BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0001.p (620 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_143342.1| arginyl-tRNA synthetase [Pyrococcus horikoshii]... 328 2e-88 ref|NP_126370.1| arginyl-tRNA synthetase [Pyrococcus abyssi] >gi... 318 2e-85 ref|NP_579109.1| arginyl-tRNA synthetase [Pyrococcus furiosus DS... 316 1e-84 gb|EAK20518.1| unknown [environmental sequence] 304 4e-81 ref|NP_296288.1| arginyl-tRNA synthetase [Deinococcus radioduran... 286 1e-75 >ref|NP_143342.1| arginyl-tRNA synthetase [Pyrococcus horikoshii] sp|O59147|SYR_PYRHO Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) pir||A71023 arginine-tRNA ligase (EC 6.1.1.19) - Pyrococcus horikoshii dbj|BAA30585.1| 629aa long hypothetical arginyl-tRNA synthetase [Pyrococcus horikoshii] Length = 629 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 213/630 (33%), Positives = 324/630 (51%), Gaps = 72/630 (11%) Query: 33 LEQPPNADFGDYSSNIAMQLAKKLRKTPMAVAGLITAEFQRIGAAGGIVQRIEIANPGFI 92 L++ P+ GD+ + IA +LAK L++ P+ +A I + + G ++ ++ N G+I Sbjct: 30 LKETPDPKLGDFGTPIAFKLAKLLKRPPIEIAEKIVEKLKLNLPEG--IKDVKAVN-GYI 86 Query: 93 NLYINWQEWA----------GQTFKLPP-GSGEKVIIEHTSVNPNKSLHIGHLRNSCIGD 141 N++I++ +A G F G G+KVI+EHTSVNP K LH+GH RN+ +GD Sbjct: 87 NVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGD 146 Query: 142 ALVRILRKTGHNVEVHNYVDDLGNQLADTVVGLLRVPLAGEHVR-------FGDYCWD-- 192 + RILR G+ VEV NY+DDLG Q A G LR+ E + D D Sbjct: 147 VMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHA 206 Query: 193 ---IYAAVNKKYAEQPEMIRQRTEILHELEEGHGNTAWLGQLAAERIVREHVAEMRSFGI 249 +Y VN++ + PE+ + +I+ +LE G G+ AE +VR + G+ Sbjct: 207 LGLLYVEVNRRLEDNPELENEIRDIMKKLESGE----LYGRKLAEEVVRAQMVTTYKLGV 262 Query: 250 EYDLLVWESSIVQAGFWSSASGLLKETDMFVQETEGKLAGCWILK-QPAAEGMENGSEDH 308 +YDLLVWES IV+ + A LL + + F ++GK G +++ + M+N Sbjct: 263 KYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPI--- 319 Query: 309 QKDKVLVRSNGILTYTAKDIAYHLWKFGLLDKDFTYSEFNAGLWTTGLTGA--PKSFGKA 366 VL RS+G TYT KDIAYHLWKFG +D D Y E+++ WTT G P FG A Sbjct: 320 ---LVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNA 376 Query: 367 DRVVNVIDYRQEYPQAMVKQALEVLGFTAQAEKLHHVSYGVVSLSPASAAGLGIDTSDGK 426 + V+NVI Q++PQ +K AL++LGF A L+H++Y ++ +GK Sbjct: 377 NIVINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYE------------HVERPEGK 424 Query: 427 SSYAMSGRQG--IGVKVADLVQ--------LMESSIEAARSDVTGLSSRLIATAAIRYYL 476 SGR+G +G V +++Q L+E A + + + AIRY L Sbjct: 425 ----FSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNL 480 Query: 477 LRFNLGTEIVFDFKQATEISGNTGVYLMYTYARAGRVLSKAE------DPAELTAVPRFP 530 ++++ +I+F ++ G + Y+ Y +AR +L KAE DP L F Sbjct: 481 IKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADF- 539 Query: 531 AQLDTAELALLRQLSTWEDTLYTAGRELTPNTICSYAHTLASLFNNFYSSCPILKGEESS 590 +L E L+ LS + + AG+++ P+ I +A+ LASLFN FY P+LK EE Sbjct: 540 TKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVLKAEEGV 599 Query: 591 IRFRLWLTLRFQSTLGEVLELLGLPKPERM 620 RL L + + L L L+G+ PERM Sbjct: 600 REARLLLVMAVEQVLKNALYLMGIEAPERM 629 >ref|NP_126370.1| arginyl-tRNA synthetase [Pyrococcus abyssi] sp|Q9V0V2|SYR_PYRAB Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) pir||H75110 arginyl-tRNA synthetase (args) PAB0469 - Pyrococcus abyssi (strain Orsay) emb|CAB49601.1| argS arginyl-tRNA synthetase [Pyrococcus abyssi] Length = 625 Score = 318 bits (816), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 217/658 (32%), Positives = 328/658 (49%), Gaps = 71/658 (10%) Query: 1 MLSQWIKNQLEQCAANVINSLGEASAEPATVLLEQPPNADFGDYSSNIAMQLAKKLRKTP 60 MLS+ +K + VI SL A + + P+ + GD+ + +A +LA+ ++K P Sbjct: 1 MLSR-VKEGAREKIIKVIESL--APGWKGEIEFKDTPSPELGDFGTPVAFKLARVMKKPP 57 Query: 61 MAVAGLITAEFQRIGAAGGIVQRIEIANPGFINLYINWQEWAGQTF-----------KLP 109 +A LI E ++ G ++ + N G++N ++++ A Q Sbjct: 58 FQIAELIVEELKKELPEG--IREVRAIN-GYVNFFVDYGYLARQLIVEVLEKGDRFGSSD 114 Query: 110 PGSGEKVIIEHTSVNPNKSLHIGHLRNSCIGDALVRILRKTGHNVEVHNYVDDLGNQLAD 169 G G+KVI+EHTSVNP K LH+GH RN+ +GD++ RILR G+ VEV NY+DDLG Q A Sbjct: 115 IGRGKKVIVEHTSVNPTKPLHMGHARNAILGDSMARILRFLGYEVEVQNYIDDLGIQFAQ 174 Query: 170 TVVGLLRVPLAGEHVR------------FGDYCWDIYAAVNKKYAEQPEMIRQRTEILHE 217 G L++ E + +Y VN+ E PE+ + +I+ + Sbjct: 175 VYWGYLKLREKFEKIMKELKEKGIKEDPIDHVLGLLYVEVNRVLEENPEIEAEIRDIMKK 234 Query: 218 LEEGHGNTAWLGQLAAERIVREHVAEMRSFGIEYDLLVWESSIVQAGFWSSASGLLKETD 277 LE G N G+ AE +VR + GI+YDLLVWES IV + A LL+ + Sbjct: 235 LESGELN----GRELAESVVRAQMVTTYRLGIKYDLLVWESDIVSRKLFEIAVKLLERNE 290 Query: 278 