BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0018.p (85 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_353881.1| AGR_C_1570p [Agrobacterium tumefaciens] >gi|179... 121 5e-27 ref|NP_631745.1| conserved hypothetical protein [Streptomyces co... 116 2e-25 ref|NP_435416.1| hypothetical protein SMa0314 [Sinorhizobium mel... 114 6e-25 ref|ZP_00086956.1| hypothetical protein [Pseudomonas fluorescens... 111 5e-24 ref|NP_355796.1| AGR_L_42p [Agrobacterium tumefaciens] >gi|17938... 103 1e-21 >ref|NP_353881.1| AGR_C_1570p [Agrobacterium tumefaciens] ref|NP_531557.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||A97464 hypothetical protein AGR_C_1570 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AC2682 conserved hypothetical protein Atu0859 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK86666.1| AGR_C_1570p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL41873.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 116 Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 55/77 (71%), Positives = 61/77 (79%) Query: 6 NKPYVGMWVTADDYIRHELLTNGRYDEARGNRKSAYTGSYTITGNHIDYVDDTGFTADGE 65 N PYVGMWVT D +IR ELL NGRYDEARG RKSAY G Y + GNHIDY DDTGFTADGE Sbjct: 40 NHPYVGMWVTGDGHIRQELLPNGRYDEARGKRKSAYQGRYEVKGNHIDYWDDTGFTADGE 99 Query: 66 FRDGILYHAGMILFRES 82 F D +L+H GMI +R+ Sbjct: 100 FVDDVLHHGGMIFYRQK 116 >ref|NP_631745.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] emb|CAC44563.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 94 Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 52/78 (66%), Positives = 65/78 (83%) Query: 6 NKPYVGMWVTADDYIRHELLTNGRYDEARGNRKSAYTGSYTITGNHIDYVDDTGFTADGE 65 N VG WVTAD +IR ELL +GRYDEARG+R+SAYTG YT+TG+H+DYVDDTGFTA G+ Sbjct: 13 NADVVGTWVTADGHIRQELLPDGRYDEARGDRRSAYTGRYTVTGDHLDYVDDTGFTATGD 72 Query: 66 FRDGILYHAGMILFRESK 83 RDG+L+H ++L+RE K Sbjct: 73 LRDGVLHHEHLVLYREEK 90 >ref|NP_435416.1| hypothetical protein SMa0314 [Sinorhizobium meliloti 1021] pir||B95283 hypothetical protein SMa0314 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymA gb|AAK64828.1| hypothetical protein [Sinorhizobium meliloti] Length = 83 Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 51/77 (66%), Positives = 64/77 (83%) Query: 6 NKPYVGMWVTADDYIRHELLTNGRYDEARGNRKSAYTGSYTITGNHIDYVDDTGFTADGE 65 + PYVGMW T D IRH+LL NGRYDEARG+R+SAY G Y ++GNHI+Y DDTGFTADG+ Sbjct: 7 SHPYVGMWETTDGRIRHQLLPNGRYDEARGSRESAYRGRYEVSGNHIEYWDDTGFTADGD 66 Query: 66 FRDGILYHAGMILFRES 82 F D +L+HAGM+L+R+ Sbjct: 67 FVDDVLHHAGMVLYRKQ 83 >ref|ZP_00086956.1| hypothetical protein [Pseudomonas fluorescens PfO-1] Length = 86 Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 52/80 (65%), Positives = 60/80 (75%) Query: 2 NSGNNKPYVGMWVTADDYIRHELLTNGRYDEARGNRKSAYTGSYTITGNHIDYVDDTGFT 61 + + Y GMWVTAD +IRHELLT GRYDEARG KSAY G Y + G++I Y DDTGFT Sbjct: 7 KTTQDHRYAGMWVTADGFIRHELLTTGRYDEARGKNKSAYQGRYELVGDYIQYWDDTGFT 66 Query: 62 ADGEFRDGILYHAGMILFRE 81 ADG F D +LYHAGMIL R+ Sbjct: 67 ADGHFHDDVLYHAGMILHRQ 86 >ref|NP_355796.1| AGR_L_42p [Agrobacterium tumefaciens] ref|NP_535344.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||C98132 hypothetical protein AGR_L_42 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AF3155 conserved hypothetical protein Atu4866 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK88581.1| AGR_L_42p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45660.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 79 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/76 (67%), Positives = 57/76 (75%), Gaps = 1/76 (1%) Query: 8 PYVGMWVTADDYIRHELLTNGRYDEARGNRKSAYTGSYTITGNHIDYVDDTGFTADGEFR 67 PYVG+WVTAD IR ELL NGRYDEARGNRKSAY G Y + G HI+Y DDTGFTADG+F Sbjct: 4 PYVGIWVTADGRIRQELLPNGRYDEARGNRKSAYQGRYEVRGAHINYWDDTGFTADGDFV 63 Query: 68 DG-ILYHAGMILFRES 82 L+H GM +RE Sbjct: 64 SANELHHGGMTFYREK 79 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 152,726,639 Number of extensions: 6230800 Number of successful extensions: 10189 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 10188 Number of HSP's successfully gapped: 7 Length of query: 85 Length of database: 757,237,578 Length adjustment: 54 Effective length of query: 31 Effective length of database: 610,622,232 Effective search space: 18929289192 Effective search space used: 18929289192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)