BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0013.p (684 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_810803.1| conserved hypothetical protein [Bacteroides the... 619 e-176 ref|NP_979814.1| conserved hypothetical protein [Bacillus cereus... 345 3e-93 ref|NP_391225.1| yvgS [Bacillus subtilis] >gi|7475489|pir||H7004... 342 3e-92 ref|NP_830827.1| ATP-dependent DNA helicase rep [Bacillus cereus... 310 9e-83 ref|NP_843540.1| helicase, UvrD/Rep family [Bacillus anthracis s... 305 2e-81 >ref|NP_810803.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO76997.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 686 Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust. Identities = 312/681 (45%), Positives = 439/681 (64%), Gaps = 5/681 (0%) Query: 1 MIVNRSETDEKVYLQKVAARLQNALEAADRRIHSAGEEILAAKKYLWANSAQIDPAERAA 60 MI N +E EK YLQ+V + + + + D+ + + + K YLW+N IDP E + Sbjct: 1 MIFNETEEQEKAYLQQVLNIINDTINSTDKSVKEHIDTLQEYKDYLWSNK-DIDPHEIRS 59 Query: 61 NKVEISLSIDHGEQAVVKRDRLRKLLQTPYFGRVDFLEDHHP-EALACYIGVHAFAEEDS 119 + I GE + KR+RL K+L PYFGR+DF E+ + L YIG+H F + + Sbjct: 60 MRESILNHFARGENVIDKRNRLSKILDIPYFGRIDFKENGSSGKKLPVYIGIHTFYDFKN 119 Query: 120 QENVIYDWRSPIASMFYDFNTGKAGYSAPSGEVAGEITLKRQYSIKNSELEYMIESSMNI 179 + N+IYDWRSPI+ MFYD+ +G+A YS+PSGEV GEI+LKRQY I+ ++EYMIESS+ + Sbjct: 120 KRNLIYDWRSPISGMFYDYESGEATYSSPSGEVHGEISLKRQYRIRKGKMEYMIESSVTV 179 Query: 180 NDDVLQKELSQTSDEKMKNIVATIQKEQNVIIRNESAHELIIQGVAGSGKTSVALHRVAY 239 +DD+LQKEL +D+KMKNIV TIQ+EQN IIRNE LIIQGVAGSGKTS+ALHR+AY Sbjct: 180 HDDILQKELCSNADDKMKNIVMTIQREQNRIIRNEDTPVLIIQGVAGSGKTSIALHRIAY 239 Query: 240 LLYRYKETLTSQNILIISPNKVFSDYISNVLPELGEEKIRELSFDELASAELAGICGFQT 299 LLY K ++S++ILIISPNKVF+DYISNVLPELGE + E S +++ S L +Q Sbjct: 240 LLYAQKGKISSKDILIISPNKVFADYISNVLPELGETTVPETSMEQILSTVLDNKYKYQN 299 Query: 300 FSQQVAELAGSVDDSVIERIGYKADMDFVHELDDYITYISEAYFIPAGIGVAQ-VQIPVE 358 F QV+EL IERI YKA +FV LD +I ++ YF + + + + IP E Sbjct: 300 FFGQVSELLEKPAPDFIERIQYKASFEFVSRLDKFILHMENHYFRATDVKLTKYITIPAE 359 Query: 359 EVQSAYQSARSLPVRQRLEKTASILSGRARDENGRSLPSATANTIKTAVKKMFKSLNMLT 418 V ++ P+RQR E + + + ++ +A N ++ +K MF N L Sbjct: 360 FVGEQFKRFHRYPIRQRFETMTDYILEMMKIQYNLTVTTAEKNLLRKEIKNMFSGNNDLQ 419 Query: 419 LYKDFYEHTGRPELFKPKKAKLLEFCDVFPLVYLKLRMEGTAGFDSVKHLLVDEMQDYTA 478 +YKDF+E G+PE+FK +K ++LE+ D+ PL YL L ++G ++HLL+DEMQDY+ Sbjct: 420 IYKDFFEWAGKPEMFKMRKNRMLEYADMAPLAYLHLALDGNRTQTHIRHLLIDEMQDYSP 