MFVQETEGKLAGCWILK-QPAAEGMENGSEDHQKDKVLVRSNGILTYTAKDIAYHLWKFG 336 F EGK G +++ M+N VL RS+G TYT KDIAYHLWKFG Sbjct: 291 NFYTPNEGKYKGAFVMDLSKLFPDMKNPY------LVLRRSDGTATYTGKDIAYHLWKFG 344 Query: 337 LLDKDFTYSEFNAGLWTTGLTG--APKSFGKADRVVNVIDYRQEYPQAMVKQALEVLGFT 394 +D D Y ++ WTT G FG AD V+NVI Q +PQ +K AL++LGF Sbjct: 345 KIDVDLLYKPWDEHTWTTAPDGESVKGKFGGADIVINVIGAEQRHPQMAIKHALKLLGFE 404 Query: 395 AQAEKLHHVSYGVVSLSPASAAGLGIDTSDGKSSYAMSGRQG--IGVKVADLV-QLMESS 451 AE LHH++Y ++ +GK SGR+G +G V +++ + ++ + Sbjct: 405 DAAENLHHLAYE------------HVERPEGK----FSGRKGTWVGFTVDEVINEAIKRA 448 Query: 452 IEAARSDVTGLS-------SRLIATAAIRYYLLRFNLGTEIVFDFKQATEISGNTGVYLM 504 E GLS + + AIRY +++++ +I+F ++ G + Y+ Sbjct: 449 RELIEEKSPGLSDEEKEEIAEKVGVGAIRYNMVKYSPDKKIIFRWEDVLNFEGESAPYIQ 508 Query: 505 YTYARAGRVLSKAEDP--AELTAVPRFPAQLDTAELALLRQLSTWEDTLYTAGRELTPNT 562 Y +AR +L KA +P L F +L E L+ LS + + + AGR++ P+ Sbjct: 509 YAHARCSSILRKAGNPEWEALLKEANF-KELTERERELIILLSKFPEVVEQAGRDVKPHL 567 Query: 563 ICSYAHTLASLFNNFYSSCPILKGEESSIRFRLWLTLRFQSTLGEVLELLGLPKPERM 620 I YA+ LASLFN FY P++K E+ RL L + + L L LLG+ P+RM Sbjct: 568 IAWYANELASLFNKFYMDHPVIKAEKGIREARLLLVMAVRQVLRNSLWLLGIEAPDRM 625 >ref|NP_579109.1| arginyl-tRNA synthetase [Pyrococcus furiosus DSM 3638] sp|Q8U149|SYR_PYRFU Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) gb|AAL81504.1| arginyl-tRNA synthetase [Pyrococcus furiosus DSM 3638] Length = 629 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 210/657 (31%), Positives = 327/657 (49%), Gaps = 74/657 (11%) Query: 6 IKNQLEQCAANVINSLGEASAEPATVLLEQPPNADFGDYSSNIAMQLAKKLRKTPMAVAG 65 IK+++++ ++ + +E + P+ + GD+ + +A QLA+ LRK+P+ +A Sbjct: 5 IKSEIKRTIEGIVREMAPDWSE--DIQFVDTPSPELGDFGTPVAFQLARLLRKSPLIIAQ 62 Query: 66 LITAEFQRIGAAGGIVQRIEIANPGFINLYINWQE-----------WAGQTFKLPPGSGE 114 I +F + + IA G++N ++++ + + + + G G+ Sbjct: 63 EIAEKFNKNKPKE---VKKAIAVNGYVNFFLDYPQISKLVIEAILGYGTEYGRSEIGKGK 119 Query: 115 KVIIEHTSVNPNKSLHIGHLRNSCIGDALVRILRKTGHNVEVHNYVDDLGNQLADTVVGL 174 KVI+EHTSVNP K LH+GH RN+ +GD + RILR G+ VEV NY+DDLG Q A G Sbjct: 120 KVIVEHTSVNPTKPLHMGHARNAILGDTVARILRFLGYQVEVQNYIDDLGVQFAQVYWGY 179 Query: 175 LRVPLAGEHVR------------FGDYCWDIYAAVNKKYAEQPEMIRQRTEILHELEEGH 222 L + + + +Y VNKK E E+ ++ E++ +LEE Sbjct: 180 