BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0103.p (153 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240966.1| transcriptional repressor of class III stress g... 172 2e-42 ref|NP_691011.1| transcriptional repressor of class III stress g... 164 6e-40 ref|NP_654027.1| hypothetical protein predicted by GeneMark [Bac... 162 2e-39 ref|NP_829980.1| Transcriptional regulator ctsR [Bacillus cereus... 162 3e-39 ref|NP_387964.1| transcriptional regulator [Bacillus subtilis] >... 161 4e-39 >ref|NP_240966.1| transcriptional repressor of class III stress genes [Bacillus halodurans] pir||D83662 transcription repressor of class III stress genes ctsR [imported] - Bacillus halodurans (strain C-125) dbj|BAA90846.1| CtsR [Bacillus halodurans] dbj|BAB03819.1| transcriptional repressor of class III stress genes [Bacillus halodurans] Length = 156 Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/150 (57%), Positives = 113/150 (75%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 MRNISDIIEQYLKNI+ +S + +EI+R++LA+QF CVPSQINYVISTRFT+EKGY+VES Sbjct: 1 MRNISDIIEQYLKNIILQSEKELIEIKRSELAEQFQCVPSQINYVISTRFTIEKGYLVES 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRI + + +N++L+ L IGK I Q AEG+I +L E ++KRE LM Sbjct: 61 KRGGGGYIRIMKAKPHENLSLFDQLAQLIGKGISQQGAEGIISRLFEEGVISKRETRLML 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISL 150 + + R + +RDEIRA L+KAM+ +L Sbjct: 121 SVMDRAHYHTTVNHRDEIRANLLKAMIETL 150 >ref|NP_691011.1| transcriptional repressor of class III stress genes [Oceanobacillus iheyensis HTE831] dbj|BAC12046.1| transcriptional repressor of class III stress genes [Oceanobacillus iheyensis HTE831] Length = 155 Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 81/150 (54%), Positives = 105/150 (70%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 M NISDIIEQYLK +L + +EI+R+++ADQF CVPSQINYVI+TRFT+EKGY+VES Sbjct: 1 MSNISDIIEQYLKKVLQSQGKDVIEIKRSEIADQFQCVPSQINYVINTRFTIEKGYIVES 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRI R + L + IG I Q SA ++ +L E +T+REA LM Sbjct: 61 KRGGGGYIRIMRIQHQSQSVLIDEIIQLIGDSIPQRSAIDILERLLEEDLVTEREAKLMV 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISL 150 +A+ R L LP RDEIRA+++ +ML +L Sbjct: 121 SAIDRTTLAFQLPIRDEIRARILISMLTTL 150 >ref|NP_654027.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_842646.1| transcriptional regulator CtsR [Bacillus anthracis str. Ames] ref|NP_976406.1| transcriptional regulator CtsR [Bacillus cereus ATCC 10987] gb|AAP24132.1| transcriptional regulator CtsR [Bacillus anthracis str. Ames] gb|AAS39014.1| transcriptional regulator CtsR [Bacillus cereus ATCC 10987] Length = 153 Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/150 (52%), Positives = 110/150 (73%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 MRNISDIIEQYLK ++ S +EI+RN++AD+F CVPSQINYVI+TRFTLE+G+VVES Sbjct: 1 MRNISDIIEQYLKQVIDLSNNNVIEIKRNEIADRFECVPSQINYVINTRFTLERGFVVES 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRI + +L ++ + + I + Q +AE +I +L E +T REA LM Sbjct: 61 KRGGGGYIRIIKVKLHDDIDIIDQMLHMIDHSVAQGNAESMIIRLIEEGIITNREAKLML 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISL 150 + + R L++++P RDE+RA+++ AML +L Sbjct: 121 SVLDRSVLSMDVPSRDELRARILCAMLRTL 150 >ref|NP_829980.1| Transcriptional regulator ctsR [Bacillus cereus ATCC 14579] gb|AAP07181.1| Transcriptional regulator ctsR [Bacillus cereus ATCC 14579] Length = 153 Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 78/150 (52%), Positives = 110/150 (73%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 MRNISDIIEQYLK ++ S +EI+RN++AD+F CVPSQINYVI+TRFTLE+G+VVES Sbjct: 1 MRNISDIIEQYLKQVIDLSNNNVIEIKRNEIADRFECVPSQINYVINTRFTLERGFVVES 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRI + +L ++ + + I + Q +AE +I +L E +T REA LM Sbjct: 61 KRGGGGYIRIIKVKLHDDIDIIDQMLHMIDHSVAQGNAESMIIRLLEEGIITGREAKLML 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISL 150 + + R L++++P RDE+RA+++ AML +L Sbjct: 121 SVLDRSVLSMDIPSRDELRARILCAMLRTL 150 >ref|NP_387964.1| transcriptional regulator [Bacillus subtilis] sp|P37568|CTSR_BACSU Transcriptional regulator ctsR pir||S66112 transcription repressor ctsR - Bacillus subtilis dbj|BAA05317.1| unknown [Bacillus subtilis] emb|CAB11859.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 154 Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 76/148 (51%), Positives = 112/148 (75%) Query: 3 NISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVESKR 62 NISDIIEQYLK +L ++ + +EI+R+++AD+F CVPSQINYVI+TRFT E+GY+VESKR Sbjct: 4 NISDIIEQYLKRVLDQNGKEILEIKRSEIADKFQCVPSQINYVINTRFTSERGYIVESKR 63 Query: 63 GGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMRAA 122 GGGGYIRI + ++ V L ++ S I + Q +++ +I +L E + +++REA +M + Sbjct: 64 GGGGYIRIIKIKMNNEVVLINNIISQINTHLSQAASDDIILRLLEDKVISEREAKMMVSV 123 Query: 123 VSRECLTVNLPYRDEIRAKLMKAMLISL 150 + R L ++LP RDE+RA++MKAML SL Sbjct: 124 MDRSVLHIDLPERDELRARMMKAMLTSL 151 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 203,492,594 Number of extensions: 7523096 Number of successful extensions: 16643 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 16621 Number of HSP's successfully gapped: 31 Length of query: 153 Length of database: 757,237,578 Length adjustment: 112 Effective length of query: 41 Effective length of database: 453,146,490 Effective search space: 18579006090 Effective search space used: 18579006090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)