BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0100.p (822 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240969.1| class III stress response-related ATPase [Bacil... 1273 0.0 ref|NP_387967.1| class III stress response-related ATPase [Bacil... 1260 0.0 ref|NP_691014.1| ATP-dependent Clp protease [Oceanobacillus ihey... 1259 0.0 ref|NP_829983.1| Negative regulator of genetic competence clpC/m... 1246 0.0 ref|NP_654030.1| Clp_N, Clp amino terminal domain [Bacillus anth... 1240 0.0 >ref|NP_240969.1| class III stress response-related ATPase [Bacillus halodurans] pir||G83662 class III stress response-related ATPase clpC [imported] - Bacillus halodurans (strain C-125) dbj|BAB03822.1| class III stress response-related ATPase [Bacillus halodurans] Length = 813 Score = 1273 bits (3295), Expect = 0.0, Method: Compositional matrix adjust. Identities = 628/810 (77%), Positives = 702/810 (86%), Gaps = 3/810 (0%) Query: 1 MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDXXXXXXXXXXXXXXXXX 60 MMFGRFTERAQKVLALAQEEA+RLGHNNIGTEHILLGLIREG+ Sbjct: 1 MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREGEGIAAKALQALGLGPEKI 60 Query: 61 QDEVETLIGRGQEQPTNIAYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVA 120 Q EVETLIG+GQ+ I YTPRAKKVIELSMDEARKLGH+YVGTEHILLGLIREGEGVA Sbjct: 61 QKEVETLIGKGQDGAKTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVA 120 Query: 121 ARVLNNLGISLNKARQQVLQLLGSSEATSS--HSGTPANVSTPTLDGLARDLTAYAKDGN 178 ARVLNNLG+SLNKARQQVLQLLGS+E +SS G AN +TPTLD LARDLTA A++ Sbjct: 121 ARVLNNLGVSLNKARQQVLQLLGSNETSSSSQQGGGAANANTPTLDSLARDLTAIAREEG 180 Query: 179 LDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQKIINNEIPETLRDKR 238 LDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ II+NE+PETLR+KR Sbjct: 181 LDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIIHNEVPETLRNKR 240 Query: 239 VMTLDMGSVVAGTKYRGEFEDRLKKIMDEIRQAGNIVLFIDELHTLXXXXXXXXXXXXSN 298 VMTLDMG+VVAGTKYRGEFEDRLKK+MDEIRQAGN++LFIDELHTL SN Sbjct: 241 VMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASN 300 Query: 299 ILKPALARGELQCIGATTLDEYRKYIEKDAALERRFQPITVDQPSPEEAVQILYGLRDRY 358 ILKP+LARGELQCIGATTLDEYRKYIEKDAALERRFQPI V++PS +E++QIL GLRDRY Sbjct: 301 ILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVNEPSLDESIQILKGLRDRY 360 Query: 359 EAHHRVKITDEAIVEAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLNSYTIPPNLKELEM 418 EAHHRV ITDEAI EAVKLSDRYI DRFLPDKAIDLIDEA SKVRL SYT PPNLKELE Sbjct: 361 EAHHRVTITDEAIEEAVKLSDRYIQDRFLPDKAIDLIDEAASKVRLRSYTAPPNLKELEQ 420 Query: 419 RLDDIRKEKDSAVQSQEFEKAAALRDTEQKIREELDTTKNQWKEKQGRTDSQVTPEDIAQ 478 +L++ RKEKD+AVQSQEFEKAA+LRD+EQ+IREELD KN WK+KQG+ ++QV +DIAQ Sbjct: 421 KLEETRKEKDAAVQSQEFEKAASLRDSEQRIREELDQMKNDWKQKQGQENTQVVVDDIAQ 480 Query: 479 VVASWTGIPVSKLKEEETDRLLNMEALLHERVIGQDEAVKAVSRALRRARAGLKDPKRPM 538 VVASWTGIPVSKL EEET+RLL ME +LH+RVIGQ+EAVKA+S+A+RRARAGLKDPKRP+ Sbjct: 481 VVASWTGIPVSKLAEEETERLLKMEEILHKRVIGQEEAVKAISKAVRRARAGLKDPKRPI 540 Query: 539 GSFIFLGPTGVGKTELARALAEAMFGDENAVVRIDMSEYMEKHSTSRLVGAPPGYVGYEE 598 GSFIFLGPTGVGKTELARA+AE +FGDE+A +RIDMSEYMEKH+TSRLVG+PPGYVG++E Sbjct: 541 GSFIFLGPTGVGKTELARAVAETLFGDEDAFIRIDMSEYMEKHATSRLVGSPPGYVGHDE 600 Query: 599 GGQLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTLIILTS 658 GGQLTEKVRRKPYSV+LLDEIEKAHPEVFNILLQVLEDGRLTDSKGR VDFRNT +I+TS Sbjct: 601 GGQLTEKVRRKPYSVILLDEIEKAHPEVFNILLQVLEDGRLTDSKGRTVDFRNTAVIMTS 660 Query: 659 NVGAQAIKKNSTLGFTAVQDAGADYNNMKGKVMEELKKSFRPEFLNRIDEIIVFHSLEEK 718 NVGA ++KN LGFT G++Y +MK KVM ELK SFRPEFLNRIDEIIVFHSLE+K Sbjct: 661 NVGASTLRKNKFLGFT-TDSEGSEYKDMKDKVMTELKNSFRPEFLNRIDEIIVFHSLEKK 719 Query: 719 HIAEIVTLMSDELRKRLREYDVDFMLTDGAKAFLAKEGYDPAFGARPLRRAIQKHIEDRL 778 H+ EI+TLM+D+L+KRL E V F LT+ AK + GYDP +GARPLRRA+Q+ +EDRL Sbjct: 720 HVREIITLMADQLKKRLEEQGVSFELTEAAKDKITDLGYDPEYGARPLRRALQREVEDRL 779 Query: 779 SEELLKGNIKKGDSLKIDEVNGELVVTTVE 808 SEELLKG I+KG ID NGELVV + E Sbjct: 780 SEELLKGTIQKGQRAIIDVENGELVVHSKE 809 >ref|NP_387967.1| class III stress response-related ATPase [Bacillus subtilis] sp|P37571|CLPC_BACSU Negative regulator of genetic competence clpC/mecB pir||I40508 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity] - Bacillus subtilis gb|AAA19233.1| ClpC adenosine triphosphatase dbj|BAA05320.1| clpA/clpB family [Bacillus subtilis] emb|CAB11862.1| class III stress response-related ATPase [Bacillus subtilis subsp. subtilis str. 168] Length = 810 Score = 1260 bits (3261), Expect = 0.0, Method: Compositional matrix adjust. Identities = 626/806 (77%), Positives = 709/806 (87%), Gaps = 1/806 (0%) Query: 1 MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDXXXXXXXXXXXXXXXXX 60 MMFGRFTERAQKVLALAQEEA+RLGHNNIGTEHILLGL+REG+ Sbjct: 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKI 60 Query: 61 QDEVETLIGRGQEQPTNIAYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVA 120 Q EVE+LIGRGQE I YTPRAKKVIELSMDEARKLGH+YVGTEHILLGLIREGEGVA Sbjct: 61 QKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVA 120 Query: 121 ARVLNNLGISLNKARQQVLQLLGSSEATSSHSGTPANVSTPTLDGLARDLTAYAKDGNLD 180 ARVLNNLG+SLNKARQQVLQLLGS+E SS +GT +N +TPTLD LARDLTA AK+ +LD Sbjct: 121 ARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLD 180 Query: 181 PVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQKIINNEIPETLRDKRVM 240 PVIGRSKEI+RVI+VLSRRTKNNPVLIGEPGVGKTAIAEGLAQ+IINNE+PE LRDKRVM Sbjct: 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 Query: 241 TLDMGSVVAGTKYRGEFEDRLKKIMDEIRQAGNIVLFIDELHTLXXXXXXXXXXXXSNIL 300 TLDMG+VVAGTKYRGEFEDRLKK+MDEIRQAGNI+LFIDELHTL SNIL Sbjct: 241 TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNIL 300 Query: 301 KPALARGELQCIGATTLDEYRKYIEKDAALERRFQPITVDQPSPEEAVQILYGLRDRYEA 360 KP+LARGELQCIGATTLDEYRKYIEKDAALERRFQPI VDQPS +E++QIL GLRDRYEA Sbjct: 301 KPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEA 360 Query: 361 HHRVKITDEAIVEAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLNSYTIPPNLKELEMRL 420 HHRV ITD+AI AVKLSDRYISDRFLPDKAIDLIDEAGSKVRL S+T PPNLKELE +L Sbjct: 361 HHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKL 420 Query: 421 DDIRKEKDSAVQSQEFEKAAALRDTEQKIREELDTTKNQWKEKQGRTDSQVTPEDIAQVV 