LNLKRKFDELMKELKEKIPKNNPIDHVLGLLYVEVNKKIEESSEVEKEIRELMKKLEERE 239 Query: 223 GNTAWLGQLAAERIVREHVAEMRSFGIEYDLLVWESSIVQAGFWSSASGLLKETDMFVQE 282 N G+ AE +V+ + + S I YDLLVWES IV + LL++ + F Sbjct: 240 LN----GRKLAEEVVKAQMETLYSLNIYYDLLVWESDIVSTRLFEKTIKLLEKNENFYTP 295 Query: 283 TEGKLAGCWILK-QPAAEGMENGSEDHQKDKVLVRSNGILTYTAKDIAYHLWKFGLLDKD 341 EGK G +++ M+N VL RS+G TYT KDIAYHLWKFG +D D Sbjct: 296 KEGKYKGAFVMDLSKLFPDMKNPY------LVLRRSDGTATYTGKDIAYHLWKFGKIDID 349 Query: 342 FTYSEFNAGLWTTGLTGA--PKSFGKADRVVNVIDYRQEYPQAMVKQALEVLGFTAQAEK 399 Y +++ WTT G P FG D V+NVI Q +PQ +K ALE+LG+ AE Sbjct: 350 LMYKKWDEHTWTTAPDGEPIPGKFGAGDIVINVIGAEQRHPQLAIKYALELLGYKDAAEN 409 Query: 400 LHHVSYGVVSLSPASAAGLGIDTSDGKSSYAMSGRQGIGVK------VADLVQLMESSIE 453 HH++Y +++ +GK SGR+G V +A+ + +S IE Sbjct: 410 FHHLAYE------------HVESPEGK----FSGRKGTWVGFTVDEVIAEAINKAKSLIE 453 Query: 454 AARSDVT----GLSSRLIATAAIRYYLLRFNLGTEIVFDFKQATEISGNTGVYLMYTYAR 509 ++T ++ +A AIRY L++++ +IVF ++ G + Y+ Y +AR Sbjct: 454 EKNPNLTEEEKEEIAKKVAVGAIRYTLIKYSPEKKIVFRWEDVLNFEGESAPYIQYAHAR 513 Query: 510 AGRVLSKAE------DPAELTAVPRFPAQLDTAELALLRQLSTWEDTLYTAGRELTPNTI 563 +L KAE D L V F Q+ E L+ LS + + + AG +L P+ I Sbjct: 514 CSSILRKAEELGISTDWKSLLKVANF-NQITEKERELIMLLSRFPEIVQQAGTDLKPHLI 572 Query: 564 CSYAHTLASLFNNFYSSCPILKGEESSIRFRLWLTLRFQSTLGEVLELLGLPKPERM 620 YA+ +AS FN FY P++K EE RL L + + L L L+G+ P++M Sbjct: 573 AWYANEVASTFNKFYMDHPVIKAEEGVREARLLLVMATRQVLRNSLWLMGIEAPDKM 629 >gb|EAK20518.1| unknown [environmental sequence] Length = 628 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 194/621 (31%), Positives = 319/621 (51%), Gaps = 70/621 (11%) Query: 41 FGDYSSNIAMQLAKKLRKTPMAVAGLITA--EFQRIGAAGGIVQRIEIANPGFINLYINW 98 FGD + N+A L+K+L+K+P ++ ++ +F I ++ +E G++N I++ Sbjct: 37 FGDITCNVAFLLSKQLKKSPQEISKELSKLYKFDHIPQ----IKNVESHASGYLNFNIDY 92 Query: 99 QEWAGQTFK---------LPPGSGEKVIIEHTSVNPNKSLHIGHLRNSCIGDALVRILRK 149 ++ L G EK+++EHTSVNPNK+LH+GH+RN +GD + +ILRK Sbjct: 93 TQFTNLVIDSSLQENYGSLDIGHNEKIVVEHTSVNPNKALHVGHIRNVILGDIVSKILRK 152 Query: 150 TGHNVEVHNYVDDLGNQLADTVVGLLRVPLAG---EHVRFGDYCWD-IYAAVNKKYAEQP 205 +V+V NYVDD G Q+AD +VG + + E+ +F YC D +Y +KY Sbjct: 153 GNFDVKVLNYVDDSGLQVADIIVGFTELGFSQEPPENEKFDHYCGDTVYVKTTEKYETDK 212 Query: 206 EMIRQRTEILHELEEGHGNTAWLGQLAAERIVREHVAEMRSFGIEYDLLVWESSIVQAGF 