479 Query: 479 IQYRVLSLLFKCKKTILGDXXXXXXXXXXXXXXEIKQVFPGADTVELLKSYRSTLEIIHF 538 IQY+V+ L+ C+KTILGD I++ F + ++L KSYRST EI Sbjct: 480 IQYKVIQKLYPCRKTILGDASQSVNPYGSSTAAMIQKAFTTGEVMKLCKSYRSTFEITSL 539 Query: 539 AQKINHNSRIVPVERHGEPPVIIGAETPEGELSEINRLIAGFRKSGHHSLGVVCKTQEQA 598 AQKI N+ + P+ RHGE P I + E E + I L++ FR SG+ SLG++CKT+ QA Sbjct: 540 AQKIQANNELEPIMRHGEQPEIFPFKNAEEETTGIVNLVSDFRNSGYTSLGIICKTETQA 599 Query: 599 QSLYEVVKRVHKD-IALLDFSSDRFHEGIMITSAHMAKGLEFDQVIIPFCDAVNYRTELD 657 ++L + ++ VH D I+ L S + +GI++TSAHMAKGLEFD+VI+P D NY + +D Sbjct: 600 KALAQKLQ-VHTDNISFLSSLSSAYTKGIVVTSAHMAKGLEFDEVIVPQADNQNYHSTID 658 Query: 658 RNMLYIACTRAMHGLALTFCG 678 ++MLY+A TRAMH + LT+ G Sbjct: 659 KSMLYVAVTRAMHKITLTYSG 679 >ref|NP_979814.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS42422.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 768 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 234/756 (30%), Positives = 381/756 (50%), Gaps = 86/756 (11%) Query: 9 DEKVYLQKVAARLQNALEAADRRIHSAGEEILAAKKYLWAN-SAQIDPAERAANKVEISL 67 +EK + V ++ L+ D R+ S EI++ +K W + ID + A VE + Sbjct: 6 EEKKRVNIVIEKVDEELKELDGRVGSVKSEIVSIRKNFWEDVKVNIDNIKEA---VETAA 62 Query: 68 SIDHGEQAVVKRDR-----------LRKLLQTPYFGRVDFLEDHHPEALACYIGVHAFAE 116 SI + + +R+ L K+ +TPYFGR+DF ED +A YIG+ +F + Sbjct: 63 SIRQEAELLAEREHTHRHTKNEYNLLMKIKETPYFGRIDFKEDDEADADEMYIGIGSFYD 122 Query: 117 EDSQENVIYDWRSPIASMFYDFNTGKAGYSAPSGEVAGEITLKRQYSIKNSELEYMIESS 176 +++ E ++YDWR+PI+S++YD+ G+A Y AP G ++G++ LKRQY I+N ++ M ++ Sbjct: 123 KENDEFLVYDWRAPISSLYYDYTLGRAQYKAPIGTISGDLLLKRQYMIRNGTIQSMFDTG 182 Query: 177 MNINDDVLQKELSQTSDEKMKNIVATIQKEQNVIIRNESAHELIIQGVAGSGKTSVALHR 236 + I D++LQ+ L + + E+MK+IV TIQ+EQN IIRN+ + LI+QG AGSGKTS AL R Sbjct: 183 VTIGDELLQEALGRNASEQMKSIVTTIQREQNQIIRNDKSDVLIVQGTAGSGKTSAALQR 242 Query: 237 VAYLLYRYKETLTSQNILIISPNKVFSDYISNVLPELGEEKIRELSF----DELASAELA 292 VAYLLY Y+ T+ + +L+ SPN++F+ YI+NVLPELGEE +++ +F + + Sbjct: 243 VAYLLYHYRGTVYADQMLLFSPNELFNSYIANVLPELGEENMQQTTFQAYVEHVIGKSFT 302 Query: 293 GICGFQTFSQQVAELAGSVDDSVIERIGYKADMDFVHELDDYITYISEA----------- 341 F + + S ++ ++ I YK+ ++F+ L+ Y + E Sbjct: 303 VEDSFAQLEYVLTKKHESTYETRVKGIQYKSSVEFMGLLEKYAKSLGEKGLHFHDVTCKS 362 Query: 342 -----------YFIPAGIGVA---QVQIPVEEVQSAYQSARSLPVRQRL----------E 377 YF + +A ++Q+ +E V + ++ E Sbjct: 363 EVLIKAKSICDYFYSLDMSIAIPNRMQLTMEWVLRKLNDFEKIEAKKDWVEREVQYLNKE 422 Query: 378 