KKRLSLAIALLHEPEILILDEPTVGIDPLLRKTIWEKFYDLKKKGTTIIVTTHIMDEAEF 180 Query: 202 CDRLAMIRDGQLLAVDTPADLLKNTGAASMEEAFL 236 C+RL +IR+G+L+A T +L K + +E+ FL Sbjct: 181 CERLGLIREGKLVATGTTEELKKRVSSGRIEDVFL 215 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 338,658,089 Number of extensions: 12936933 Number of successful extensions: 116806 Number of sequences better than 1.0e-05: 21391 Number of HSP's gapped: 91181 Number of HSP's successfully gapped: 23118 Length of query: 243 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 121 Effective length of database: 425,995,500 Effective search space: 51545455500 Effective search space used: 51545455500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)