BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0199.0004.p
         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00098265.1| COG2931: RTX toxins and related Ca2+-binding ...    89   3e-17
ref|ZP_00099361.1| hypothetical protein [Desulfitobacterium hafn...    87   9e-17
ref|ZP_00098266.1| COG3468: Type V secretory pathway, adhesin Ai...    86   3e-16
ref|ZP_00099362.1| COG4625: Uncharacterized protein with a C-ter...    85   4e-16

>ref|ZP_00098265.1| COG2931: RTX toxins and related Ca2+-binding proteins
           [Desulfitobacterium hafniense]
          Length = 390

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 11/104 (10%)

Query: 1   VLGVRPTQLLTVKVLCRNTVDAVS---VTIQGYVLDAT-RTLYVNEVLHIAPNEVVTRNY 56
           V G RP+    V V  R T D  S   V I GY  + + + +YV E++++ PNEV+TR Y
Sbjct: 24  VNGARPS----VSVALRITNDGDSTETVRITGYYPNGSFKEVYVLEIVNVNPNEVITREY 79

Query: 57  FADLDGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           FADLD FEF+F+T   ++E V IS+WGK + G LVDAHRV+  E
Sbjct: 80  FADLDAFEFVFST---SSETVAISVWGKDAEGNLVDAHRVLPAE 120


>ref|ZP_00099361.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 116

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 7/102 (6%)

Query: 1   VLGVRPTQLLTVKVLCRNTVDAV-SVTIQGYVLDA-TRTLYVNEVLHIAPNEVVTRNYFA 58
           V GVRP+   ++ VL  N VD + SV ++GY L   T+ LYV E+ +I P EVV RNYFA
Sbjct: 14  VFGVRPSS--SLSVLVTNNVDTLESVLLRGYYLSGNTKILYVEELFNIGPAEVVLRNYFA 71

Query: 59  DLDGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           D DG EF F     +++ V  +LWGK + G L  AHRVV  E
Sbjct: 72  DFDGIEFQFI---VSSQGVNATLWGKDAEGNLQTAHRVVAQE 110


>ref|ZP_00098266.1| COG3468: Type V secretory pathway, adhesin AidA [Desulfitobacterium
           hafniense]
          Length = 445

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 11/104 (10%)

Query: 1   VLGVRPTQLLTVKVLCRNTVDAVS---VTIQGYVLDAT-RTLYVNEVLHIAPNEVVTRNY 56
           V G RP+    V V  R T D  S   VTI GY L+ T + +YV E++ + PNEV+ R Y
Sbjct: 14  VDGARPS----VSVALRITNDGDSTETVTITGYYLNGTIKEVYVLELVTVNPNEVIIREY 69

Query: 57  FADLDGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           +A+LD FEF+F+T   ++E V IS+WGK + G LVDAHRV+  E
Sbjct: 70  YANLDAFEFVFST---SSETVVISVWGKDAEGNLVDAHRVLPAE 110


>ref|ZP_00099362.1| COG4625: Uncharacterized protein with a C-terminal OMP (outer
           membrane protein) domain [Desulfitobacterium hafniense]
          Length = 566

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 7/100 (7%)

Query: 3   GVRPTQLLTVKVLCRNTVDAVS-VTIQGYVLDAT-RTLYVNEVLHIAPNEVVTRNYFADL 60
           GVRP+  ++V +   N  D+V  V I GY L+   + +YV E L I P EVV R YFADL
Sbjct: 16  GVRPS--VSVAIRITNDGDSVEMVEIIGYYLNGLFKEVYVLEELSIIPGEVVLREYFADL 73

Query: 61  DGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           D FEF+F+T   ++E V IS+WGK + G LVDAHRV+  E
Sbjct: 74  DAFEFVFST---SSETVVISVWGKDAEGNLVDAHRVLPAE 110


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 141,869,066
Number of extensions: 4616848
Number of successful extensions: 10181
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10177
Number of HSP's successfully gapped: 4
Length of query: 106
Length of database: 757,237,578
Length adjustment: 72
Effective length of query: 34
Effective length of database: 561,750,450
Effective search space: 19099515300
Effective search space used: 19099515300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)