KTASILSGRARDENGRSLPSATANTIKTAVKKMFKSL----------NMLTLYKDFYEHT 427 I +D K VKK F+SL N +++ +E + Sbjct: 423 DYNRIYEKIEKDNQFDYYEKEHELLTKYVVKKHFRSLRRKVKKFAFVNHPAIFEQLFE-S 481 Query: 428 GRPELFKPK-------------KAKLLEFCDVFPLVYLKLRMEGTAGFDSVKHLLVDEMQ 474 + ++F P K K L DV P ++LK +EG VK + +DE+Q Sbjct: 482 KQKDIFVPDCWEDICKQTVKRLKDKQLANEDVTPYLFLKELLEGFKTNHLVKFVFIDEVQ 541 Query: 475 DYTAIQYRVLSLLF-KCKKTILGDXXXXXXXXXXXXXXE-IKQVFPG--ADTVELLKSYR 530 DYT+ Q L LF K K T+LGD I +F +TV+L +SYR Sbjct: 542 DYTSFQLAFLKRLFPKAKWTLLGDLNQNIFSHDYNRENNFISALFANRKVETVQLNRSYR 601 Query: 531 STLEIIHFAQ-KINHNSRIVPVERHGEPPVIIGAETPEGELSEINRLIAGFRKSGHHSLG 589 ST II F + I + + I R G+ PV I + + + + GH ++ Sbjct: 602 STKPIIEFTKCMIPNGNDIEAFNRDGKKPVYIKVSDEREHVENMIFKVKELEEKGHKTIA 661 Query: 590 VVCKTQEQAQSLYEVV-KRVHKDIALLDFSSDRFHEGIMITSAHMAKGLEFDQVIIPFCD 648 V+CKT E+ + E++ +H + L+ + + +G+++ A++AKG+EFD VII Sbjct: 662 VICKTNEECMKVMELIGNTLH--VHLMKKENTTYEKGVVVIPAYLAKGIEFDAVIIFDAS 719 Query: 649 AVNYRTELDRNMLYIACTRAMHGLALTFCGEASGWL 684 +Y E +RN+ Y ACTRAMH L + + GE + +L Sbjct: 720 HESYYRESERNLFYTACTRAMHELYVYYAGELTEFL 755 >ref|NP_391225.1| yvgS [Bacillus subtilis] pir||H70040 hypothetical protein yvgS - Bacillus subtilis emb|CAB15350.1| yvgS [Bacillus subtilis subsp. subtilis str. 168] Length = 774 Score = 342 bits (876), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 240/747 (32%), Positives = 372/747 (49%), Gaps = 93/747 (12%) Query: 25 LEAADRRIH-SAG---EEILAAKKYLWAN-SAQIDPAERAANKVEISLSIDHGEQAVVKR 79 LE +R + SAG +I+ +K W + D A A +E SI + + R Sbjct: 22 LEKKERFLETSAGGLKHDIIGLRKSFWEDVKVNFDDAHEA---IETMASIKQQAELLSDR 78 Query: 80 D-----------RLRKLLQTPYFGRVDFLEDHHPEALACYIGVHAFAEEDSQENVIYDWR 128 + R+ +L ++PYFGR+DF+E+ +A YIG+ + +E + +IYDWR Sbjct: 79 EHNHRRMDQQLKRIHQLKKSPYFGRIDFIENGEEQAERIYIGLASCLDEKEEHFLIYDWR 138 Query: 129 SPIASMFYDFNTGKAGYSAPSGEVAGEITLKRQYSIKNSELEYMIESSMNINDDVLQKEL 188 +PI+S++Y+++ GKA Y P + GE+ LKRQ+ IKN L+ M + M I D++LQ+ L Sbjct: 139 APISSLYYNYSPGKAEYEVPGETIEGEMVLKRQFMIKNGTLKAMFNTDMTIGDEMLQEVL 198 Query: 189 SQTSDEKMKNIVATIQKEQNVIIRNESAHELIIQGVAGSGKTSVALHRVAYLLYRYKETL 248 S SD +MKNIV+TIQKEQN IIRNE + LI+QG AGSGKTS AL RVAYLLYR++ + Sbjct: 199 SHHSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKTSAALQRVAYLLYRHRGVI 258 Query: 249 TSQNILIISPNKVFSDYISNVLPELGEEKIRELSFDELASAELAG--IC--GFQTFSQQV 304 + I++ SPN +F+ Y+S+VLPELGEE + + +F E L C F + Sbjct: 259 DAGQIVLFSPNFLFNSYVSSVLPELGEENMEQATFQEYIEHRLGRKFKCESPFDQLEYCL 