BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0099.p (455 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240970.1| DNA repair protein [Bacillus halodurans] >gi|17... 650 0.0 ref|NP_387968.1| DNA repair protein homolog [Bacillus subtilis] ... 625 e-178 ref|NP_829984.1| DNA repair protein RadA [Bacillus cereus ATCC 1... 621 e-176 ref|NP_976410.1| DNA repair protein RadA [Bacillus cereus ATCC 1... 621 e-176 ref|NP_691015.1| DNA repair protein [Oceanobacillus iheyensis HT... 620 e-176 >ref|NP_240970.1| DNA repair protein [Bacillus halodurans] sp|Q9KGG1|RADA_BACHD DNA repair protein radA homolog (DNA repair protein sms homolog) pir||H83662 DNA repair protein BH0104 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03823.1| DNA repair protein [Bacillus halodurans] Length = 457 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/455 (69%), Positives = 367/455 (80%), Gaps = 1/455 (0%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEE-TESVVKTQGMTAPIFQSKEKAQS 59 MAK KTKF C ECGYES KW GKCPGCQ+WNSMVEE TE K+ K Q Sbjct: 1 MAKKKTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSGAGIAKPQP 60 Query: 60 IINIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLR 119 I +E ++EPRI T + ELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQ S L R Sbjct: 61 ITKVEREQEPRIDTSMKELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARLADLKQR 120 Query: 120 VLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVFM 179 VLYISGEESV+QTK+R+DRLG LS LYVL ET+ME IE+AI ++ P ++IDSIQTV+ Sbjct: 121 VLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQAIGEVDPTLVIIDSIQTVYQ 180 Query: 180 PEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFE 239 E+TSAPGSV QVRECT FMRIAK G+A +VGHVTK+GAIAGP++LEHMVD VLYFE Sbjct: 181 DEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAIAGPKLLEHMVDSVLYFE 240 Query: 240 GERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVASM 299 GERHHTYR+LRAVKNRFGSTNE+GIFEM E GL EV NPSE+FL +R GVAGS VVASM Sbjct: 241 GERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEDRSSGVAGSTVVASM 300 Query: 300 EGTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAG 359 EGTRPVLVELQAL++ T F +PRRM TG+DH R++L++AVLEKR+GM LQNQDAY+NVAG Sbjct: 301 EGTRPVLVELQALISPTSFGNPRRMATGVDHNRISLLMAVLEKRVGMLLQNQDAYVNVAG 360 Query: 360 GVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLGF 419 GV+LDEPAIDL +AVSIASSFR+ T P++V GE+GLTGEVR VSR + RV EAAKLGF Sbjct: 361 GVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTGEVRRVSRIDQRVNEAAKLGF 420 Query: 420 RRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVAL 454 +RVI+P+K++ GW P I++IGVSTV DAL V L Sbjct: 421 KRVIIPDKNLGGWTIPSTIEVIGVSTVQDALEVTL 455 >ref|NP_387968.1| DNA repair protein homolog [Bacillus subtilis] sp|P37572|RADA_BACSU DNA repair protein radA homolog (DNA repair protein sms homolog) pir||S66116 DNA repair protein sms - Bacillus subtilis dbj|BAA05321.1| unknown [Bacillus subtilis] emb|CAB11863.1| DNA repair protein homolog [Bacillus subtilis subsp. subtilis str. 168] Length = 458 Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust. Identities = 298/456 (65%), Positives = 363/456 (79%), Gaps = 2/456 (0%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEE--TESVVKTQGMTAPIFQSKEKAQ 58 MAK K+KF C CGYESPKW GKCPGC AWN+MVEE ++ + + Q+ +K Sbjct: 1 MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPS 60 Query: 59 SIINIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGL 118 I +IE+ +EPR+ T +GE NRVLGGG+V GSLVL+GGDPGIGKSTLLLQ S L+ Sbjct: 61 PITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSN 120 Query: 119 RVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVF 178 VLYISGEESV+QTKLRADRLG + L+VL ET+ME I AI+++ P F+V+DSIQTV+ Sbjct: 121 SVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSIQTVY 180 Query: 179 MPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYF 238 ++TSAPGSV+QVRECT M+IAK +GI +VGHVTKEG+IAGPR+LEHMVD VLYF Sbjct: 181 QSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF 240 Query: 239 EGERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVAS 298 EGERHHT+R+LRAVKNRFGSTNE+GIFEM E GL EV NPSE+FL ER G AGS++ AS Sbjct: 241 EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITAS 300 Query: 299 MEGTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVA 358 MEGTRP+LVE+QAL++ T F +PRRM TG+DH R++L++AVLEKR+G+ LQNQDAYL VA Sbjct: 301 MEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVA 360 Query: 359 GGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLG 418 GGVKLDEPAIDLA+ +SIASSFRD P D F GEVGLTGEVR VSR E RVKEAAKLG Sbjct: 361 GGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEAAKLG 420 Query: 419 FRRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVAL 454 F+R+I+P ++ GW P+ I++IGV+ VA+AL +L Sbjct: 421 FKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSL 456 >ref|NP_829984.1| DNA repair protein RadA [Bacillus cereus ATCC 14579] gb|AAP07185.1| DNA repair protein RadA [Bacillus cereus ATCC 14579] Length = 458 Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust. Identities = 303/456 (66%), Positives = 362/456 (79%), Gaps = 2/456 (0%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMT-APIFQSK-EKAQ 58 MAK KTKF C ECGY+SPK+ GKCPGC WNS+VEE E VV ++ + A Q++ K + Sbjct: 1 MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNSLVEEMEPVVSSRRLNYANAIQTEVTKPR 60 Query: 59 SIINIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGL 118 + +E+ E RI T E NRVLGGGIV GSLVL+GGDPGIGKSTLLLQ S L Sbjct: 61 RLTEVETKSEARIETKFQEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADASY 120 Query: 119 RVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVF 178 VLYISGEES +Q KLRADRL + L+V+ ET+++ I IE++ P F+VIDSIQT+ Sbjct: 121 DVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIAAHIEEMNPAFVVIDSIQTIH 180 Query: 179 MPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYF 238 +PEVTSAPGSV QVRECT M++AK +GI +VGHVTKEGAIAGPRMLEHMVD VLYF Sbjct: 181 LPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF 240 Query: 239 EGERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVAS 298 EG+RHHTYR+LRAVKNRFGSTNE+GIFEM E+GLAEV NPSE+FL ERP+GVAGS VVAS Sbjct: 241 EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVAS 300 Query: 299 MEGTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVA 358 MEGTRPVLVE+QAL++ T F +PRRM TG+DH R++LI+AVLEKR G+ LQNQDAYL VA Sbjct: 301 MEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVA 360 Query: 359 GGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLG 418 GG+KLDEPAIDLAVA+SIASSFRD ST P D GEVGLTGE+R VSR E RV+EAAKLG Sbjct: 361 GGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEIRRVSRIEQRVQEAAKLG 420 Query: 419 FRRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVAL 454 F+R I+P K++ GW P+ I+++GVS + +AL + L Sbjct: 421 FQRAIIPRKNLGGWTIPEGIEVVGVSNLGEALRLTL 456 >ref|NP_976410.1| DNA repair protein RadA [Bacillus cereus ATCC 10987] gb|AAS39018.1| DNA repair protein RadA [Bacillus cereus ATCC 10987] Length = 458 Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust. Identities = 302/456 (66%), Positives = 361/456 (79%), Gaps = 2/456 (0%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMT-APIFQSK-EKAQ 58 MAK KTKF C ECGY+SPK+ GKCPGC WN++VEE E VV ++ + A Q++ K + Sbjct: 1 MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQTEVTKPR 60 Query: 59 SIINIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGL 118 + +E+ E RI T E NRVLGGGIV GSLVL+GGDPGIGKSTLLLQ S L Sbjct: 61 RLTEVETKSEARIETKFQEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSY 120 