BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0010.p
         (323 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB51940.1| Putative ABC-type Sugar Transporter [Ruminococcu...   397   e-109
emb|CAA91221.1| integral membrane protein [Thermoanaerobacter br...   219   5e-56
sp|P29823|LACF_AGRRD Lactose transport system permease protein l...   130   4e-29
ref|ZP_00037628.1| COG1175: ABC-type sugar transport systems, pe...   129   1e-28
ref|ZP_00036883.1| COG1175: ABC-type sugar transport systems, pe...   128   2e-28

>emb|CAB51940.1| Putative ABC-type Sugar Transporter [Ruminococcus flavefaciens]
          Length = 330

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/304 (61%), Positives = 248/304 (81%), Gaps = 2/304 (0%)

Query: 2   RRKGVNYSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLI-PKPVHILDNPFQNF 60
           + KG++YSK+GY+F++PF++AFLIF+LYP +YTA +GFT+ +G+  P+  H LD PF+NF
Sbjct: 4   KLKGISYSKYGYLFSIPFIVAFLIFTLYPTIYTATLGFTDCKGVNGPENYHFLDKPFENF 63

Query: 61  KDLLFDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPN 120
           K +L +N +FR SL NT L+WI+NFIPQI +ALLLTAWFT+    I+G+G FKV+ YMPN
Sbjct: 64  KSIL-ENDTFRISLKNTILIWIMNFIPQISIALLLTAWFTSHSNEIRGKGFFKVVFYMPN 122

Query: 121 IITAGTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGN 180
           IITA T+A+LF +LF YP+GPVN   E  G  ++P +F   KT  R IVAFIQFW WYGN
Sbjct: 123 IITAATVAILFHTLFNYPIGPVNDFLESTGLRESPYYFFTSKTACRIIVAFIQFWTWYGN 182

Query: 181 TMIVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDI 240
           TMIVL++GV+GI+P ++E+A IDGANG QTFFRIT+P+L+T+LL+TLITS+VGGL MFDI
Sbjct: 183 TMIVLISGVLGISPDIYEAAEIDGANGVQTFFRITIPNLKTVLLYTLITSLVGGLNMFDI 242

Query: 241 PQLFLAGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILSGLVFYLMRDRD 300
           P LFL GGPD +T TTS+FIY QAF GSY+YN+AAAASMIM+VI A+ S ++F++MRD+D
Sbjct: 243 PFLFLNGGPDRATTTTSVFIYNQAFAGSYLYNKAAAASMIMWVIIALCSAVLFFVMRDKD 302

Query: 301 AGRM 304
             ++
Sbjct: 303 QIKL 306


>emb|CAA91221.1| integral membrane protein [Thermoanaerobacter brockii]
          Length = 303

 Score =  219 bits (559), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 125/300 (41%), Positives = 190/300 (63%), Gaps = 7/300 (2%)

Query: 3   RKGVNYSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNFKD 62
           +  +N + +GYIFTLPF++ FL+F+LYP++YT  +  T+M  L+    H +     NFK 
Sbjct: 9   KSKINKNYYGYIFTLPFIVIFLVFNLYPLIYTFYLSLTDMT-LMNSSYHFVG--LANFKQ 65

Query: 63  LLFDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPNII 122
           L  DN  F KS+INT  +W++NFIPQ+ +A+LL  WF N RL IK  G ++ + Y+PNI+
Sbjct: 66  LFSDNY-FLKSVINTWKIWLINFIPQLTIAMLLAIWFVNNRLKIKFIGLWRTIYYLPNIL 124

Query: 123 TAGTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGNTM 182
               +A LF + F+   GPVN I    G       F +  T  + IVAFIQ+WMWYG T+
Sbjct: 125 MPVAVAALFYNFFSL-YGPVNQIAVRTGILKEAFDFFRSTTWTQLIVAFIQWWMWYGVTI 183

Query: 183 IVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDIPQ 242
           I+L+AG+  I+P+ +ESA +DGAN +Q F +ITLP L+ +L++ L+TS+ GG+ MFDIP 
Sbjct: 184 ILLMAGLSSISPSYYESALVDGANSWQMFTKITLPLLKPVLIYVLVTSLSGGMQMFDIPY 243

Query: 243 LFL--AGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILSGLVFYLMRDRD 300
           L     G PD +  T S+ +Y +   G      AA+  +++F+I AI + ++  L+++R+
Sbjct: 244 LLTDGTGSPDGAIRTMSVLMYMKFSSGDGYIGAAASVGVMIFLITAIAAFIIINLLKERE 303


>sp|P29823|LACF_AGRRD Lactose transport system permease protein lacF
 pir||MMAGCF membrane protein lacF - Agrobacterium radiobacter
 emb|CAA47162.1| lacF [Agrobacterium tumefaciens]
          Length = 298

 Score =  130 bits (327), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 159/297 (53%), Gaps = 15/297 (5%)

Query: 8   YSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNFKDL--LF 65
           Y   G++F  P +    +F LYPIL + V+     +G++ K        F    +L  L+
Sbjct: 13  YDVNGWLFVAPAIALISVFMLYPILRSLVLSLYTGRGMMLK--------FSGTGNLVRLW 64

Query: 66  DNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPNIITAG 125
           ++  F ++L NT + ++V     I +AL+L A   N +L  +  G F+ ++++P + +  
Sbjct: 65  NDPVFWQALQNTVIFFVVQVPIMITMALILAAMLNNPKL--RYSGLFRTMIFLPCVSSLV 122