318 Query: 305 AELAGSVDDSVIERIGYKADMDFVHELDDYITYI-SEAYFIPAGIGVAQVQIPVEEVQSA 363 E G + + I +KA + F +++Y+T + SE I Q I E++QS Sbjct: 319 TETKGGDFPTRLAGITWKAGLSFQQFINEYVTRLSSEGMIFKNIIFRGQKLITKEQIQSY 378 Query: 364 YQS---ARSLPVRQRLEKTA----SILSGRARDENGRSLPSATANTI-KTAVKKMFKSLN 415 + S S+P R+E+TA S L+ + E + A + K ++K L Sbjct: 379 FYSLDQNHSIP--NRMEQTAKWLLSELNKLEKKERRKDWVVHEAELLDKEDYLDVYKKLQ 436 Query: 416 MLTLYKD--FYEHTGRPEL---------FKPKK--AKLLEFCDVFPL------------- 449 + + F ++ +L FKP K +LL F DV L Sbjct: 437 ERKRFSESTFNDYQREQQLLAAIIVKKAFKPLKQAVRLLAFLDVTQLYLQLFSGWGGKFQ 496 Query: 450 ----------------------------VYLKLRMEGTAGFDSVKHLLVDEMQDYTAIQY 481 +Y++ +EG +KHL +DE QDY+ Q Sbjct: 497 HEKMDAIGELTRSAFTDNKLLYEDAAPFLYMQDLIEGRKKNTKIKHLFIDEAQDYSPFQM 556 Query: 482 RVLSLLFKCKK-TILGDXXXXXXXXXXXXXXEIKQVFPG--ADTVELLKSYRSTLEIIHF 538 + +F T+LGD + F A+ V L ++YRST +I+ F Sbjct: 557 AYMRSIFPAASMTVLGDINQSIYAHTINGDQRMDACFEDEPAEYVRLKRTYRSTRQIVEF 616 Query: 539 AQK-INHNSRIVPVERHGEPPVIIGAETPEGELSEINRLIAGFRKSGHHSLGVVCKTQEQ 597 + + + I P R GE P+++ E E ++ + I +K GH ++ V+CKT Q Sbjct: 617 TKAMLQDGADIEPFNRSGEMPLVVKTEGHESLCQKLAQEIGRLKKKGHETIAVICKTAHQ 676 Query: 598 AQSLYEVVKRVHKDIALLDFSSDRFHEGIMITSAHMAKGLEFDQVIIPFCDAVNYRTELD 657 + + + D+ L+ + F +G+ + ++AKG+EFD V++ +Y TE D Sbjct: 677 CIQAHAHMSE-YTDVRLIHKENQPFQKGVCVIPVYLAKGIEFDAVLVYDASEEHYHTEHD 735 Query: 658 RNMLYIACTRAMHGLALTFCGEASGWL 684 R +LY ACTRAMH LA+ + GEAS ++ Sbjct: 736 RRLLYTACTRAMHMLAVFYTGEASPFV 762 >ref|NP_830827.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579] gb|AAP08028.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579] Length = 777 Score = 310 bits (793), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 211/677 (31%), Positives = 328/677 (48%), Gaps = 76/677 (11%) Query: 82 LRKLLQTPYFGRVDFLEDHHPEALACYIGVHAFAEEDSQENVIYDWRSPIASMFYDFNTG 141 LR++ + PYFGR+DF E+ P A YIGV + + +IYDWR+PI+S++YD+ G Sbjct: 89 LRRMHKAPYFGRIDFKEEGEPSAEQIYIGVATLTDASGENFLIYDWRAPISSVYYDYPPG 148 Query: 142 KAGYSAPSGEVAGEITLKRQYSIKNSELEYMIESSMNINDDVLQKELSQTSDEKMKNIVA 201 A YS P G + G + K QY I+N E++ M ++S+ I D++LQ+ L + +++ M++IVA Sbjct: 149 PAEYSTPEGVIHGNVEKKLQYIIQNGEIDSMFDTSLTIGDEILQQALGKGTNKHMQSIVA 208 Query: 202 TIQKEQNVIIRNESAHELIIQGVAGSGKTSVALHRVAYLLYRYKETLTSQNILIISPNKV 261 TIQ+EQN IIR++ LI+QG AGSGKTS AL R+AYLLY+Y+E L + I++ SPN + Sbjct: 209 TIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLLYKYREWLKADQIILFSPNSM 268 Query: 262 FSDYISNVLPELGEEKIRELSFDELASAELAGICGFQTFSQQVAELAGSVDDSVIE---- 317 F+ Y+SNVLPELGEE +++++F E + L+ + +Q+ + + + Sbjct: 269 FNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDPYEQLEYMLTETNSPTYKTRNA 328 Query: 318 RIGYKADMDFVHELDDYITYISEAYFIPAGIGVAQVQIPV--EEVQSAYQSARSLPVRQR 375 I +KA F + Y + + + G+ I E + Y + SL R Sbjct: 329 SIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIASAKEITEQFYNTDSSLRFHSR 388 Query: 376 LEKTASILS--------------------------------------GRARDENGRSLPS 397 +EK L+ G D + + Sbjct: 389 IEKLTDWLNKQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFQDFEK 448 Query: 398 ATANTIKTAVKKMFKSL----------NMLTLYKDFYEHTGRPELFKPKKAK-------- 439 T + V+K K L N +YK + KPK+ Sbjct: 449 ETRVLGRMIVRKKMKPLRKGVQTLRFINFTGIYKQLFTDASWVPGEKPKEWDDICSLTVN 508 Query: 440 -----LLEFCDVFPLVYLKLRMEGTAGFDSVKHLLVDEMQDYTAIQYRVLSLLFKCKK-T 493 L + D P + LK +EG S+KH+LVDE QDY+ Q+ L LF + T Sbjct: 509 MLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLFPAARMT 568 Query: 494 ILGDXXXX--XXXXXXXXXXEIKQVFPGADT--VELLKSYRSTLEIIHFAQK-INHNSRI 548 +LGD + ++ +T + L +SYRST II F + + I Sbjct: 569 VLGDFNQAIFAHASETVNFDTLTNLYGPDETNGINLTRSYRSTKPIIEFTRALVPEGKNI 628 Query: 549 VPVERHGEPPVIIGAETPEGELSE-INRLIAGFRKSGHHSLGVVCKTQEQAQSLYEVVKR 607 ER G P + EL E I +A + H+++ ++CK+ ++ + YE + Sbjct: 629 HAFERDGAKPTVTKVAN-HNELHEHITAKVAALQTEQHNTIAIICKSAAESAAAYEELSS 687 Query: 608 VHKDIALLDFSSDRFHEGIMITSAHMAKGLEFDQVIIPFCDAVNYRTELDRNMLYIACTR 667 + +DI L+ +S + +GI++ A++AKG+EFD VII Y E R + Y ACTR Sbjct: 688 I-EDIKLVKSTSAEYEQGIVVIPAYLAKGIEFDAVIIYDASKDVYSNESVRRLFYTACTR 746 Query: 668 AMHGLALTFCGEASGWL 684 AMH L L GE S ++ Sbjct: 747 AMHELHLYCVGEVSPFV 763 >ref|NP_843540.1| helicase, UvrD/Rep family [Bacillus anthracis str. Ames] gb|AAP25026.1| helicase, UvrD/Rep family [Bacillus anthracis str. Ames] Length = 776 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 212/677 (31%), Positives = 334/677 (49%), Gaps = 76/677 (11%) Query: 82 LRKLLQTPYFGRVDFLEDHHPEALACYIGVHAFAEEDSQENVIYDWRSPIASMFYDFNTG 141 LR++ + PYFGR+DF E+ A YIGV + + +IYDWR+PI+S++YD+ G Sbjct: 89 LRRMHKAPYFGRIDFKEEGESAAEQIYIGVATLTDASGENFLIYDWRAPISSVYYDYPPG 148 Query: 142 KAGYSAPSGEVAGEITLKRQYSIKNSELEYMIESSMNINDDVLQKELSQTSDEKMKNIVA 201 A YS P G + G + K QY I+N E++ M ++S+ I D++LQ+ L + +++ M++IVA Sbjct: 149 PAEYSTPGGVIHGNVEKKLQYIIQNGEIDSMFDTSLTIGDEILQQALGKGTNKHMQSIVA 208 Query: 202 