265 ++ +R EIL ++E+ + + Q +++ E + + + G+ YD L +ES I+ + Sbjct: 213 QLEEKRHEILKQIEDSSSTISKMAQTITRKVLDEQLKTVWNLGVFYDCLNFESQIIHSKL 272 Query: 266 WSSASGLLKETDMFVQETEGKLAGCWILKQPAAEGMENGSEDHQKDKVLVRSNGILTYTA 325 W LK + E G AGCW++ AEG + DK+LVRSNG+ TY A Sbjct: 273 WDKIFEKLKSENQIKYEETGDNAGCWVI---PAEG--------EDDKILVRSNGVATYIA 321 Query: 326 KDIAYHLWKFGLLDKDFTYS-----EFNAGLWTTGLT-----GAPKSFGKADRVVNVIDY 375 KDI Y WK GL+D F+Y + + L+ T L K ++V+ VID Sbjct: 322 KDIPYAAWKLGLVDDPFSYKIHSTQKNSQTLYETTLDEISDHDDDKLNLSGNKVITVIDN 381 Query: 376 RQEYPQAMVKQALEVLGFTAQAEK---LHHVSYGVVSLSPASAAGLGIDTSDGKSSYAMS 432 RQ Q +V G A+ ++ H+ Y V+LS + LG+ + DG+S+ MS Sbjct: 382 RQIRLQKIVS------GLMAKFKEEGAYTHLGYESVTLSADTVKSLGL-SVDGESA-QMS 433 Query: 433 GRQGIGVKVADLVQLMESSI-EAARSDVTGLS-------SRLIATAAIRYYLLRFNLGTE 484 GR+G+ V +++ + + + ++S LS + ++A IRY +++ +L Sbjct: 434 GRKGLYVNADTVLETLTKRVYDESKSRNENLSESELENIANIVAVGTIRYEMIKPDLDKI 493 Query: 485 IVFDFKQATEISGNTGVYLMYTYARAGRVLSKAEDPAELTAVPRFPAQLD----TAELAL 540 I FD K + + G+T Y+ Y+YARA R+L K E P F + + E L Sbjct: 494 ITFDLKNSLRLEGDTCSYIQYSYARASRILEKTE------TKPNFDSGFELLSSEYEKNL 547 Query: 541 LRQLSTWEDTLYTAGRELTPNTICSYAHTLASLFNNFYSSCPILKGEESS-IRFRLWLTL 599 +++++ ++ + + +P I Y++ LA F++FY +LK E + RL L + Sbjct: 548 IKKIAMFDVQVNDSVNNFSPKVIAKYSYDLAVTFSSFYEHVKVLKSETPELLNARLCLVV 607 Query: 600 RFQSTLGEVLELLGLPKPERM 620 FQ TL L LLG+ PERM Sbjct: 608 SFQKTLKSSLGLLGIDAPERM 628 >ref|NP_296288.1| arginyl-tRNA synthetase [Deinococcus radiodurans] sp|Q9RRC4|SYR_DEIRA Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) pir||B75257 arginyl-tRNA synthetase - Deinococcus radiodurans (strain R1) gb|AAF12109.1| arginyl-tRNA synthetase [Deinococcus radiodurans] Length = 609 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 212/649 (32%), Positives = 319/649 (49%), Gaps = 76/649 (11%) Query: 6 IKNQLEQCAANVINSLGEASAEPATVLLEQPPNADFGDYSSNIAMQLAKKLRKTPMAVAG 65 +K QL+ + +G P +++ P GDY + A Q+AK P +A Sbjct: 3 LKAQLKAAVEQAAHQMGM----PVDAAIQETPANKPGDYGTPAAFQMAKAAGGNPAQIAA 58 Query: 66 LITAEFQRIGAAGGIVQRIEIANPGFINLYINWQEWAG----QTFKLPPGSGEKVIIEHT 121 + Q + GI +R+E P F+N +++ + + F+LP G KV+IEHT Sbjct: 59 QLA---QTVVLPAGI-RRVEATGP-FLNFFLDAGAFVRGVVERPFELPKREG-KVVIEHT 112 Query: 122 