BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0012.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_345914.1| amino acid ABC transporter, ATP-binding protein... 338 6e-92 ref|NP_720904.1| putative amino acid ABC transporter, ATP-bindin... 333 2e-90 ref|NP_269701.1| putative amino acid ABC transport system (ATP-b... 332 4e-90 ref|NP_801727.1| putative amino acid ABC transport system (ATP-b... 332 4e-90 ref|NP_687327.1| amino acid ABC transporter, ATP-binding protein... 332 4e-90 >ref|NP_345914.1| amino acid ABC transporter, ATP-binding protein [Streptococcus pneumoniae TIGR4] ref|NP_358907.1| ABC transporter ATP-binding protein - aspartate/glutamate transport [Streptococcus pneumoniae R6] pir||A95170 amino acid ABC transporter, ATP-binding protein SP1460 [imported] - Streptococcus pneumoniae (strain TIGR4) pir||A98036 hypothetical protein ABC-NDB [imported] - Streptococcus pneumoniae (strain R6) gb|AAK75554.1| amino acid ABC transporter, ATP-binding protein [Streptococcus pneumoniae TIGR4] gb|AAL00118.1| ABC transporter ATP-binding protein - aspartate/glutamate transport [Streptococcus pneumoniae R6] Length = 247 Score = 338 bits (867), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 205/245 (83%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI++S+LSKSF G +LD + ++I+KG+VVALIGSSGAGKSTFLR+LN LE D G + + Sbjct: 1 MIKISNLSKSFSGQTVLDHLDLDIQKGEVVALIGSSGAGKSTFLRSLNYLETPDSGSIQI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 +GF +DFS IT ++ L LR++ +MVFQ FNLF+ RTALDNVKEGL +VKK++D+EA++IA Sbjct: 61 DGFSVDFSKITQEEILALRRKLSMVFQQFNLFERRTALDNVKEGLVVVKKLSDQEATKIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 KE+L +VGLS+R ++YP+HLSGGQ+QRV +ARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 KEELAKVGLSDRENHYPRHLSGGQKQRVALARALAMKPDVLLLDEPTSALDPELVGEVEK 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A +GQTMILVSH+MSFV +VA+K+LFLDKGKI+E GTPDE+ + PK R KEF Sbjct: 181 SIADAAKSGQTMILVSHDMSFVAQVADKILFLDKGKIIESGTPDEIIHTPKEERTKEFFA 240 Query: 248 NYFRN 252 +Y R Sbjct: 241 SYKRT 245 >ref|NP_720904.1| putative amino acid ABC transporter, ATP-binding protein [Streptococcus mutans UA159] gb|AAN58210.1| putative amino acid ABC transporter, ATP-binding protein [Streptococcus mutans UA159] Length = 247 Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 155/242 (64%), Positives = 207/242 (85%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MIR+S+L+K F G +LD ++++IEKG+VVAL+G+SGAGKSTFLR++N LE+ D G +++ Sbjct: 1 MIRISNLTKEFSGQKVLDGLNLDIEKGEVVALVGASGAGKSTFLRSMNYLEQPDSGSIEI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 + FKI+F TI+ ++ L LR++ AMVFQ FNLF+ RTALDNVKEGLKIVKK+ D EA++IA Sbjct: 61 DDFKINFDTISKEEILTLRRKLAMVFQQFNLFERRTALDNVKEGLKIVKKLPDDEATKIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 KE+L +VGLS+R ++YP+HLSGGQ+QRV +ARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 KEELAKVGLSDRENHYPRHLSGGQKQRVALARALAMKPDVLLLDEPTSALDPELVGEVEK 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A +GQTM+LVSH+MSFV +VA+KVLFL+KG I+E+GTPD++FNHP+ R +EF Sbjct: 181 SIADAAKSGQTMVLVSHDMSFVRQVADKVLFLEKGHILEQGTPDQLFNHPQEKRTEEFFA 240 Query: 248 NY 249 +Y Sbjct: 241 SY 242 >ref|NP_269701.1| putative amino acid ABC transport system (ATP-binding protein) [Streptococcus pyogenes] ref|NP_607713.1| putative amino acid ABC transport system (ATP-binding protein) [Streptococcus pyogenes MGAS8232] gb|AAK34422.1| putative amino acid ABC transport system (ATP-binding protein) [Streptococcus pyogenes M1 GAS] gb|AAL98212.1| putative amino acid ABC transport system (ATP-binding protein) [Streptococcus pyogenes MGAS8232] Length = 247 Score = 332 bits (852), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 152/242 (62%), Positives = 204/242 (84%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI + +LSK+F G +LD ++++IEKG V+AL+G+SGAGKSTFLR+LN LEK D G + + Sbjct: 1 MITIRNLSKTFSGQKVLDSLALDIEKGQVIALVGASGAGKSTFLRSLNYLEKPDSGSISI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 F +DF TIT +Q L LR++ AMVFQ FNLF+ RTAL+NVKEGLK+VKK++D+EA+++A Sbjct: 61 GDFTVDFETITTEQVLILRRKLAMVFQQFNLFERRTALENVKEGLKVVKKLSDQEATKLA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 + +L +VGL++R H+YP+HLSGGQ+QRV +ARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 QAELAKVGLADRKHHYPRHLSGGQKQRVALARALAMKPDVLLLDEPTSALDPELVGEVEK 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A +GQTM+LVSH+M+FVY+VA++VLFLD+GKI+E+GTP+EVF HP+ R KEF Sbjct: 181 SITDAAKSGQTMVLVSHDMNFVYQVADRVLFLDQGKILEQGTPEEVFRHPQKERTKEFFA 240 Query: 248 NY 249 +Y Sbjct: 241 SY 242 >ref|NP_801727.1| putative amino acid ABC transport system (ATP-binding protein) [Streptococcus pyogenes SSI-1] dbj|BAC63560.1| putative amino acid ABC transport system (ATP-binding protein) [Streptococcus pyogenes SSI-1] Length = 248 Score = 332 bits (852), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 151/243 (62%), Positives = 205/243 (84%) Query: 7 LMIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLD 66 +MI + +LSK+F G +LD ++++IEKG V+AL+G+SGAGKSTFLR+LN LEK D G + Sbjct: 1 MMITIRNLSKTFSGQKVLDSLALDIEKGQVIALVGASGAGKSTFLRSLNYLEKPDSGSIS 60 Query: 67 LEGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQI 126 + F +DF TIT +Q L LR++ AMVFQ FNLF+ RTAL+N+KEGLK+VKK++D+EA+++ Sbjct: 61 IGDFTVDFETITTEQVLILRRKLAMVFQQFNLFERRTALENIKEGLKVVKKLSDQEATKL 120 Query: 127 AKEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVL 186 A+ +L +VGL++R H+YP+HLSGGQ+QRV +ARALAMKP +LLLDEPTSALDPELVGEV Sbjct: 121 AQAELTKVGLADRKHHYPRHLSGGQKQRVALARALAMKPDVLLLDEPTSALDPELVGEVE 180 Query: 187 QTIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFL 246 ++I A +GQTM+LVSH+M+FVY+VA++VLFLD+GKI+E+GTP+EVF HP+ R KEF Sbjct: 181 KSITDAAKSGQTMVLVSHDMNFVYQVADRVLFLDQGKILEQGTPEEVFRHPQKERTKEFF 240 Query: 247 QNY 249 +Y Sbjct: 241 ASY 243 >ref|NP_687327.1| amino acid ABC transporter, ATP-binding protein [Streptococcus agalactiae 2603V/R] ref|NP_734751.1| unknown [Streptococcus agalactiae NEM316] gb|AAM99199.1| amino acid ABC transporter, ATP-binding protein [Streptococcus agalactiae 2603V/R] emb|CAD45927.1| unknown [Streptococcus agalactiae NEM316] Length = 247 Score = 332 bits (852), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 155/247 (62%), Positives = 205/247 (82%), Gaps = 2/247 (0%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI++ L+KSF G +LD + ++IEKG VVAL+G+SGAGKSTFLR++N LE+ D G +++ Sbjct: 1 MIKLRQLTKSFSGQKVLDKLDLDIEKGQVVALVGASGAGKSTFLRSMNYLEEPDYGTIEI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 + FK+DF +I+ L LR++ AMVFQ FNLF+ RTALDNVKEGLKIVKKM+D+EA++IA Sbjct: 61 DDFKVDFKSISKDDILTLRRKLAMVFQQFNLFERRTALDNVKEGLKIVKKMSDQEATRIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 +++L +VGL++R YYP+HLSGGQ+QRV +ARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 RDELAKVGLADREKYYPRHLSGGQKQRVALARALAMKPDVLLLDEPTSALDPELVGEVEK 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A GQTM+LVSH+M+FVY+VA+KVLFL+KG+I+E GTP+++FNHP R KEF Sbjct: 181 SIADAAKQGQTMVLVSHDMNFVYQVADKVLFLEKGRILESGTPEQLFNHPLEERTKEFFA 240 Query: 248 NYFRNKS 254 +Y NKS Sbjct: 241 SY--NKS 245 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 352,323,285 Number of extensions: 13646905 Number of successful extensions: 133500 Number of sequences better than 1.0e-05: 22936 Number of HSP's gapped: 99816 Number of HSP's successfully gapped: 24832 Length of query: 257 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 134 Effective length of database: 423,280,401 Effective search space: 56719573734 Effective search space used: 56719573734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)