BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0008.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_978852.1| ABC transporter, permease protein, putative [Ba... 243 4e-63 ref|NP_844910.1| ABC transporter, permease protein, putative [Ba... 239 6e-62 ref|NP_464450.1| putative membrane protein [Listeria monocytogen... 234 1e-60 ref|NP_832239.1| ABC transporter permease protein [Bacillus cere... 228 2e-58 ref|NP_470264.1| putative membrane protein [Listeria innocua] >g... 224 2e-57 >ref|NP_978852.1| ABC transporter, permease protein, putative [Bacillus cereus ATCC 10987] gb|AAS41460.1| ABC transporter, permease protein, putative [Bacillus cereus ATCC 10987] Length = 339 Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 132/327 (40%), Positives = 199/327 (60%), Gaps = 11/327 (3%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYESADEGKAA 60 +A+MF AP+L+L L+SLVF Y P I V V + ++ Q A++ Y S ++ + Sbjct: 21 LAMMFGAPMLLLWLLSLVFTQKDYVPHIAVVDMPVQVVKVMKNQEASIYEY-SKEKAMSE 79 Query: 61 LQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQI---QPKIS 117 L+ ++DA+I L ++LEGS+ Q + + + +P+++ Sbjct: 80 LENQKVDAVIRLENGKMNIVLEGSDSSKNRAVLQIL-------QKSTEKNDVSIMKPEVN 132 Query: 118 YLYGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFLRERTTGTLERLLSTPLKRWEIVLG 177 YL+G++D D GP++IG +++GVSF+RER +GTLERLLSTP+KRWEIV+G Sbjct: 133 YLHGSKDFTMFDGLGPVLIGFFTFFFVFILSGVSFVRERLSGTLERLLSTPIKRWEIVVG 192 Query: 178 YVCGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVXXXXXXXXXXXXXXXXXXXXYASNE 237 Y+ GFGIF Q+++I FS+ +L + +AGS YA+NE Sbjct: 193 YIIGFGIFAFIQSIIIVSFSVYILDLYVAGSIWLTLLITCMLSLTALTLGTFLSAYANNE 252 Query: 238 LQMIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLATPIYYGSEALMNIMIRGKGWSAIA 297 QMIQFIPLVIVPQIF SGLFP++++ WLQ +G P+ YG++A+ +MIR +G++ IA Sbjct: 253 FQMIQFIPLVIVPQIFFSGLFPIESMNKWLQMLGKLFPLTYGADAMRQVMIRNQGFTEIA 312 Query: 298 LDVYALIGFSLLFMLLNVLALRKHRKM 324 LD+ L+ FS+LF + NV AL+KHRK+ Sbjct: 313 LDLTVLLFFSVLFAVGNVFALKKHRKI 339 >ref|NP_844910.1| ABC transporter, permease protein, putative [Bacillus anthracis str. Ames] gb|AAP26396.1| ABC transporter, permease protein, putative [Bacillus anthracis str. Ames] Length = 339 Score = 239 bits (610), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 130/327 (39%), Positives = 197/327 (60%), Gaps = 11/327 (3%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYESADEGKAA 60 +A+MF AP+L+L L+SLVF Y P I V + ++ Q A++ Y + ++ + Sbjct: 21 LAMMFGAPMLLLWLLSLVFTQKDYVPHIAVVDMPAQLVKVMKNQEASIYEYNT-EKAMSE 79 Query: 61 LQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQI---QPKIS 117 L+ ++DA+I L ++LEGS+ Q + + I +P+++ Sbjct: 80 LENQKVDAVIRLENGKMNIVLEGSDSSKNRAVLQIL-------QKSTEKNDISIMKPEVN 132 Query: 118 YLYGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFLRERTTGTLERLLSTPLKRWEIVLG 177 YL+G++D D GP++IG +++GVSF+RER +G LERLLSTP+KRWEIV+G Sbjct: 133 