480 D++RKEKD+AVQSQEFEKAA+LRDTEQ++RE+++ TK WKEKQG+ +S+VT +DIA VV Sbjct: 421 DEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV 480 Query: 481 ASWTGIPVSKLKEEETDRLLNMEALLHERVIGQDEAVKAVSRALRRARAGLKDPKRPMGS 540 +SWTG+PVSK+ + ETD+LLNME +LH RVIGQDEAV AV++A+RRARAGLKDPKRP+GS Sbjct: 481 SSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGS 540 Query: 541 FIFLGPTGVGKTELARALAEAMFGDENAVVRIDMSEYMEKHSTSRLVGAPPGYVGYEEGG 600 FIFLGPTGVGKTELARALAE++FGDE +++RIDMSEYMEKHSTSRLVG+PPGYVGY+EGG Sbjct: 541 FIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGG 600 Query: 601 QLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTLIILTSNV 660 QLTEKVRRKPYSVVLLDEIEKAHP+VFNILLQVLEDGRLTDSKGR VDFRNT++I+TSNV Sbjct: 601 QLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 660 Query: 661 GAQAIKKNSTLGFTAVQDAGADYNNMKGKVMEELKKSFRPEFLNRIDEIIVFHSLEEKHI 720 GA +K+N +GF VQD ++ +MK KVM ELK++FRPEF+NRIDEIIVFHSLE+KH+ Sbjct: 661 GASELKRNKYVGFN-VQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL 719 Query: 721 AEIVTLMSDELRKRLREYDVDFMLTDGAKAFLAKEGYDPAFGARPLRRAIQKHIEDRLSE 780 EIV+LMSD+L KRL+E D+ LTD AKA +A+EG D +GARPLRRAIQKH+EDRLSE Sbjct: 720 TEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSE 779 Query: 781 ELLKGNIKKGDSLKIDEVNGELVVTT 806 ELL+GNI KG + +D +GE VV T Sbjct: 780 ELLRGNIHKGQHIVLDVEDGEFVVKT 805 >ref|NP_691014.1| ATP-dependent Clp protease [Oceanobacillus iheyensis HTE831] dbj|BAC12049.1| ATP-dependent Clp protease (ATP-binding subunit) [Oceanobacillus iheyensis HTE831] Length = 809 Score = 1259 bits (3258), Expect = 0.0, Method: Compositional matrix adjust. Identities = 618/808 (76%), Positives = 704/808 (87%), Gaps = 5/808 (0%) Query: 1 MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDXXXXXXXXXXXXXXXXX 60 MMFGRFTERAQKVLAL+QEEAVRLGHNNIGTEHILLGL+REG+ Sbjct: 1 MMFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKI 60 Query: 61 QDEVETLIGRGQEQPTNIAYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVA 120 Q+EVE LIG G++ +I YTPRAKKV+ELS DEARKLGH+YVGTEHILLGLIREGEGVA Sbjct: 61 QEEVEKLIGVGKQPTQSIHYTPRAKKVVELSQDEARKLGHSYVGTEHILLGLIREGEGVA 120 Query: 121 ARVLNNLGISLNKARQQVLQLLGSSEATSSH---SGTPANVSTPTLDGLARDLTAYAKDG 177 ARVLNNLG+SLNKARQQVLQLLGS+E+ + SG +N STPTLD LARDLT AK+G Sbjct: 121 ARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGRSGQQSNASTPTLDSLARDLTVSAKEG 180 Query: 178 NLDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQKIINNEIPETLRDK 237 +DPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTA+AEGLAQ+II+NE+PETLRDK Sbjct: 181 KIDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAVAEGLAQQIIDNEVPETLRDK 240 Query: 238 RVMTLDMGSVVAGTKYRGEFEDRLKKIMDEIRQAGNIVLFIDELHTLXXXXXXXXXXXXS 297 RVMTLDMG+VVAGTKYRGEFEDRLKK+M+EIRQAGNI+LFIDELHTL S Sbjct: 241 RVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQAGNIILFIDELHTLIGAGGAEGAIDAS 300 Query: 298 NILKPALARGELQCIGATTLDEYRKYIEKDAALERRFQPITVDQPSPEEAVQILYGLRDR 357 NILKP+LARGELQCIGATTLDEYRKYIEKDAALERRFQPI VD+P+ EE +QIL GLRDR Sbjct: 301 NILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDEPTLEETIQILNGLRDR 360 Query: 358 YEAHHRVKITDEAIVEAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLNSYTIPPNLKELE 417 YEAHHRV ITDEAI A LSDRYI+DRFLPDKAIDLIDEAGSKVRL SYT+PPNLKELE Sbjct: 361 YEAHHRVTITDEAIEAAASLSDRYITDRFLPDKAIDLIDEAGSKVRLRSYTVPPNLKELE 420 Query: 418 MRLDDIRKEKDSAVQSQEFEKAAALRDTEQKIREELDTTKNQWKEKQGRTDSQVTPEDIA 477 +LD++RKEKD+AVQSQEFEKAA+LRD+EQ+ REEL+TTKNQWKEKQG+TDS+VT EDIA Sbjct: 421 QKLDEVRKEKDAAVQSQEFEKAASLRDSEQRFREELETTKNQWKEKQGQTDSEVTMEDIA 480 Query: 478 QVVASWTGIPVSKLKEEETDRLLNMEALLHERVIGQDEAVKAVSRALRRARAGLKDPKRP 537 VV++WTG+PVSKL ++ETDRLLNME +LH+RVIGQ EAV AV++A+RRARAGLKDPKRP Sbjct: 481 AVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRP 540 Query: 538 MGSFIFLGPTGVGKTELARALAEAMFGDENAVVRIDMSEYMEKHSTSRLVGAPPGYVGYE 597 +GSFIFLGPTGVGKTELARALAE MF DE+A++RIDMSEYME+H+TSRLVG+PPGYVGY+ Sbjct: 541 IGSFIFLGPTGVGKTELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYD 600 Query: 598 EGGQLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTLIILT 657 EGGQLTEKVRRKPYSVVLLDE+EKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNT+II+T Sbjct: 601 EGGQLTEKVRRKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMT 660 Query: 658 SNVGAQAIKKNSTLGFTAVQDAGADYNNMKGKVMEELKKSFRPEFLNRIDEIIVFHSLEE 717 SNVGA +K+N +GF A+ + DY +MK KV+EELKK+FRPEFLNRIDE IVFHSLE+ Sbjct: 661 SNVGASELKRNKYVGF-ALDNEEKDYKDMKSKVIEELKKAFRPEFLNRIDETIVFHSLEK 719 Query: 718 KHIAEIVTLMSDELRKRLREYDVDFMLTDGAKAFLAKEGYDPAFGARPLRRAIQKHIEDR 777 +H+ +IVTLM +L+KRL+E D+ LTD A +A EG+DP +GARPLRR+IQK+IED Sbjct: 720 EHMKDIVTLMVQQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGARPLRRSIQKNIEDL 779 Query: 778 LSEELLKGNIKKGDSLKIDEVN-GELVV 804 LSEELL+G I+K +KI N GE +V Sbjct: 780 LSEELLRGAIEKEQQVKIGLNNKGEFIV 807 >ref|NP_829983.1| Negative regulator of genetic competence clpC/mecB [Bacillus cereus ATCC 14579] gb|AAP07184.1| Negative regulator of genetic competence clpC/mecB [Bacillus cereus ATCC 14579] Length = 811 Score = 1246 bits (3225), Expect = 0.0, Method: Compositional matrix adjust. Identities = 622/805 (77%), Positives = 707/805 (87%), Gaps = 3/805 (0%) Query: 1 MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDXXXXXXXXXXXXXXXXX 60 MMFGRFTERAQKVLAL+QEEA+R+GHNNIGTEHILLGL+REG+ Sbjct: 1 MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKV 60 Query: 61 QDEVETLIGRGQEQPTNIAYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVA 120 Q EVE LIGRG E + YTPRAKKVIELSMDEARKLGH+YVGTEHILLGLIREGEGVA Sbjct: 61 QKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVA 120 Query: 121 ARVLNNLGISLNKARQQVLQLLGSSEATSSHSG-TPANVSTPTLDGLARDLTAYAKDGNL 179 ARVLNNLG+SLNKARQQVLQLLGS+EA+S H G + N +TPTLD LARDLT A++ L Sbjct: 121 ARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSSTNANTPTLDSLARDLTVVARENRL 180 Query: 180 DPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQKIINNEIPETLRDKRV 239 DPVIGRSKEI+RVI+VLSRRTKNNPVLIGEPGVGKTAIAEGLAQ+I+NNE+PETLRDKRV Sbjct: 181 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV 240 Query: 240 MTLDMGSVVAGTKYRGEFEDRLKKIMDEIRQAGNIVLFIDELHTLXXXXXXXXXXXXSNI 299 MTLDMG+VVAGTKYRGEFEDRLKK+MDEIRQAGNI+LFIDELHTL