BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0199.0006.p
         (1336 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||I39917 hypothetical protein - Bacillus sp >gi|460687|dbj|BA...   157   1e-36
gb|AAG44799.1| amylopullulanase [Geobacillus stearothermophilus]      154   2e-35
ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella th...   147   3e-33
gb|AAO88279.1| endo-beta-N-acetylglucosaminidase [Bacillus circu...   132   7e-29
ref|ZP_00181177.1| hypothetical protein Mther075501 [Moorella th...   125   7e-27

>pir||I39917 hypothetical protein - Bacillus sp
 dbj|BAA05832.1| ORF [Bacillus sp.]
          Length = 2032

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 162/340 (47%), Gaps = 17/340 (5%)

Query: 1000 AAISVHTPKAAYTIPLQLIRWDTAAGQPGTNASAADVRIQIEIAAPDXXXXXXXXXXXXX 1059
            A I   T +A Y +P + ++   AA      A+   V I IE+   D             
Sbjct: 1707 ATIVSATEQATYKLPAKEVQASLAAIAKTLGATVEQVNISIEMRVKDAPQLRAKA----- 1761

Query: 1060 XXXXFLAGPLDFSVKIVSGSQTSGLAGFSAYVQRSFSLPAGTDTSRATGIVMEPDGTVRH 1119
                 L+  ++F V   +  +   +  F+ YV+R   L    + SR+  + +  DG++  
Sbjct: 1762 -----LSDAVEFHVVAKANGKEQVIDRFTQYVEREIVLKQAVNASRSIVVRVNDDGSITP 1816

Query: 1120 VPTRFVLQNGEYAAVISSLTNSTYAIVSHPVEFKDMAGHWAQAAVDDLGTRLVVNGSGNG 1179
            VPT FV       AVI SLTNSTY +V     F D+  HWA+  ++ L  + +V G    
Sbjct: 1817 VPTTFVGNK----AVIKSLTNSTYVVVEGTHTFSDIEKHWAKGYIETLAAKQLVKGMTET 1872

Query: 1180 LFLPDRGITRAEFAAVLVRGLGLQATGGTSPFTDVSSSDWYSSAVQTASRHQL--ITGFE 1237
             + P+  +TRA+FA +LVR L L        F DV  ++W++   + A+  +L  I G  
Sbjct: 1873 AYRPNEQMTRAQFAVLLVRALALPHETYDGRFADVKGTEWFNKNGELAAAVKLGIIQGKT 1932

Query: 1238 DGSFRPDDAITREQAVTMLAQAMQLTGLA-SEVSSPPADLMKKFTDADQASAWALDSIAA 1296
              +F P++ ITR QA  M+ +A++L+ +   E ++        F DA Q   WA  +I A
Sbjct: 1933 ANTFAPNEPITRVQAAVMIERALKLSFVGYDEATNDKTKKATDFRDAKQLPTWAKQAIEA 1992

Query: 1297 SLQAGLITGRSGTGLAPQSHVTRAEVAVLLQRLLQKSGLI 1336
              QAG++ GR      P  H+TRAE+A +L   L K  L+
Sbjct: 1993 VYQAGIMQGRDNGSFDPTGHMTRAEMAKVLAEFLGKVKLM 2032


>gb|AAG44799.1| amylopullulanase [Geobacillus stearothermophilus]
          Length = 2018

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 170/345 (49%), Gaps = 27/345 (7%)

Query: 1000 AAISVHTPKAAYTIPLQLIRW--DTAAGQPGTNASAADVRIQIEIA-APDXXXXXXXXXX 1056
            A I   + +A Y +P + ++   D  A Q GT      + I++++  AP           
Sbjct: 1693 ATIVSASEQAVYKLPAKEVKQAVDQVAKQLGTTVDQVSISIEMKVKDAPQLPVKT----- 1747

Query: 1057 XXXXXXXFLAGPLDFSVKIVSGSQTSGLAGFSAYVQRSFSLPAGTDTSRATGIVMEPDGT 1116
                    L+  + F V   +  +   +  F+ YV+R  +L      +RA  + +  DG+
Sbjct: 1748 --------LSDAVQFHVVAKANGKEQAIDRFTQYVEREIALKQPVQPNRAVVVRVNDDGS 1799

