BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0005.p (1113 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_844228.1| helicase, putative [Bacillus anthracis str. Ame... 1100 0.0 ref|NP_831519.1| SWF/SNF family helicase [Bacillus cereus ATCC 1... 1096 0.0 ref|NP_978193.1| helicase, putative [Bacillus cereus ATCC 10987]... 1088 0.0 emb|CAA67095.1| SNF [Bacillus cereus] 1083 0.0 ref|NP_693997.1| helicase [Oceanobacillus iheyensis HTE831] >gi|... 756 0.0 >ref|NP_844228.1| helicase, putative [Bacillus anthracis str. Ames] gb|AAP25714.1| helicase, putative [Bacillus anthracis str. Ames] Length = 1064 Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/1110 (50%), Positives = 749/1110 (67%), Gaps = 55/1110 (4%) Query: 5 VIRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVYGREPYDITLTIDSDGD 64 +I+ +CG+ +++RG Y++ KV + N+ +ATV G E + +T+ GD Sbjct: 9 IIKEVCGETSYKRGEAYYKSNKV----IVNHYDETKEICEATVKGNEDFHVTVEKAKKGD 64 Query: 65 VNGKCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFTGKTGVLF 124 V +CSCP+ + +C+H+AAVL+ I Y + G G+ + RN Sbjct: 65 VVARCSCPSLASFQTYCQHVAAVLIQINYNQQTGG----MGSVSSRN------------- 107 Query: 125 PRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEVICRPFSY 184 D+ T+G M LF + RP D R L V IC P + Sbjct: 108 -----DQLTNG-------------MFQLFADKPLRPKSKQHRFDTREILDVAFICSPVAT 149 Query: 185 NFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNAVL 244 G LLGI+LK+ + Y++ IR FL +V + E F +S F Y P +HSF +E + ++ Sbjct: 150 KSGGALLGIQLKLA--KTYLINHIREFLSKVEKRETFHYSNEFTYTPDIHSFKQETDVII 207 Query: 245 LKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQIGDT 304 LI+I NE++Y D + ++ E ++ IPP W +L AL+ + V L+ + Sbjct: 208 QHLIKIYHNEKMYEDALEVHAKQD-----ESMIFIPPASWNDMLSALSRAEYVQLKQNEQ 262 Query: 305 LTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPVQECR 364 L G+QI+ LLPL F+F + ++ G+ L I GL ++ VME Y L +G+L LP+++C Sbjct: 263 LFHGLQISKGLLPLHFEFTKGNNGGFTLHIAGLNRVRVMEMYNNALYDGKLYHLPMEDCM 322 Query: 365 RLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQTQLQAXX 424 RL EL+KM+ +S ++ I +ME F+ KV+PGL KLG V I + I+DR+ L+A Sbjct: 323 RLIELQKMMIRSNSNQFYIPENKMEHFVAKVVPGLMKLGTVRIDEGISDRVETPSLKAKL 382 Query: 425 XXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHESFART 484 AGLEF YG +VINPL+E G + RD + E+ IL++M+ +FA+T Sbjct: 383 YLDRVKNRLLAGLEFHYGNVVINPLEED----GQPSVFNRDEKKEKEILDIMSESAFAKT 438 Query: 485 ESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTWNEKTDWLD 544 E GY M +E+ EY+FLYH +P L+ L+ +YATTA+K R+ G P + E+ DWL Sbjct: 439 EGGYFMHNEDAEYNFLYHIVPTLKGLVDIYATTAIKLRIHKGDTAPLIRVRRKERIDWLS 498 Query: 545 FKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHAADIK 604 F+F + GIPE+EI VL +L+EKRKYYRL +G+LL LE+ E EI + E G+ + Sbjct: 499 FRFDIKGIPEAEIKGVLVALEEKRKYYRLANGSLLSLESKEFNEINQFVKESGIRKEFLH 558 Query: 605 SPEFSLPLVRGLH-MNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPVLRD 663 E ++PL+R + MN G + +S+ S + L+ ++ +P+ L F VP+TL V+R+ Sbjct: 559 GEEVNVPLIRSVKWMN---GLHEGNVLSLDESVQDLVESIQNPKKLKFTVPQTLRAVMRE 615 Query: 664 YQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPASLL 723 YQ YGF+WMKTLA+YRFGGILADDMGLGKTLQSIA++ S L +IR+ P L+V+P+SL+ Sbjct: 616 YQVYGFEWMKTLAYYRFGGILADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSPSSLV 675 Query: 724 YNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRSFHT 783 YNW +ELK+FAP I A I DGN A R K +++ A DV+ITSYPLLRRD+ Y R FHT Sbjct: 676 YNWLSELKKFAPHIRAVIADGNQAERRKILKDVAEFDVVITSYPLLRRDIRSYA-RPFHT 734 Query: 784 LILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLFPGKKA 843 L LDEAQ KN TQTA+AVK +QA YRF LTGTPVEN+LE+LWSI+ VVFP L PG+K Sbjct: 735 LFLDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKE 794 Query: 844 FHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLRKEA 903 F DL RE +AKR++PF+LRRLK DVLKELPDKIE LQ+SELLP+QK+LY AYLA+LR+E Sbjct: 795 FGDLRREDIAKRVKPFVLRRLKEDVLKELPDKIEHLQSSELLPDQKRLYAAYLAKLREET 854 Query: 904 LKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIGECRSSGKR 963 LKHLD D K +I++LAGLTRLRQ+CCHPALFVD Y G S KFEQLL+I+ ECRS+GKR Sbjct: 855 LKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYKGSSAKFEQLLDILEECRSTGKR 914 Query: 964 VLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLFLISLKAGG 1023 +LIFSQFT+ML +I REL A+P+FYLDG+TPS +RVELC RFNEGE DLFLISLKAGG Sbjct: 915 ILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDLFLISLKAGG 974 Query: 1024 TGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYELQQK 1083 TGLNLTGADTVILYDLWWNPAVEQQAADRA+R+GQK VQVI+L+A GT+E+KM+ELQ+ Sbjct: 975 TGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTIEEKMHELQES 1034 Query: 1084 KKNLIDEVIEPGQEALSALSEQDIREILMI 1113 KKNLI EVIEPG+E LS+++E++IR+ILMI Sbjct: 1035 KKNLIAEVIEPGEEKLSSITEEEIRDILMI 1064 >ref|NP_831519.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579] gb|AAP08720.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579] Length = 1064 Score = 1096 bits (2835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/1111 (50%), Positives = 746/1111 (67%), Gaps = 57/1111 (5%) Query: 5 VIRLLCGKAAFERGSEDYEAGKVRLAAV-ENYEGLEYSKYQATVYGREPYDITLTIDSDG 63 +I+ +CG+ +++RG Y++ KV + EN E E ATV G E + +T+ G Sbjct: 9 IIKEVCGETSYKRGEAYYKSNKVIIDHYDENKEICE-----ATVKGNEDFHVTVAKAKKG 63 Query: 64 DVNGKCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFTGKTGVL 123 DV KCSCP+ + +C+H+AAVL+ I Y + + +T+ RN Sbjct: 64 DVVAKCSCPSLASFQTYCQHVAAVLIQINYNQQ----IGGMSSTSSRN------------ 107 Query: 124 FPRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEVICRPFS 183 D+ TSG M LF + RP D R L +E IC P + Sbjct: 108 ------DQLTSG-------------MFQLFADKPLRPKSKQHRFDTREILDIEFICTPVA 148 Query: 184 YNFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNAV 243 G LLGI+LK+ ++Y + IR FL +V + E F S F Y P +HSF +E +A+ Sbjct: 149 TRSGGALLGIQLKLA--KVYFINHIREFLSKVEKRESFHCSNEFTYTPDVHSFKQETDAI 206 Query: 244 LLKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQIGD 303 + +LI++ NE++Y D + ++ E ++ IPP W+ +L +L+ + V L+ + Sbjct: 207 IQQLIKMYHNEKMYEDTLEVHAKQD-----ESMIFIPPASWKDMLFSLSKAEYVQLKQNE 261 Query: 304 TLTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPVQEC 363 L G+Q++ LLPL F+F + ++ G+ L I+GL ++ VM+ Y L +G+L L +++C Sbjct: 262 QLFQGLQVSKGLLPLHFEFTKGNNGGFTLHIEGLNRVQVMDMYNNALYDGKLYHLHIEDC 321 Query: 364 RRLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQTQLQAX 423 RL EL+KM+++S ++ I +ME F+ KV+PGL KLG VHI + I+DR+ L+A Sbjct: 322 MRLIELQKMMSRSNSNQFYIPESKMEHFVAKVVPGLMKLGTVHIDEVISDRVETPSLKAK 381 Query: 424 XXXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHESFAR 483 AGLEF YG ++INPL+E G + RD + E+ IL++M+ +FA+ Sbjct: 382 LYLDRVKNRLLAGLEFHYGNVMINPLEED----GQPSVFNRDEKKEKEILDIMSESAFAK 437 Query: 484 TESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTWNEKTDWL 543 TE GY M +EE EY+FLYH +P L+ L+ +YATTA+K R+ G P + E+ DWL Sbjct: 438 TEGGYFMHNEEAEYNFLYHVVPTLKGLVDIYATTAIKLRISKGDAVPLIRVRRKERIDWL 497 Query: 544 DFKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHAADI 603 F+F + GIPE+EI VL +L+EKRKYYRL +G+ L LE+ E EI + E G+ + Sbjct: 498 SFRFDIKGIPEAEIKGVLAALEEKRKYYRLANGSFLSLESKEFNEINQFIKESGIRKEFL 557 Query: 604 KSPEFSLPLVRGLH-MNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPVLR 662 E ++PL+R + MN G + +S+ S + L+ N+ +P+ L F VP TL +R Sbjct: 558 HGEEVNVPLIRSVKWMN---GLHEGNVLSLDDSVQELVENIQNPKKLKFAVPNTLNAEMR 614 Query: 663 DYQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPASL 722 YQ YGF+WMKTLAHYRFGGILADDMGLGKTLQSIAF+ S L ++R+ P L+V+P+SL Sbjct: 615 KYQVYGFEWMKTLAHYRFGGILADDMGLGKTLQSIAFIDSVLTEVREKKLPILVVSPSSL 674 Query: 723 LYNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRSFH 782 +YNW +ELK+FAP I A I DG A R K +++ DV+ITSYPLLRRD+ LY R FH Sbjct: 675 VYNWFSELKKFAPHIRAVIADGIQAERRKILKDITEFDVVITSYPLLRRDIRLYA-RPFH 733 Query: 783 TLILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLFPGKK 842 TL LDEAQ KN TQTA+AVK +QA YRF LTGTPVEN+LE+LWSI+ VVFP L PG+K Sbjct: 734 TLFLDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRK 793 Query: 843 AFHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLRKE 902 F DL RE +AKR++PF+LRRLK DVL ELP+KIE LQ+SELLP+QK LY AYLA+LR+E Sbjct: 794 EFGDLRREDIAKRVKPFVLRRLKGDVLNELPEKIEHLQSSELLPDQKSLYAAYLAKLREE 853 Query: 903 ALKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIGECRSSGK 962 LKHLD D K +I++LAGLTRLRQ+CCHPALFVD Y G S KFEQLLEI+ ECRS+GK Sbjct: 854 TLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYKGSSAKFEQLLEILEECRSTGK 913 Query: 963 RVLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLFLISLKAG 1022 R+LIFSQFT+ML +I REL A+P+FYLDG TP+ RVELC RFNEGE DLFLISLKAG Sbjct: 914 RILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGDLFLISLKAG 973 Query: 1023 GTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYELQQ 1082 GTGLNLTGADTVILYDLWWNPAVEQQAADRA+R+GQK VQVI+L+A GT+E+KM+ELQ+ Sbjct: 974 GTGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTIEEKMHELQE 1033 Query: 1083 KKKNLIDEVIEPGQEALSALSEQDIREILMI 1113 KKNLI EVIEPG+E LS+++E++IR+ILMI Sbjct: 1034 SKKNLIAEVIEPGEEKLSSITEEEIRDILMI 1064 >ref|NP_978193.1| helicase, putative [Bacillus cereus ATCC 10987] gb|AAS40801.1| helicase, putative [Bacillus cereus ATCC 10987] Length = 1064 Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/1110 (50%), Positives = 744/1110 (67%), Gaps = 55/1110 (4%) Query: 5 VIRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVYGREPYDITLTIDSDGD 64 +I+ +CG+ +++RG Y++ KV + NY +ATV G E + +T+ GD Sbjct: 9 IIKEVCGETSYKRGEAYYKSNKV----IVNYYDETKEICEATVKGNEDFRVTVEKAKKGD 