BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0002.p
         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_693242.1| hypothetical protein OB2321 [Oceanobacillus ihe...    62   5e-09
ref|NP_981236.1| conserved hypothetical protein [Bacillus cereus...    52   3e-06
ref|NP_847235.1| conserved hypothetical protein [Bacillus anthra...    52   5e-06
ref|NP_834488.1| hypothetical Cytosolic Protein [Bacillus cereus...    51   8e-06

>ref|NP_693242.1| hypothetical protein OB2321 [Oceanobacillus iheyensis HTE831]
 dbj|BAC14277.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
          Length = 106

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 11  DKKRYFVSVNHGLIQEVR-NDSGEYEVLLTPGELTGLEDILKDLAKEDEYAFRRAFVPYK 69
           DK++YF+SV  G I +VR  ++ ++ +  T  E+T L    +D+ +    +F+RA +P+ 
Sbjct: 2   DKQKYFISVGEGEISQVRYQNNDDFVIYATEDEITLLRSKFEDMHESSFDSFKRAHIPFM 61

Query: 70  SADHDEAIDQFDDQTIRLFQYLHRYGSEETRQQIEKLNVL 109
              +DEA D +D+     FQ L+  G E+T+  I+ + +L
Sbjct: 62  PYHNDEANDMYDNTMTEAFQLLYDLGDEKTKNHIQTMGIL 101


>ref|NP_981236.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS43844.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 105

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 12  KKRYFVSVNHGLIQEVRN-DSGEYEVLLTPGELTGLEDILKDLAKEDEYAFRRAFVPYKS 70
           KK Y++S+ +G I +V+  D+  +E+     E+T L +       ED  +F R+ VP+  
Sbjct: 4   KKTYYISIANGQISQVKTADTYNFEISANDAEITELREYFDQAYVEDLGSFVRSHVPFVE 63

Query: 71  ADHDEAIDQFDDQTIRLFQYLHRYGSEETRQQIEKLNVLPKL 112
             HD   D++D+Q  + ++ ++  G+ ET++ + ++ ++  L
Sbjct: 64  YHHDSNNDRYDEQLQKAYKMIYDLGNHETKELVAQMGIINGL 105


>ref|NP_847235.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP28721.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 105

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 12  KKRYFVSVNHGLIQEVRN-DSGEYEVLLTPGELTGLEDILKDLAKEDEYAFRRAFVPYKS 70
           KK Y++S+ +G I +V+  D+  +E+     E+T L +       ED  +F R+ VP+  
Sbjct: 4   KKTYYISIGNGQISQVKTADTYNFEISANDEEITELREYFDQAYVEDLGSFVRSHVPFVE 63

Query: 71  ADHDEAIDQFDDQTIRLFQYLHRYGSEETRQQIEKLNVLPKL 112
             HD   D++D+Q  + ++ ++  G+ ET++ + ++ ++  L
Sbjct: 64  YHHDSNNDRYDEQLQKAYKMIYDLGNHETKELVAQMGIINGL 105


>ref|NP_834488.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
 gb|AAP11689.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
          Length = 105

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 12  KKRYFVSVNHGLIQEVRN-DSGEYEVLLTPGELTGLEDILKDLAKEDEYAFRRAFVPYKS 70
           KK Y++S+ +G I +V+  D+  +E+     E+T L +       ED  +F R+ VP+  
Sbjct: 4   KKTYYISIGNGQISQVKTADTYNFEISANDEEITELREHFDQAYVEDLGSFVRSHVPFVE 63

Query: 71  ADHDEAIDQFDDQTIRLFQYLHRYGSEETRQQIEKLNVLPKL 112
             HD   D++D+Q  + ++ ++  G+ ET++ + ++ ++  L
Sbjct: 64  YHHDSNNDRYDEQLQKAYKMIYDLGNHETKELVAQMGIINGL 105


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 203,567,326
Number of extensions: 7931456
Number of successful extensions: 15904
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 15904
Number of HSP's successfully gapped: 4
Length of query: 130
Length of database: 757,237,578
Length adjustment: 93
Effective length of query: 37
Effective length of database: 504,733,371
Effective search space: 18675134727
Effective search space used: 18675134727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)