SNI Sbjct: 241 MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNI 300 Query: 300 LKPALARGELQCIGATTLDEYRKYIEKDAALERRFQPITVDQPSPEEAVQILYGLRDRYE 359 LKP+LARGELQCIGATTLDEYRKYIEKDAALERRFQPI VD+PS EE+ QIL GLRDRYE Sbjct: 301 LKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIHVDEPSLEESTQILKGLRDRYE 360 Query: 360 AHHRVKITDEAIVEAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLNSYTIPPNLKELEMR 419 AHHRV ITD+AI AVKLSDRYI+DRFLPDKAIDLIDEA SKVRL SYT PPNLKELE++ Sbjct: 361 AHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAASKVRLRSYTTPPNLKELEVK 420 Query: 420 LDDIRKEKDSAVQSQEFEKAAALRDTEQKIREELDTTKNQWKEKQGRTDSQVTPEDIAQV 479 L++IRKEKD+AVQSQEFEKAA+LRD EQ++RE+L+ TK QWKE+QG+ +S+VT EDIA V Sbjct: 421 LEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV 480 Query: 480 VASWTGIPVSKLKEEETDRLLNMEALLHERVIGQDEAVKAVSRALRRARAGLKDPKRPMG 539 V++WT IPVSKL + ETD+LLN+E++LH+RVIGQDEAV AV++A+RRARAGLKDPKRP+G Sbjct: 481 VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIG 540 Query: 540 SFIFLGPTGVGKTELARALAEAMFGDENAVVRIDMSEYMEKHSTSRLVGAPPGYVGYEEG 599 SFIFLGPTGVGKTELARALAE+MFGDE+A++RIDMSEYMEKHSTSRLVG+PPGYVGYEEG Sbjct: 541 SFIFLGPTGVGKTELARALAESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEG 600 Query: 600 GQLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTLIILTSN 659 GQLTEKVRRKPYSVVLLDE+EKAHP+VFNILLQVLEDGRLTDSKGR VDFRNT++I+TSN Sbjct: 601 GQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIVIMTSN 660 Query: 660 VGAQAIKKNSTLGFTAVQDAGADYNNMKGKVMEELKKSFRPEFLNRIDEIIVFHSLEEKH 719 VGA+A+K+N LGF VQD DY++MKGKVM+ELKK+FRPEFLNRIDEIIVFH LE+KH Sbjct: 661 VGAEALKRNKHLGFN-VQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKH 719 Query: 720 IAEIVTLMSDELRKRLREYDVDFMLTDGAKAFLAKEGYDPAFGARPLRRAIQKHIEDRLS 779 I EIVTLM ++L RL+E +++ LT+GA A +A +G+D +GARPLRRAIQKH+EDRLS Sbjct: 720 IQEIVTLMVNQLVNRLKEQEIELHLTEGAIAAIADKGFDREYGARPLRRAIQKHVEDRLS 779 Query: 780 EELLKGNIKKGDSLKIDEVNGELVV 804 EELLKG I+KG + D V GE V Sbjct: 780 EELLKGAIEKGQKVIFD-VEGETFV 803 >ref|NP_654030.1| Clp_N, Clp amino terminal domain [Bacillus anthracis A2012] ref|NP_842649.1| negative regulator of genetic competence ClpC/MecB [Bacillus anthracis str. Ames] ref|NP_976409.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus ATCC 10987] gb|AAP24135.1| negative regulator of genetic competence ClpC/MecB [Bacillus anthracis str. Ames] gb|AAS39017.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus ATCC 10987] Length = 811 Score = 1240 bits (3209), Expect = 0.0, Method: Compositional matrix adjust. Identities = 619/805 (76%), Positives = 706/805 (87%), Gaps = 3/805 (0%) Query: 1 MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDXXXXXXXXXXXXXXXXX 60 MMFGRFTERAQKVLAL+QEEA+R+GHNNIGTEHILLGL+REG+ Sbjct: 1 MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKV 60 Query: 61 QDEVETLIGRGQEQPTNIAYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVA 120 Q EVE LIGRG E + YTPRAKKVIELSMDEARKLGH+YVGTEHILLGLIREGEGVA Sbjct: 61 QKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVA 120 Query: 121 