YLHGSKDFTMFDGLGPVLIGFFTFFFVFILSGVSFVRERLSGALERLLSTPIKRWEIVVG 192 Query: 178 YVCGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVXXXXXXXXXXXXXXXXXXXXYASNE 237 Y+ GFGIF Q+++I FS+ +L + +AGS YA+NE Sbjct: 193 YIIGFGIFAFIQSIIIVSFSVYILDLYVAGSIWLTLLITCMLSLTALTLGTFLSAYANNE 252 Query: 238 LQMIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLATPIYYGSEALMNIMIRGKGWSAIA 297 QMIQFIPLVIVPQIF SGLFP++++ WLQ +G P+ YG++A+ +MIR +G++ IA Sbjct: 253 FQMIQFIPLVIVPQIFFSGLFPIESMNKWLQMLGKLFPLTYGADAMRQVMIRNQGFTEIA 312 Query: 298 LDVYALIGFSLLFMLLNVLALRKHRKM 324 LD+ L+ FS+LF + NV AL+KHRK+ Sbjct: 313 LDLTVLLFFSVLFAVGNVFALKKHRKI 339 >ref|NP_464450.1| putative membrane protein [Listeria monocytogenes EGD-e] pir||AE1190 probable membrane protein lmo0925 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99003.1| putative membrane protein [Listeria monocytogenes] Length = 371 Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 136/351 (38%), Positives = 197/351 (56%), Gaps = 27/351 (7%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYESADEGKAA 60 +ALMF+APLL+++L++ +F GD +P +GVSG + + L+A + T+ Y + A Sbjct: 21 LALMFLAPLLLITLLTYLFEGDTVKPVVGVSGLSDSMVKELKANDLTIKTYSENTDVTAK 80 Query: 61 LQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQ--------- 111 ++++ LDA NG EV E S P Q A + Q Sbjct: 81 IKDANLDAFFKQNGEKLEVTYENSEPSLSKEIGLKLQKALMTEQQAQAKNQAKATGEALA 140 Query: 112 ---IQPK---------------ISYLYGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFL 153 I P Y+YG +D D PI IG LIAG+SFL Sbjct: 141 KAGIDPNSIPTLTASPEKLTLSTDYVYGDKDTSFFDTISPIFIGFFVFFFVFLIAGISFL 200 Query: 154 RERTTGTLERLLSTPLKRWEIVLGYVCGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVX 213 RERTTGTLERL++TP+KR E+ LGY+ GFGIF + Q++L++ FSIQVLG+M GS YV Sbjct: 201 RERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILVAVFSIQVLGMMQNGSLFYVL 260 Query: 214 XXXXXXXXXXXXXXXXXXXYASNELQMIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLA 273 +A+NE Q++QFIP+VIVPQ+ G+FPLD + WL + Sbjct: 261 LITLTLGMVSLALGILLSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWIAHI 320 Query: 274 TPIYYGSEALMNIMIRGKGWSAIALDVYALIGFSLLFMLLNVLALRKHRKM 324 P+YYG+ AL +IM++G+G+++ A D Y L+GF L+F++LN+ AL+K+RK+ Sbjct: 321 MPLYYGANALTSIMVKGEGFASFATDFYILLGFVLVFVILNIFALKKYRKV 371 >ref|NP_832239.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] gb|AAP09440.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] Length = 337 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 198/327 (60%), Gaps = 13/327 (3%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYESADEGKAA 60 +A+MF AP+L+L L+SLVF Y P+I V + ++ Q A++ Y S ++ + Sbjct: 21 LAMMFGAPMLLLWLLSLVFTQKDYIPQIAVVDMPAQIVKVMKNQEASIYEY-SKEKAISE 79 Query: 61 LQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQI---QPKIS 117 L++ ++DA+ + +++LEGS+ Q + + + +P+++ Sbjct: 80 LEKQKVDAVFRIENGKMKLLLEGSDSSKNRAVLQVL-------QKSTEKNDVSIMKPEVN 132 Query: 118 YLYGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFLRERTTGTLERLLSTPLKRWEIVLG 177 YL+G++D D GP++IG +++GVSF+RER +GTLERLLSTP++RWEIV G Sbjct: 133 YLHGSKDFTMFDGLGPVLIGFFTFFFVFILSGVSFVRERLSGTLERLLSTPVRRWEIVAG 192 Query: 178 YVCGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVXXXXXXXXXXXXXXXXXXXXYASNE 237 Y+ GFGIF Q+++I FS+ +L + +AGS YA+NE Sbjct: 193 YIIGFGIFAFIQSIIIVSFSVYILDLYVAGSIWLTLLITCMLSLTALTLGTFLSAYANNE 252 Query: 238 LQMIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLATPIYYGSEALMNIMIRGKGWSAIA 297 QMIQFIPLVIVPQIF SGLFP++++ LQ +G P+ YG++A+ +MIR +G++ IA Sbjct: 253 FQMIQFIPLVIVPQIFFSGLFPMESMN--LQMLGKVFPLTYGADAMRQVMIRNQGFTEIA 310 Query: 298 LDVYALIGFSLLFMLLNVLALRKHRKM 324 LD+ L+ F++LF + NV AL+KHRK+ Sbjct: 311 LDLTVLLLFAILFAVGNVFALKKHRKI 337 >ref|NP_470264.1| putative membrane protein [Listeria innocua] pir||AE1548 probable membrane protein lin0925 [imported] - Listeria innocua (strain Clip11262) emb|CAC96157.1| putative membrane protein [Listeria innocua] Length = 371 Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/351 (37%), Positives = 195/351 (55%), Gaps = 27/351 (7%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYESADEGKAA 60 +ALMF+APLL+++L++ +F GD +P +GV+G + + L+ + T+ Y A Sbjct: 21 LALMFLAPLLLITLLTYLFEGDTVKPVVGVNGLSSSMVKELKENDLTIKTYPDNTNATAK 80 Query: 61 LQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQ--------- 111 +++++LDA +G +V E S P Q + Q Sbjct: 81 IKDADLDAFFQQDGEKIKVTYENSEPSLSKEIGLKLQKALMAEQQVQVKKQAKTTGEALA 140 Query: 112 ---IQPK---------------ISYLYGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFL 153 I P Y+YG +D D PI IG LIAG+SFL Sbjct: 141 KAGIDPNSLPALTNSPEKLTISTDYVYGDKDTSFFDTISPIFIGFFVFFFVFLIAGISFL 200 Query: 154 RERTTGTLERLLSTPLKRWEIVLGYVCGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVX 213 RERTTGTLERL++TP+KR E+ LGY+ GFGIF + Q++L++ FSIQVLG+M GS YV Sbjct: 201 RERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILVAVFSIQVLGMMQNGSLFYVL 260 Query: 214 XXXXXXXXXXXXXXXXXXXYASNELQMIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLA 273 +A+NE Q++QFIP+VIVPQ+ G+FPLD + WL + Sbjct: 261 LITLTLGMVSLALGILLSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWIAHI 320 Query: 274 TPIYYGSEALMNIMIRGKGWSAIALDVYALIGFSLLFMLLNVLALRKHRKM 324 P+YYG+ AL +IM++G+G+++ A D Y L+GF ++F++LN+ AL+K+RK+ Sbjct: 321 MPLYYGANALTSIMVKGEGFASFANDFYILLGFVIIFVVLNIFALKKYRKV 371 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 388,389,633 Number of extensions: 13301761 Number of successful extensions: 38681 Number of sequences better than 1.0e-05: 85 Number of HSP's gapped: 38663 Number of HSP's successfully gapped: 87 Length of query: 324 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 198 Effective length of database: 415,135,104 Effective search space: 82196750592 Effective search space used: 82196750592 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)