TIQKEQNVIIRNESAHELIIQGVAGSGKTSVALHRVAYLLYRYKETLTSQNILIISPNKV 261 TIQ+EQN IIR++ LI+QG AGSGKTS AL R+AYLLY+Y+E L + I++ SPN + Sbjct: 209 TIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLLYKYREWLKADQIILFSPNSM 268 Query: 262 FSDYISNVLPELGEEKIRELSFDELASAELAGICGFQTFSQQVAELAGSVDDSVIE---- 317 F+ Y+SNVLPELGEE +++++F E + L+ + +Q+ + + + Sbjct: 269 FNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDPYEQLEYMLTETNSPAYKTRNA 328 Query: 318 RIGYKADMDFVHELDDYITYISEAYFIPAGIGV-AQVQIPVEEV-QSAYQSARSLPVRQR 375 I +KA F + Y + + + G+ ++ + +E+ + Y + SL R Sbjct: 329 SIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIVSAKEITEQFYNTDSSLRFHSR 388 Query: 376 LEKTASILS--------------------------------------GRARDENGRSLPS 397 +EK L+ G D + + Sbjct: 389 IEKLTDWLNKQIDAIEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFQDFEK 448 Query: 398 ATANTIKTAVKKMFKSLNMLTLYKDFYEHTG-RPELFKPKK----AKLLEFCDVFPL--- 449 T + V+K K L F TG +LF KL E+ D+ L Sbjct: 449 ETRVLGRMIVRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWGTGEKLKEWDDICSLTVN 508 Query: 450 ---------------VYLKLRMEGTAGFDSVKHLLVDEMQDYTAIQYRVLSLLFKCKK-T 493 + LK +EG S+KH+LVDE QDY+ Q+ L LF + T Sbjct: 509 MLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLFPAARMT 568 Query: 494 ILGDXXXX--XXXXXXXXXXEIKQVFPGADT--VELLKSYRSTLEIIHFAQK-INHNSRI 548 +LGD + ++ +T + L +SYRST II F + + I Sbjct: 569 VLGDFNQAIFAHASETVNFDTLTNLYGPDETNGINLTRSYRSTKPIIEFTRALVPEGKNI 628 Query: 549 VPVERHGEPPVIIGAETPEGELSE-INRLIAGFRKSGHHSLGVVCKTQEQAQSLYEVVKR 607 ER GE P + E EL E I +A +K H+++ ++CK+ ++ + YE + Sbjct: 629 HAFERDGEKPTVTKVAN-ESELHERITAKVAELQKQNHNTIAIICKSAAESAAAYEALSP 687 Query: 608 VHKDIALLDFSSDRFHEGIMITSAHMAKGLEFDQVIIPFCDAVNYRTELDRNMLYIACTR 667 + ++I L+ +S + +GI++ A++AKG+EFD VII Y E R + Y ACTR Sbjct: 688 I-ENIKLVKSNSAEYEQGIVVIPAYLAKGIEFDAVIIYDASKDVYNDESVRRLFYTACTR 746 Query: 668 AMHGLALTFCGEASGWL 684 AMH L L GE S ++ Sbjct: 747 AMHELQLYSVGEVSPFI 763 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 917,785,482 Number of extensions: 36340765 Number of successful extensions: 116083 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 116029 Number of HSP's successfully gapped: 84 Length of query: 684 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 551 Effective length of database: 396,129,411 Effective search space: 218267305461 Effective search space used: 218267305461 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)