ARVLNNLGISLNKARQQVLQLLGSSEATSSHSG-TPANVSTPTLDGLARDLTAYAKDGNL 179 ARVLNNLG+SLNKARQQVLQLLGS+EA+S H G + N +TPTLD LARDLT A++ L Sbjct: 121 ARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSSTNANTPTLDSLARDLTVVARENRL 180 Query: 180 DPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQKIINNEIPETLRDKRV 239 DPVIGR KEI+RVI+VLSRRTKNNPVLIGEPGVGKTAIAEGLAQ+I+NNE+PETLRDKRV Sbjct: 181 DPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV 240 Query: 240 MTLDMGSVVAGTKYRGEFEDRLKKIMDEIRQAGNIVLFIDELHTLXXXXXXXXXXXXSNI 299 MTLDMG+VVAGTKYRGEFEDRLKK+MDEIRQAGNI+LFIDELHTL SNI Sbjct: 241 MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNI 300 Query: 300 LKPALARGELQCIGATTLDEYRKYIEKDAALERRFQPITVDQPSPEEAVQILYGLRDRYE 359 LKP+LARGELQCIGATTLDEYRKYIEKDAALERRFQPI VD+PS +E+ QIL GLRDRYE Sbjct: 301 LKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIHVDEPSLDESTQILKGLRDRYE 360 Query: 360 AHHRVKITDEAIVEAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLNSYTIPPNLKELEMR 419 AHHRV ITD+AI AVKLSDRYI+DRFLPDKAIDLIDEA SKVRL SYT PPNLKELE++ Sbjct: 361 AHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAASKVRLRSYTTPPNLKELEVK 420 Query: 420 LDDIRKEKDSAVQSQEFEKAAALRDTEQKIREELDTTKNQWKEKQGRTDSQVTPEDIAQV 479 L++IRKEKD+AVQSQEFEKAA+LRD EQ++RE+L+ TK QWKE+QG+ +S+VT EDIA V Sbjct: 421 LEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV 480 Query: 480 VASWTGIPVSKLKEEETDRLLNMEALLHERVIGQDEAVKAVSRALRRARAGLKDPKRPMG 539 V++WT IPVSKL + ETD+LLN+E++LH+RVIGQDEAV AV++A+RRARAGLKDPKRP+G Sbjct: 481 VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIG 540 Query: 540 SFIFLGPTGVGKTELARALAEAMFGDENAVVRIDMSEYMEKHSTSRLVGAPPGYVGYEEG 599 SFIFLGPTGVGKTELARALAE+MFGDE+A++RIDMSEYMEKHSTSRLVG+PPGYVGYEEG Sbjct: 541 SFIFLGPTGVGKTELARALAESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEG 600 Query: 600 GQLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTLIILTSN 659 GQLTEKVRRKPYSVVLLDE+EKAHP+VFNILLQVLEDGRLTDSKGR VDFRNT++I+TSN Sbjct: 601 GQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIVIMTSN 660 Query: 660 VGAQAIKKNSTLGFTAVQDAGADYNNMKGKVMEELKKSFRPEFLNRIDEIIVFHSLEEKH 719 VGA+A+K+N LGF VQD DY++MKGKVM+ELKK+FRPEFLNRIDEIIVFH LE+KH Sbjct: 661 VGAEALKRNKHLGFN-VQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKH 719 Query: 720 IAEIVTLMSDELRKRLREYDVDFMLTDGAKAFLAKEGYDPAFGARPLRRAIQKHIEDRLS 779 I EIVTLM ++L RL+E +++ LT+GA + +A +G+D +GARPLRRAIQKH+EDRLS Sbjct: 720 IQEIVTLMVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLS 779 Query: 780 EELLKGNIKKGDSLKIDEVNGELVV 804 EELLKG I+KG + D V GE V Sbjct: 780 EELLKGAIEKGQKVIFD-VEGESFV 803 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,124,139,011 Number of extensions: 46591652 Number of successful extensions: 168829 Number of sequences better than 1.0e-05: 1485 Number of HSP's gapped: 166111 Number of HSP's successfully gapped: 1979 Length of query: 822 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 688 Effective length of database: 393,414,312 Effective search space: 270669046656 Effective search space used: 270669046656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)