Query: 1117 VRHVPTRFVLQNGEYAAVISSLTNSTYAIVSHPVEFKDMAGHWAQAAVDDLGTRLVVNGS 1176
            +  VPT FV Q     AV  SLTNSTY +V     F D+  HWA+  +D L  + +V G 
Sbjct: 1800 LTPVPTTFVDQK----AVAKSLTNSTYVVVEGTTTFADIVQHWAKPYIDSLAAKQLVRGV 1855

Query: 1177 GNGLFLPDRGITRAEFAAVLVRGLGLQATGGTSPFTDVSSSDWYSSAVQTAS--RHQLIT 1234
                + P+  +TRA+FA +LVR L L +      F DV  ++W++   + A+  ++ +I 
Sbjct: 1856 TETAYRPNEPMTRAQFAVLLVRALALPSETYDGRFADVKGTEWFNQHGELAAAVKYGVIQ 1915

Query: 1235 GFEDGSFRPDDAITREQAVTMLAQAMQLTGLASEVSSPPADLMKK---FTDADQASAWAL 1291
            G    +F P++ ITR QA  M+ +A+ L+ +  + ++   D  KK   F DA+Q  AW+ 
Sbjct: 1916 GKTPSTFAPNEPITRAQAAVMIERALNLSFVNFDKAA--KDQTKKLADFRDANQLPAWSK 1973

Query: 1292 DSIAASLQAGLITGRSGTGLAPQSHVTRAEVAVLLQRLLQKSGLI 1336
             +I A  QAG++ G      AP   +TRAE+A +L   L K+ L+
Sbjct: 1974 QAIEAIYQAGIVQGHPDGTFAPAGRMTRAEMAKVLAEFLAKAKLM 2018


>ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella thermoacetica ATCC 39073]
          Length = 308

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 121/201 (60%), Gaps = 3/201 (1%)

Query: 1135 ISSLTNS--TYAIVSHPVEFKDMAGHWAQAAVDDLGTRLVVNGSGNGLFLPDRGITRAEF 1192
            IS++ NS   Y ++++   F D+ GHWAQ  ++ +  R V  G     F P+  +TRAEF
Sbjct: 107  ISAVLNSFSKYTVLAYDKTFSDIQGHWAQRDIEIMAARHVAAGISASEFKPEGQVTRAEF 166

Query: 1193 AAVLVRGLGL-QATGGTSPFTDVSSSDWYSSAVQTASRHQLITGFEDGSFRPDDAITREQ 1251
             A L+R LG+ +     + F D+   DWY  AV TASR  L+ G+EDGSFRPD AI+R++
Sbjct: 167  TAFLLRTLGISEDRSAANRFADIQPGDWYYGAVVTASRTGLVAGYEDGSFRPDKAISRQE 226

Query: 1252 AVTMLAQAMQLTGLASEVSSPPADLMKKFTDADQASAWALDSIAASLQAGLITGRSGTGL 1311
               MLA+A+   G   +V+    D++ KF+D    ++WA +S A ++++GLI GR+ T  
Sbjct: 227  MAAMLARALAYAGQKVDVAGRVDDILSKFSDNGSLASWARESAAVAVESGLIVGRTATTF 286

Query: 1312 APQSHVTRAEVAVLLQRLLQK 1332
             P  + TRAE  V+L+RL  +
Sbjct: 287  VPLGNATRAETVVMLKRLQDR 307


>gb|AAO88279.1| endo-beta-N-acetylglucosaminidase [Bacillus circulans]
          Length = 1936

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 11/250 (4%)

Query: 1084 LAGFSAYVQRSFSLPAGTDTSRATGIVMEPDGTVRHVPTRFVLQNGEYAAVISSLTNSTY 1143
            L+ F   +  S  + +G +  +     +  +G + ++   +  ++GE AA ++    S Y
Sbjct: 1696 LSEFDQPITISLKIESGVNPEQVGIYYISGNGKLDYIGGEY--RDGELAAEVTHF--SQY 1751

