BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0004.p (117 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAD51845.1| ArsR [Sinorhizobium sp. As4] 112 3e-24 ref|NP_982167.1| arsenical resistence operon repressor ArsR [Bac... 106 2e-22 ref|NP_243866.1| transcriptional regulator (ArsR family) [Bacill... 106 2e-22 ref|NP_388414.1| similar to transcriptional regulator (ArsR fami... 95 5e-19 ref|NP_693346.1| transcriptional regulator [Oceanobacillus iheye... 87 1e-16 >gb|AAD51845.1| ArsR [Sinorhizobium sp. As4] Length = 115 Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/115 (47%), Positives = 85/115 (73%), Gaps = 4/115 (3%) Query: 1 MEETTVIADMSRIADDLKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKL 60 ME+T + +++R++ LKLLGD+TRL ++S+LK+RE CVCE +E+FD+SQP+ISQHLRKL Sbjct: 1 MEKTVI--ELTRVSQLLKLLGDKTRLTIVSILKQRECCVCELLEVFDMSQPSISQHLRKL 58 Query: 61 RSKGIVKEQKRGQWIHYSLNVEDKPH--IQAVLQLTPDSSTILAVLNKTQVTVCC 113 + G+V+E++RGQWI+YSLN + ++ VL PD + + + K+ T+ C Sbjct: 59 KDLGLVQEERRGQWIYYSLNQASDLYTILEDVLAHVPDQTEKIKQIEKSNPTLRC 113 >ref|NP_982167.1| arsenical resistence operon repressor ArsR [Bacillus cereus ATCC 10987] gb|AAS45010.1| arsenical resistence operon repressor ArsR [Bacillus cereus ATCC 10987] Length = 115 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 82/116 (70%), Gaps = 4/116 (3%) Query: 1 MEETTVIADMSRIADDLKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKL 60 M++T V ++++++ LKLLGD+TRL +++L ER+ CVCE +FD+SQP+ISQHLRKL Sbjct: 1 MQQTVV--ELAQVSGVLKLLGDKTRLTTIAILNERKCCVCELQVVFDMSQPSISQHLRKL 58 Query: 61 RSKGIVKEQKRGQWIHYSLNVEDK--PHIQAVLQLTPDSSTILAVLNKTQVTVCCE 114 + G++KE+++GQWI+YSLN E P I+ +LQ PD + + K T+ C+ Sbjct: 59 KDIGLLKEERQGQWIYYSLNEESSFYPIIKDILQHVPDQKENIQQIEKCNPTLRCK 114 >ref|NP_243866.1| transcriptional regulator (ArsR family) [Bacillus halodurans] pir||H84024 transcription regulator (ArsR family) arsR [imported] - Bacillus halodurans (strain C-125) dbj|BAB06719.1| transcriptional regulator (ArsR family) [Bacillus halodurans] Length = 116 Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 73/100 (73%), Gaps = 2/100 (2%) Query: 17 LKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKLRSKGIVKEQKRGQWIH 76 LKLLGD+TRL M++L+ E E CVCEFVE+F +SQP+ISQHLRKLR G+++E++RGQWI Sbjct: 17 LKLLGDKTRLTMVALMLEDECCVCEFVELFQMSQPSISQHLRKLRDVGLIEEERRGQWIF 76 Query: 77 YSLNVEDKPH--IQAVLQLTPDSSTILAVLNKTQVTVCCE 114 + +N + + + + ++L PD + L L K + VCC+ Sbjct: 77 FRVNKKHEAYDMVASLLNHIPDQTERLRELEKDGLRVCCD 116 >ref|NP_388414.1| similar to transcriptional regulator (ArsR family) [Bacillus subtilis] pir||F69779 transcription regulator ArsR family homolog ydeT - Bacillus subtilis dbj|BAA19367.1| PROBABLE TRANSCRIPTIONAL REGULATOR, SIMILAR TO ARSENICAL RESISTANCE OPERON REPRESSOR. [Bacillus subtilis] emb|CAB12340.1| ydeT [Bacillus subtilis subsp. subtilis str. 168] Length = 111 Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 5/113 (4%) Query: 4 TTVIADMSRIADDLKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKLRSK 63 T +A M+R LK L D+TRL+M+ L E+E+CVC+ V++F++SQPAISQHLRKL++ Sbjct: 2 TIDVAAMTRC---LKTLSDQTRLIMMRLFLEQEYCVCQLVDMFEMSQPAISQHLRKLKNA 58 Query: 64 GIVKEQKRGQWIHYSLN--VEDKPHIQAVLQLTPDSSTILAVLNKTQVTVCCE 114 G V E +RGQW +YS+N + +Q +L +L + + + CC+ Sbjct: 59 GFVNEDRRGQWRYYSINGSCPEFDTLQLILHQIDQEDELLNHIKQKKTQACCQ 111 >ref|NP_693346.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC14381.1| transcriptional regulator (ArsR family) [Oceanobacillus iheyensis HTE831] Length = 115 Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 67/100 (67%), Gaps = 5/100 (5%) Query: 17 LKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKLRSKGIVKEQKRGQWIH 76 L+++ D TRLLM L+ + +CVCEFVE+F+++QPAISQH+RKL+ ++ E ++GQW + Sbjct: 17 LRIMSDPTRLLMAYFLQSKTYCVCEFVEMFEMTQPAISQHIRKLKRMDLITETRKGQWRY 76 Query: 77 YSLNVEDKPHIQAVLQ----LTPDSSTILAVLNKTQVTVC 112 +++N + P+ V Q + P+ + + ++L K + C Sbjct: 77 FTIN-DQSPYYSLVQQILNTINPEDTKVKSILLKEKPMEC 115 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 151,421,457 Number of extensions: 4990180 Number of successful extensions: 13806 Number of sequences better than 1.0e-05: 187 Number of HSP's gapped: 13839 Number of HSP's successfully gapped: 187 Length of query: 117 Length of database: 757,237,578 Length adjustment: 82 Effective length of query: 35 Effective length of database: 534,599,460 Effective search space: 18710981100 Effective search space used: 18710981100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 120 (50.8 bits)