64 Query: 65 VNGKCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFTGKTGVLF 124 V +CSCP+ + +C+H+AAVL+ I Y + G G+ + RN Sbjct: 65 VVARCSCPSLASFQTYCQHVAAVLIQINYNQQTGG----MGSVSSRN------------- 107 Query: 125 PRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEVICRPFSY 184 D+ T+G M LF + RP D R L V IC P + Sbjct: 108 -----DQLTNG-------------MFQLFADKPLRPKSKQHRFDTREILDVAFICSPVAK 149 Query: 185 NFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNAVL 244 G LLGI+LK+ + Y + IR FL +V + E F S F Y P +HSF +E +A++ Sbjct: 150 KSGGALLGIQLKLA--KTYFINHIREFLSKVEKREAFHCSNEFTYTPDVHSFKQETDAII 207 Query: 245 LKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQIGDT 304 + I+I NE++Y D + ++ E ++ IPP W +L AL+ + V L+ + Sbjct: 208 QQFIKIYHNEKMYEDALEVHAKQD-----ESMIFIPPASWNDMLSALSRAEYVQLKQNEQ 262 Query: 305 LTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPVQECR 364 L G+ I+ LLPL F+F + ++ G+ L I GL ++ VME Y L +G+L LP+++C Sbjct: 263 LFQGLHISKGLLPLHFEFTKGNNGGFTLHIDGLNRVRVMEMYNNALYDGKLYHLPMEDCM 322 Query: 365 RLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQTQLQAXX 424 RL EL+KM+++S ++ I +ME F+ KV+PGL KLG V I + I+DR+ L+A Sbjct: 323 RLIELQKMMSRSNSNQFYIPENKMEHFVAKVVPGLMKLGTVRIDEVISDRVETPSLKAKL 382 Query: 425 XXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHESFART 484 AGLEF YG +VINPL+E G + RD + E+ IL++M+ +FA+T Sbjct: 383 YLDRVKNRLLAGLEFHYGNVVINPLEED----GQPSVFNRDEKKEKEILDIMSESAFAKT 438 Query: 485 ESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTWNEKTDWLD 544 E GY M +EE EY+FLYH +P L+ L+ +YATTA+K R+ G P + E+ DWL Sbjct: 439 EGGYFMHNEEAEYNFLYHIVPTLKGLVDIYATTAIKLRIHKGDTAPLIRVRRKERIDWLS 498 Query: 545 FKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHAADIK 604 F+F + GIPE+EI VL +L+EKRKYYRL +G+LL LE+ E EI + E G+ + Sbjct: 499 FRFDIKGIPEAEIKGVLAALEEKRKYYRLANGSLLSLESKEFNEINQFVKESGIRKEFLH 558 Query: 605 SPEFSLPLVRGLH-MNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPVLRD 663 E ++PL+R + MN G + +S+ S + L+ ++ +P+ L F VP TL V+R+ Sbjct: 559 GEEVNVPLIRSVKWMN---GLHEGNVLSLDESVQDLVESIQNPKKLKFTVPPTLHAVMRE 615 Query: 664 YQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPASLL 723 YQ YGF+WMKTLA+YRFGGILADDMGLGKTLQSIA++ S L +IR+ P L+V+P+SL+ Sbjct: 616 YQVYGFEWMKTLAYYRFGGILADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSPSSLV 675 Query: 724 YNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRSFHT 783 YNW +ELK+FAP I A I DGN R K +++ A DV+ITSYPLLRRDV Y R FHT Sbjct: 676 YNWFSELKKFAPHIRAVIADGNQTERRKILKDVAEFDVVITSYPLLRRDVRSYA-RPFHT 734 Query: 784 LILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLFPGKKA 843 L LDEAQ KN TQTA+AVK +QA YRF LTGTPVEN+LE+LWSI+ VVFP L PG+K Sbjct: 735 LFLDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKE 794 Query: 844 FHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLRKEA 903 F DL RE +AKR++PF+LRRLK DVL+ELPDKIE LQ+SELLP+QK+LY AYLA+LR+E Sbjct: 795 FGDLRREDIAKRVKPFVLRRLKEDVLQELPDKIEHLQSSELLPDQKRLYAAYLAKLREET 854 Query: 904 LKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIGECRSSGKR 963 LKHLD D K +I++LAGLTRLRQ+C HPALFVD Y G S K EQLL+I+ ECRS+GKR Sbjct: 855 LKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYKGSSAKLEQLLDILEECRSTGKR 914 Query: 964 VLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLFLISLKAGG 1023 +LIFSQFT+ML +I REL A+P+FYLDG+TPS +RVELC RFNEGE DLFLISLKAGG Sbjct: 915 ILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDLFLISLKAGG 974 Query: 1024 TGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYELQQK 1083 TGLNLTGADTVILYDLWWNPAVEQQAADRA+R+GQK VQVI+L+A GT+E+KM+ELQ+ Sbjct: 975 TGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTIEEKMHELQES 1034 Query: 1084 KKNLIDEVIEPGQEALSALSEQDIREILMI 1113 KK+LI EVIEPG+E LS+++E++IR+ILMI Sbjct: 1035 KKHLIAEVIEPGEEKLSSITEEEIRDILMI 1064 >emb|CAA67095.1| SNF [Bacillus cereus] Length = 1064 Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/1110 (49%), Positives = 742/1110 (66%), Gaps = 55/1110 (4%) Query: 5 VIRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVYGREPYDITLTIDSDGD 64 +I+ +CG+ +++RG Y++ KV + NY +ATV G E + +T+ GD Sbjct: 9 IIKEVCGETSYKRGEAYYKSNKV----IVNYYDETKEICEATVKGNEDFRVTVEKAKKGD 64 Query: 65 VNGKCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFTGKTGVLF 124 V +CSCP+ + +C+H+AAVL+ I Y + G G+ + RN Sbjct: 65 VVARCSCPSLASFQTYCQHVAAVLIQINYNQQTGG----MGSVSSRN------------- 107 Query: 125 PRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEVICRPFSY 184 D+ T+G M LF + RP D R L V IC P + Sbjct: 108 -----DQLTNG-------------MFQLFADKPLRPKSKQHRFDTREILDVAFICSPVAK 149 Query: 185 NFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNAVL 244 G LLGI+LK+ + Y + IR FL +V + E F S F Y P +HSF +E +A++ Sbjct: 150 KSGGALLGIQLKLA--KTYFINHIREFLSKVEKREAFHCSNEFTYTPDVHSFKQETDAII 207 Query: 245 LKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQIGDT 304 + I+I NE++Y D + ++ E ++ IPP W +L AL+ + V L+ + Sbjct: 208 QQFIKIYHNEKMYEDALEVHAKQD-----ESMIFIPPASWNDMLSALSRAEYVQLKQNEQ 262 Query: 305 LTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPVQECR 364 L G+ I+ LLPL F+F + ++ G+ L I GL ++ VME Y L +G+L LP+++C Sbjct: 263 LFQGLHISKGLLPLHFEFTKGNNGGFTLHIDGLNRVRVMEMYNNALYDGKLYHLPMEDCM 322 Query: 365 RLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQTQLQAXX 424 RL EL+KM+++S ++ I +ME F+ KV+PGL KLG V I + I+DR+ L+A Sbjct: 323 RLIELQKMMSRSNSNQFYIPENKMEHFVAKVVPGLMKLGTVRIDEVISDRVETPSLKAKL 382 Query: 425 XXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHESFART 484 AGLEF YG +VINPL+E G + RD + E+ IL++M+ +FA+T Sbjct: 383 YLDRVKNRLLAGLEFHYGNVVINPLEED----GQPSVFNRDEKKEKEILDIMSESAFAKT 438 Query: 485 ESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTWNEKTDWLD 544 E GY M +EE EY+FLYH +P L+ L+ +YATTA+K R+ G P + E+ DWL Sbjct: 439 EGGYFMHNEEAEYNFLYHIVPTLKGLVDIYATTAIKLRIHKGDTAPLIRVRRKERIDWLS 498 Query: 545 FKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHAADIK 604 F+F + GIPE+EI VL +L+EKRKYYRL +G+LL LE+ E EI + E G+ + Sbjct: 499 FRFDIKGIPEAEIKGVLAALEEKRKYYRLANGSLLSLESKEFNEINQFVKESGIRKEFLH 558 Query: 605 SPEFSLPLVRGLH-MNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPVLRD 663 E ++PL+R + MN G + +S+ S + L+ ++ +P+ L F VP TL V+R+ Sbjct: 559 GEEVNVPLIRSVKWMN---GLHEGNVLSLDESVQDLVESIQNPKKLKFTVPPTLHAVMRE 615 Query: 664 YQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPASLL 723 YQ YGF+WMKTLA+YRFGGILADDMGLGKTLQSIA++ S L +IR+ P L+V+P+SL+ Sbjct: 616 YQVYGFEWMKTLAYYRFGGILADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSPSSLV 675 Query: 724 YNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRSFHT 783 YNW +ELK+FAP I A I DGN R K +++ A DV+ITSYPLLRRDV Y R FHT Sbjct: 676 YNWFSELKKFAPHIRAVIADGNQTERRKILKDVAEFDVVITSYPLLRRDVRSYA-RPFHT 734 Query: 784 LILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLFPGKKA 843 L LDEAQ KN TQTA+AVK +QA YRF LTGTPVEN+LE+LWSI+ VVFP L PG+K Sbjct: 735 LFLDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKE 794 Query: 844 FHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLRKEA 903 F DL RE +A ++PF+LRRLK DVL+ELPDKIE LQ+SELLP+QK+LY AYLA+LR+E Sbjct: 795 FGDLRREDIANAVKPFVLRRLKEDVLQELPDKIEHLQSSELLPDQKRLYAAYLAKLREET 854 Query: 904 LKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIGECRSSGKR 963 LKHLD D K +I++LAGLTRLRQ+C HPALFVD Y G S K EQLL+I+ ECRS+GKR Sbjct: 855 LKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYKGSSAKLEQLLDILEECRSTGKR 914 Query: 964 VLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLFLISLKAGG 1023 +LIFSQFT+ML +I REL A+P+FYLDG+TPS +RVELC RFNEGE DLFLISLKAGG Sbjct: 915 ILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDLFLISLKAGG 974 Query: 1024 TGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYELQQK 1083 TGLNLTGADTVILYDLWWNPAVEQQAADRA+R+GQK VQVI+L+A GT+E+KM+ELQ+ Sbjct: 975 TGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTIEEKMHELQES 1034 Query: 1084 KKNLIDEVIEPGQEALSALSEQDIREILMI 1113 KK+LI EVIEPG+E LS+++E++IR+ILMI Sbjct: 1035 KKHLIAEVIEPGEEKLSSITEEEIRDILMI 1064 >ref|NP_693997.1| helicase [Oceanobacillus iheyensis HTE831] dbj|BAC15031.1| helicase (swi/snf family) [Oceanobacillus iheyensis HTE831] Length = 1056 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1118 (37%), Positives = 651/1118 (58%), Gaps = 84/1118 (7%) Query: 6 IRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVYGREPY--DITLTIDSDG 63 I+ L A ++RG Y+ +V+ + ++ + ATV G E Y +I LT G Sbjct: 9 IQKLFPSAFYKRGLTYYKNDQVKDVVFDR----NHNVWTATVQGSEDYFVEIGLTDMEKG 64 Query: 64 DVNGKCSCPAYRNGGPFCKHIAAVLVAI-LYEEDGDGPLSAQGTTAGRNKPEVFTGKTGV 122 ++ C CPA+ G CKHI A L+AI E +GD + E + + Sbjct: 65 SIDTFCDCPAFETFGS-CKHIVASLIAISTLENNGDASIRQPNFYRSSRFIEAMSN---I 120 Query: 123 LFPRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEVICRPF 182 L P D + ++ + VE I + Sbjct: 121 LTPLDAVEEENYSSSE----------------------------------MSVEYIG-SW 145 Query: 183 SYNFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNA 242 +Y+ R L +E+K G + Y+V+ + +FL+ V EPF F+K F Y+P++HSF + D Sbjct: 146 TYD---RRLQLEIKTGEQHRYVVRNVASFLDAVQDQEPFSFTKKFTYEPSIHSFLEADME 202 Query: 243 VLLKLIEILLNERVYRDNIGPYSSYSINLGGE----RLLAIPPFFWESLLPALAASPSVY 298 +L L ++ NE +Y SY+ GG R + IPP+ + LL L + Y Sbjct: 203 ILRILHDLCKNEELY-------DSYT--FGGRSTDRRYVTIPPYVVKDLLFKLV-DRNFY 252 Query: 299 LQIGDTLTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKL 358 + T IQ+ + LP F + D + L + L + Y ++ +G Sbjct: 253 IVDNVTQYKDIQLQENELPFQFYITKQD-EHVVLSMSELKETIFFPLYNILFQQGVFYFP 311 Query: 359 PVQECRRLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQT 418 ++ L +++K + D+ Q + F+ +VIP L+++G + + D +++ +++ Sbjct: 312 TYEQIPVLQQMEKF--RFEDMNFDVPKEQTDTFLSEVIPSLQRIGDIDMDDHLSEELIKA 369 Query: 419 QLQAXXXXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAH 478 LQA LE+QYG+ I+P ++ H+V+++RD E+ I++ + Sbjct: 370 PLQAKCYLELRDGLIIGKLEYQYGSHRIDPF---QGKKDHQVMIIRDVPQEKLIMKYIED 426 Query: 479 ESFART-ESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTWN 537 +F + Y+ ++EE Y FLYH +P L+ ++++ ++ + + P S+ Sbjct: 427 ANFRYNGKELYMDAEEEDLYHFLYHVLPYLDNYVELFLSSEFRGLFIENEPEPYTSVRME 486 Query: 538 EKTDWLDFKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELG 597 +++ L+ F +DGI ++E+ +L+++ E+++++RL G ++ LET E + L +++ Sbjct: 487 GQSNLLEIGFNIDGINDNEVNKILQAVIERKRFFRLQSGQMMNLETEEFSSMQRLFDDMR 546 Query: 598 VHAADIKSPEFSLPLVRGLHMNAEAGKGGTDAVSIGRS----FRRLLANMHSPENLDFPV 653 + ++ + +P RG ++ D + + FR LL+++HSPE + + Sbjct: 547 ISKEELLDGKVQMPAYRGSQLD--------DLIETKKHYDPHFRDLLSHLHSPEEQVYEI 598 Query: 654 PETLAPVLRDYQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQP 713 PE + LR YQ+ G+QW K+L+ Y GGILADDMGLGKTLQSI +L+SE +T P Sbjct: 599 PENVQANLRSYQKVGYQWFKSLSQYHLGGILADDMGLGKTLQSITYLVSESNG--ETIGP 656 Query: 714 ALIVAPASLLYNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDV 773 LIV P+S++YNW+NEL++FAP + A++ GN R + + + D+ ITSY LR+D+ Sbjct: 657 HLIVVPSSVVYNWKNELEKFAPHLQVAVLTGNPIERHQVMSESTNKDIWITSYATLRQDI 716 Query: 774 ELYVKRSFHTLILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVV 833 E Y + +F TL+LDEAQ IKN+ T+T++A++ ++A RFAL+GTP+EN++E+LWSI+ VV Sbjct: 717 EFYQEITFQTLLLDEAQYIKNYQTKTSRAIRQIKATRRFALSGTPIENSIEELWSIFQVV 776 Query: 834 FPGLFPGKKAFHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYV 893 PGL P +++F L + +A RPF+LRRLK DVLKELP+KIE++ SEL EQK LYV Sbjct: 777 LPGLMPDQRSFKQLEPKKIAAITRPFILRRLKQDVLKELPEKIESVHVSELTREQKDLYV 836 Query: 894 AYLARLRKEALKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEI 953 YL ++++EA++ +GF + R+K+LAGLTRLRQ+CCHP++F++ Y G SGK EQL+E Sbjct: 837 GYLRQVQQEAVQSFKENGFQQNRMKILAGLTRLRQICCHPSMFIENYEGASGKLEQLMET 896 Query: 954 IGECRSSGKRVLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERD 1013 I +GKR+LIFSQFT M +I L +FYL G T S +RVE+ RFN GE D Sbjct: 897 IKTALDNGKRMLIFSQFTSMHEIIQERLKKEGYGYFYLHGQTSSKERVEMSERFNHGEND 956 Query: 1014 LFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTV 1073 +FLISLKAGGTGLNLTGADTVIL+DLWWNPAVE QA RAHR GQKKVVQVIRL+ +GT+ Sbjct: 957 IFLISLKAGGTGLNLTGADTVILFDLWWNPAVEDQATGRAHRFGQKKVVQVIRLVTEGTI 1016 Query: 1074 EDKMYELQQKKKNLIDEVIEPGQEALSALSEQDIREIL 1111 E+K+Y+LQQ+K+ LID+VI+PG+ LS+L+E DI+E+L Sbjct: 1017 EEKIYDLQQRKRELIDQVIQPGETMLSSLNEDDIKELL 1054 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,635,997,281 Number of extensions: 70800617 Number of successful extensions: 177095 Number of sequences better than 1.0e-05: 1110 Number of HSP's gapped: 173366 Number of HSP's successfully gapped: 1433 Length of query: 1113 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 977 Effective length of database: 387,984,114 Effective search space: 379060479378 Effective search space used: 379060479378 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)