SVNPNKSLHIGHLRNSCIGDALVRILRKTGHNVEVHNYVDDLGNQLADTVVGLLRVPLAG 181 SVNPNK LH+GHLRN +GD++ RILR GH VEV NY+DD G Q A+++ Sbjct: 113 SVNPNKELHVGHLRNVVLGDSMARILRAAGHTVEVQNYIDDTGRQAAESLFATQHYGRVW 172 Query: 182 EHV-RFGDYCWDIYAAVNKKYAEQPEMIRQRTEILHELEEGHGNTAWLGQLAAERIVREH 240 + V ++ + + Y +N ++PE+ EI+H+LE G L L E+ V+ Sbjct: 173 DGVQKYDQWLGEGYVQLNAD-PQKPELESGIMEIMHKLEAGE-----LRPL-VEQTVKAQ 225 Query: 241 VAEMRSFGIEYDLLVWESSIVQAGFWSSASGLLKETDMFVQETEGKLAGCWILKQPAAEG 300 + G YDLL WES +V +GF + A +L+ + + TEGK AG +I+ +E Sbjct: 226 LQTCFRLGARYDLLNWESDVVGSGFLAQAMNILEGSRYTSRPTEGKYAGAFIMD--VSEF 283 Query: 301 MENGSEDHQKDKVLVRSNGILTYTAKDIAYHLWKFGLLD----KDFTYSEFNAGLWTTGL 356 M E + VLVRS G Y AKDI Y WKFGL + K F +WT+ Sbjct: 284 MPGLEE---PNVVLVRSGGTAMYAAKDIGYQFWKFGLFEGMKFKPFMQDPEGNTIWTSAP 340 Query: 357 TGAP---KSFGKADRVVNVIDYRQEYPQAMVKQALEVLGFTAQAEKLHHVSYGVVSLSPA 413 G P + FG A V+NVID RQ++PQ +V+ AL V G + E+ H+SY V+L Sbjct: 341 DGQPDDERRFGHAQEVINVIDSRQDHPQTVVRSALGVAGEQEKEERSIHLSYAFVTLEGQ 400 Query: 414 SAAGL-GI-----DTSDGKSSYAMSGRQGIGVKVADLVQLMESSIEAARSDVTGLSSRLI 467 + +G GI D D A+S QGI DL AAR D ++ R I Sbjct: 401 TISGRKGIAVSADDAMDEAQKRALSVLQGIN---PDL---------AAREDAAEIARR-I 447 Query: 468 ATAAIRYYLLRFNLGTEIVFDFKQATEISGNTGVYLMYTYARAGRVLSKAEDP------- 520 AIR+ +L+ +I F ++QA ++G+T Y+ Y RA +L KAE+ Sbjct: 448 GLGAIRFAMLKAEPTRKIDFRWEQALALNGDTAPYVQYAAVRAANILKKAEEAGYATDGT 507 Query: 521 -AELTAVPRFPAQLDTAELALLRQLSTWEDTLYTAGRELTPNTICSYAHTLASLFNNFYS 579 A+ A+P +L L +Q++ + A R +P+ + YA LA+ FN +Y+ Sbjct: 508 GADWDALPDI-------DLVLAKQIAKLPEVAAQAARIHSPHVVAQYALDLATSFNAWYN 560 Query: 580 --------SCPILKGEESSIRFRLWLTLRFQSTLGEVLELLGLPKPERM 620 + +L+ EE RL L +R + + L+L+G+ P M Sbjct: 561 AKTKQGKPATNVLQSEEGLREARLALIVRLRKAFEDTLDLIGIEIPAAM 609 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 923,941,116 Number of extensions: 38393240 Number of successful extensions: 96831 Number of sequences better than 1.0e-05: 627 Number of HSP's gapped: 95562 Number of HSP's successfully gapped: 785 Length of query: 620 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 488 Effective length of database: 398,844,510 Effective search space: 194636120880 Effective search space used: 194636120880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)