BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0020.p (152 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00120209.1| hypothetical protein [Cytophaga hutchinsonii] 170 9e-42 ref|NP_866570.1| hypothetical protein RB5211 [Pirellula sp. 1] >... 143 1e-33 ref|NP_815441.1| hypothetical protein [Enterococcus faecalis V58... 119 1e-26 gb|EAK66818.1| unknown [environmental sequence] 119 3e-26 gb|EAD60870.1| unknown [environmental sequence] 114 6e-25 >ref|ZP_00120209.1| hypothetical protein [Cytophaga hutchinsonii] Length = 151 Score = 170 bits (431), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 77/140 (55%), Positives = 104/140 (74%) Query: 6 NSPEDYISQLPEERREAVTKLRQTIKVNLPEGFQETMSHGMINYVVPHKLYAPGYHVNPE 65 S DYI+QLPE+R++ V +LR + +LP+GF ET+++GMI YVVPH LY GYH +P Sbjct: 4 TSVNDYITQLPEDRKKPVEQLRAVLLASLPKGFAETITYGMIGYVVPHSLYPKGYHADPA 63 Query: 66 QPLPFVSIASQKNFIALYHMGMYMFPELLAWFKAEYPKHVQTKLDMGKSCVRFKKVDSLP 125 PLPF++IASQKN IA+YHMG+Y ELL WF EY +TK DMGKSC+RFK + ++P Sbjct: 64 LPLPFITIASQKNHIAVYHMGIYSHKELLEWFTKEYYALYKTKPDMGKSCMRFKNLHTIP 123 Query: 126 YDLIAELCRKVTVEEYIQLY 145 Y LI EL K++V+++I +Y Sbjct: 124 YTLIGELAGKISVKDWIHIY 143 >ref|NP_866570.1| hypothetical protein RB5211 [Pirellula sp. 1] emb|CAD78351.1| hypothetical protein [Pirellula sp.] Length = 159 Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 66/145 (45%), Positives = 97/145 (66%), Gaps = 1/145 (0%) Query: 1 MKYASNSPEDYISQLPEERREAVTKLRQTIKVNLPEGFQETMSHGMINYVVPHKLYAPGY 60 M+ + + E Y+++LP +RR + +R+ I N+ EGF+E M +GMI Y VPH ++ GY Sbjct: 10 MQSEAKTVEQYLAELPADRRVMLEDVRKMILANINEGFEEGMQYGMIGYYVPHSIFPAGY 69 Query: 61 HVNPEQPLPFVSIASQKNFIALYHMGMYMFPELLAWFKAEYPKHVQTKLDMGKSCVRFKK 120 H P +PLPF+S+ASQKN+ +LY M +Y E L F++ + K KL+MGKSC+RFKK Sbjct: 70 HCKPSEPLPFLSLASQKNYCSLYAMSLYSDTESLTAFQSAW-KATGKKLNMGKSCIRFKK 128 Query: 121 VDSLPYDLIAELCRKVTVEEYIQLY 145 +D L DLIA+ R +TV+ Y+ Y Sbjct: 129 LDDLALDLIADHLRGITVDAYVDSY 153 >ref|NP_815441.1| hypothetical protein [Enterococcus faecalis V583] gb|AAO81511.1| hypothetical protein [Enterococcus faecalis V583] Length = 155 Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 84/135 (62%) Query: 11 YISQLPEERREAVTKLRQTIKVNLPEGFQETMSHGMINYVVPHKLYAPGYHVNPEQPLPF 70 YI + R A ++ + NLP GF+ TM +GM +VVP ++ GY ++PLPF Sbjct: 11 YIETVEPNWRIAYQQVLDVVSQNLPAGFELTMQYGMPTFVVPLSVFPEGYLNRGDEPLPF 70 Query: 71 VSIASQKNFIALYHMGMYMFPELLAWFKAEYPKHVQTKLDMGKSCVRFKKVDSLPYDLIA 130 +S+ + K +ALYHMG+ + +WF+ Y + V TKL+MGKSC+RF +PY+LI Sbjct: 71 ISLGATKRQVALYHMGLMGNEAVRSWFQEAYQEQVSTKLNMGKSCLRFTNPKRIPYELIG 130 Query: 131 ELCRKVTVEEYIQLY 145 EL K+T+EE++Q Y Sbjct: 131 ELVTKITLEEWLQQY 145 >gb|EAK66818.1| unknown [environmental sequence] Length = 146 Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 59/145 (40%), Positives = 97/145 (66%), Gaps = 4/145 (2%) Query: 1 MKYASNSPEDYISQLPEERREAVTKLRQTIKVNLPEGFQETMSHGMINYVVPHKLYAPGY 60 M+ NS E Y+++LP++R+E+++ +R+TI NLP+G+ E ++ GMI Y VP + + Y Sbjct: 1 MQLKVNSVEQYLNELPDDRKESLSIVRKTIVANLPDGYNEVINWGMITYEVPLERFPETY 60 Query: 61 HVNPEQPLPFVSIASQKNFIALYHMGMYMFPELLAWFKAEYPKHVQTKLDMGKSCVRFKK 120 + ++PL + ++ASQKN ++LY MG YM P++ F+ Y K + K D GKSC+RFKK Sbjct: 61 N---DKPLMYAALASQKNHMSLYLMGCYMSPDIRKNFEDAYKKSGK-KFDAGKSCIRFKK 116 Query: 121 VDSLPYDLIAELCRKVTVEEYIQLY 145 V L +LI + ++VE++I+ Y Sbjct: 117 VQDLSLELIGKTIGSMSVEQFIENY 141 >gb|EAD60870.1| unknown [environmental sequence] Length = 100 Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 51/98 (52%), Positives = 73/98 (74%) Query: 7 SPEDYISQLPEERREAVTKLRQTIKVNLPEGFQETMSHGMINYVVPHKLYAPGYHVNPEQ 66 S ++YI+ L E+++ V K+ I+ LP+GF E +++GM ++VVPH +Y GYH +PE Sbjct: 2 SIKEYINSLSSEKKDTVKKIISVIQRKLPKGFNEQINYGMPSWVVPHSIYPKGYHCSPEL 61 Query: 67 PLPFVSIASQKNFIALYHMGMYMFPELLAWFKAEYPKH 104 PLPF+S+AS+KN+IALYHMG+Y EL+ WF EYPKH Sbjct: 62 PLPFLSLASRKNYIALYHMGIYANKELMEWFVEEYPKH 99 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 234,842,613 Number of extensions: 9125915 Number of successful extensions: 20224 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 20222 Number of HSP's successfully gapped: 6 Length of query: 152 Length of database: 757,237,578 Length adjustment: 111 Effective length of query: 41 Effective length of database: 455,861,589 Effective search space: 18690325149 Effective search space used: 18690325149 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)