Query: 119 RVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVF 178 VLYISGEES +Q KLRADRL + L+V+ ET+++ I IE++ P F+VIDSIQT+ Sbjct: 121 DVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEEVNPAFVVIDSIQTIH 180 Query: 179 MPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYF 238 +PEVTSAPGSV QVRECT M++AK +GI +VGHVTKEGAIAGPRMLEHMVD VLYF Sbjct: 181 LPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF 240 Query: 239 EGERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVAS 298 EG+RHHTYR+LRAVKNRFGSTNE+GIFEM E+GLAEV NPSE+FL ERP+GVAGS VVAS Sbjct: 241 EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVAS 300 Query: 299 MEGTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVA 358 MEGTRPVLVE+QAL++ T F +PRRM TG+DH R++LI+AVLEKR G+ LQNQDAYL VA Sbjct: 301 MEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVA 360 Query: 359 GGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLG 418 GG+KLDEPAIDLAVA+SIASSFRD ST P D GEVGLTGE+R VSR E RV+EAAKLG Sbjct: 361 GGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEIRRVSRIEQRVQEAAKLG 420 Query: 419 FRRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVAL 454 F+R I+P K++ GW P I+++GVS + +AL + L Sbjct: 421 FQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTL 456 >ref|NP_691015.1| DNA repair protein [Oceanobacillus iheyensis HTE831] dbj|BAC12050.1| DNA repair protein [Oceanobacillus iheyensis HTE831] Length = 457 Score = 620 bits (1599), Expect = e-176, Method: Compositional matrix adjust. Identities = 304/455 (66%), Positives = 358/455 (78%), Gaps = 1/455 (0%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEETE-SVVKTQGMTAPIFQSKEKAQS 59 MAK KTKF C ECGYES KW GKCP C WN+MVEE + + VK + A S K + Sbjct: 1 MAKRKTKFVCQECGYESAKWMGKCPACHQWNTMVEEIDPASVKGRTGYATSTTSAGKPEK 60 Query: 60 IINIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLR 119 I IES KEPRI T + E NRVLGGGIV GSLVL+GGDPGIGKSTLLLQ S L + + Sbjct: 61 ITAIESKKEPRITTKMREFNRVLGGGIVLGSLVLIGGDPGIGKSTLLLQISAQLAEKDMS 120 Query: 120 VLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVFM 179 VLY+SGEES RQTKLRADRL + +LYVL ETN+ I + +E+++P F+VIDSIQT+F Sbjct: 121 VLYVSGEESTRQTKLRADRLDITTDQLYVLSETNLYDISKQVEEVKPSFVVIDSIQTIFK 180 Query: 180 PEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFE 239 EVTSAPGSV+QVRECT M+IAK GI +VGHVTKEG+IAGPR+LEHMVD VLYFE Sbjct: 181 EEVTSAPGSVSQVRECTMELMKIAKSNGIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFE 240 Query: 240 GERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVASM 299 GERHHTYR+LR VKNRFGST+E+GIFEM E GL EV NPSE+FL ER G AGS VVASM Sbjct: 241 GERHHTYRILRGVKNRFGSTHEMGIFEMKEEGLREVMNPSEIFLEERSEGAAGSTVVASM 300 Query: 300 EGTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAG 359 EGTR VLVE+QAL++ T F +PRR TG+DH R+ L++AVLEKR+G+ LQNQDAY+ VAG Sbjct: 301 EGTRTVLVEIQALISPTSFGNPRRTATGIDHNRVPLLMAVLEKRVGLMLQNQDAYIKVAG 360 Query: 360 GVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLGF 419 GVKLDEPAIDLA+AVSIASSFRD T P D+F GEVGLTGE+R VSR E RV+EAAKLGF Sbjct: 361 GVKLDEPAIDLALAVSIASSFRDQPTNPNDIFVGEVGLTGEIRRVSRIEQRVQEAAKLGF 420 Query: 420 RRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVAL 454 +RVI P+ ++ GW +P I++IGVS+V +AL + L Sbjct: 421 KRVICPKNNLDGWNYPSGIEVIGVSSVQEALDIGL 455 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 610,292,156 Number of extensions: 23827617 Number of successful extensions: 90917 Number of sequences better than 1.0e-05: 316 Number of HSP's gapped: 90569 Number of HSP's successfully gapped: 321 Length of query: 455 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 326 Effective length of database: 406,989,807 Effective search space: 132678677082 Effective search space used: 132678677082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)