Query: 126 TIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGNTMIVL 185
             ++LF S+F+   G VN+    +G    PI +L D   A+ ++     W W G  MI  
Sbjct: 123 AYSILFKSMFSLD-GVVNNTLLAIGIIGEPIGWLTDPFWAKVLIIIAITWRWTGYNMIFY 181

Query: 186 VAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDIPQLFL 245
           +A +  I+ +++E+A IDG   +  F  +T+P L+ ++LFT ITS +G L +FD    F 
Sbjct: 182 LAALQNIDRSIYEAAKIDGVPSWGRFAFLTIPMLKPVILFTTITSTIGTLQLFDEVYNFT 241

Query: 246 --AGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILSGLVFYLMRDRD 300
              GGP +STLT S++IY   F+    ++ AA  S ++ ++ A+LS L FY  R+R 
Sbjct: 242 EGTGGPANSTLTLSLYIYNLTFRFMPSFSYAATVSYVIVLMVAVLSFLQFYAARERK 298


>ref|ZP_00037628.1| COG1175: ABC-type sugar transport systems, permease components
           [Enterococcus faecium]
          Length = 332

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 14/294 (4%)

Query: 13  YIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNFKDLLFDNVSFRK 72
           Y+F  PF + FLIF L+P++++ V+ F+   GL       LDN    F  LL D   F  
Sbjct: 50  YVFVSPFYILFLIFGLFPVIFSGVLAFSKWDGLGDIQFVGLDN----FTRLLRD-ADFYL 104

Query: 73  SLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPNIITAGTIAVLFS 132
           S+ NT ++W V   P + LAL+L      K   IK +   K + ++PNI +   + +LF 
Sbjct: 105 SVKNTLIIWAVGTFPMLFLALILAFLVNLKF--IKHKELLKSIFFLPNITSVVAVTILFG 162

Query: 133 SLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGNTMIVLVAGVMGI 192
            +F+   G  N++ + LG+   PI ++      R ++A I  WM+ G  MI+ + G+  I
Sbjct: 163 LIFSNLDGLANALLQFLGFE--PIKWVTSPFWVRIVIALINIWMYLGYNMIIYLTGITKI 220

Query: 193 NPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDIPQLFLAGG--PD 250
               +E+A IDGA   Q F+ IT+P L+ I+LFT++ S +GGL +F   Q+ +  G  P+
Sbjct: 221 PNDYYEAAVIDGATNMQIFWNITIPQLKPIILFTVMMSTIGGLQVFSEAQVLVPQGATPE 280

Query: 251 DSTLTTSMFIYGQAF-KGSYMYNRAAAASMIMFVIAAILSGLVFYLMRDRDAGR 303
              +T   ++Y  AF    Y Y  A A ++++ ++  + S + +YL   R  G 
Sbjct: 281 GGAMTIVYYLYNTAFTNNEYGYGSAVAWALVLIIL--VFSLINWYLTTYRIKGE 332


>ref|ZP_00036883.1| COG1175: ABC-type sugar transport systems, permease components
           [Enterococcus faecium]
          Length = 305

 Score =  128 bits (321), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 11/281 (3%)

Query: 10  KFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNFKDLLFDNVS 69
           +  Y+F  P  L  L+F++ P+L T  I FT++         +    F+NF  +  D  +
Sbjct: 20  RAAYLFLTPSFLVLLLFTVIPLLGTFAISFTDLNIFFTSRNFV---SFENFTRIFSDERA 76

Query: 70  FRKSLINTGLLWIVNFIPQIVLALLLT-AWFTNKRLNIKGQGAFKVLLYMPNIITAGTIA 128
              SLI++    ++    QI++ LL   A   N R N   +  F    Y+P I +  +IA
Sbjct: 77  V-NSLIHSLYFTVLETPTQIIVGLLAAVALSKNTRFNRFCRSTF----YIPVICSLTSIA 131

Query: 129 VLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGNTMIVLVAG 188
           ++FS L    +G +  +F  +G    P FF +D T A   VA +  W  +G TM +L+  
Sbjct: 132 IIFSMLLDPNVGAIPYLFSQVGLP-IPQFF-RDPTLAMPTVAIMTVWKNFGVTMTILLTA 189

Query: 189 VMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDIPQLFLAGG 248
           + GI+P+L+ESA +DGA   Q FF ITLP +   L F ++T+++G + +FD   +  AGG
Sbjct: 190 IQGISPSLYESAQMDGATNRQQFFNITLPQIVPSLGFCILTNLIGSMQVFDQVYVATAGG 249

Query: 249 PDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILS 289
           P   T T   +IY + F   Y    A+A S ++F+I A ++
Sbjct: 250 PQFKTETAVQYIYSRGFTAPYELGYASALSSVLFIIVATIA 290


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.331    0.145    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 443,630,445
Number of extensions: 18650516
Number of successful extensions: 68079
Number of sequences better than 1.0e-05: 1129
Number of HSP's gapped: 67320
Number of HSP's successfully gapped: 1129
Length of query: 323
Length of database: 757,237,578
Length adjustment: 126
Effective length of query: 197
Effective length of database: 415,135,104
Effective search space: 81781615488
Effective search space used: 81781615488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)