Query: 1144 AIVSHPVEFKDM-AGHWAQAAVDDLGTRLVVNGSGNGLFLPDRGITRAEFAAVLVRGLGL 1202
            A++     F D+ AGHWA+  +  L +RL+V+G+    F P+R +TRAEF A+L R L L
Sbjct: 1752 AVLKVVKVFDDVPAGHWAEGVISKLTSRLMVDGTSETTFEPERVVTRAEFTALLARALKL 1811

Query: 1203 QATGGTSPFTDVSSSDWYSSAVQTASRHQLITGFEDGSFRPDDAITREQAVTMLAQAMQL 1262
             A GGT  F DV + DWY+ AV  A    +  G   G F P   ITRE+ V M  +A   
Sbjct: 1812 TA-GGTPTFADVKAGDWYADAVTAAVEAGIAEGKSAGQFEPQARITREEMVVMTMRAYN- 1869

Query: 1263 TGLASEVSSPPADLMKKFTDADQASAWALDSIAASLQAGLITGRSGTGLAPQSHVTRAE- 1321
                ++   P   +   FTD +Q SAWA++ + A+    LI GR+     PQ   TRAE 
Sbjct: 1870 ---KAKDKGPSTGVEASFTDENQISAWAVEQVKAAAALQLIQGRAQGKFEPQGTATRAEA 1926

Query: 1322 VAVLLQRLLQ 1331
            V V+   LL+
Sbjct: 1927 VQVIFNMLLK 1936



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 1211 FTDVSSSDWYSSAVQTASRHQLITGFEDGSFRPDDAITREQAVTMLAQAMQLTGLASEVS 1270
            F DV +  W    +   +   ++ G  + +F P+  +TR +   +LA+A++LT   +   
Sbjct: 1760 FDDVPAGHWAEGVISKLTSRLMVDGTSETTFEPERVVTRAEFTALLARALKLTAGGTPT- 1818

Query: 1271 SPPADLMKKFTDADQASAWALDSIAASLQAGLITGRSGTGLAPQSHVTRAEVAVLLQRLL 1330
                     F D  +A  W  D++ A+++AG+  G+S     PQ+ +TR E+ V+  R  
Sbjct: 1819 ---------FADV-KAGDWYADAVTAAVEAGIAEGKSAGQFEPQARITREEMVVMTMRAY 1868

Query: 1331 QKS 1333
             K+
Sbjct: 1869 NKA 1871


>ref|ZP_00181177.1| hypothetical protein Mther075501 [Moorella thermoacetica ATCC 39073]
          Length = 368

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 10/173 (5%)

Query: 1159 WAQAAVDDLGTRLVVNGSGNGLFLPDRGITRAEFAAVLVRGLGLQATGG-TSPFTDVSSS 1217
            WAQ  ++ L    +V G     F P R +TRAEFA++LV+ LGL+   G  +PF DV   
Sbjct: 202  WAQDTIETLAGAGIVAGVDGSHFEPGRAVTRAEFASLLVKALGLEGKAGEKNPFKDVKGD 261

Query: 1218 DWYSSAVQTASRHQLITGFEDGSFRPDDAITREQAVTMLAQAMQLTGLASEVSSPPADLM 1277
             WY+ AV  A+ + L+ G+EDG+FRPD+ ITRE+   ML +A+ L         P  +  
Sbjct: 262  AWYAGAVTAAASNGLVKGYEDGTFRPDNVITREELAAMLVRAVNL---------PAGEEK 312

Query: 1278 KKFTDADQASAWALDSIAASLQAGLITGRSGTGLAPQSHVTRAEVAVLLQRLL 1330
              F D D+ S WA  S+A +   GL+ G       P    +RAE AV++ R+L
Sbjct: 313  LAFKDNDKVSTWARKSVAVAAAHGLVKGFEDGTFRPGDAASRAECAVMVYRVL 365


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.312    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 1,738,368,942
Number of extensions: 68475172
Number of successful extensions: 162329
Number of sequences better than 1.0e-05: 307
Number of HSP's gapped: 161513
Number of HSP's successfully gapped: 490
Length of query: 1336
Length of database: 757,237,578
Length adjustment: 138
Effective length of query: 1198
Effective length of database: 382,553,916
Effective search space: 458299591368
Effective search space used: 458299591368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)