BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0090.p (356 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_976417.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC... 449 e-125 ref|NP_829991.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC... 448 e-125 ref|NP_654038.1| tRNA-synt_1e, tRNA synthetases class I (C) [Bac... 448 e-125 ref|NP_240977.1| cysteinyl-tRNA synthetase [Bacillus halodurans]... 445 e-124 ref|NP_691020.1| cysteinyl-tRNA synthetase [Oceanobacillus iheye... 431 e-119 >ref|NP_976417.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC 10987] gb|AAS39025.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC 10987] Length = 465 Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 250/322 (77%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 M + IYNT+TR KE F+P E KVKMYVCGPTVY Y+HIGNARP +VFD VR YLE G Sbjct: 1 MTIHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +V YV+NFTDVDDKLI+ A E+ V +A+ F+ AY ED+ LG K AT++PRVT++M+ Sbjct: 61 DVQYVSNFTDVDDKLIKAANELGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMD 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 +IIEFI+EL NKGYAYES GDVY+RT +F YGKLS Q + +L+ G R+EV +K+ P D Sbjct: 121 IIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 F LWKAAK GE+ W SPWG+GRPGWHIECSAMAR++LGDTIDIH GGQDL FPHHE E A Sbjct: 181 FALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EALTGK + YWMHNG+INI +EKMSKSLGN +LV DI +++ IR+FMLS HYR+ Sbjct: 241 QSEALTGKTFARYWMHNGYININNEKMSKSLGNFILVHDIIKQYDPQLIRFFMLSVHYRH 300 Query: 326 PLNFTEESMLSAEKSAERIALA 347 P+NF+EE + S ERI A Sbjct: 301 PINFSEELLQSTNNGLERIKTA 322 >ref|NP_829991.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC 14579] sp|Q81J59|SYC_BACCR Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) gb|AAP07192.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC 14579] Length = 465 Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 250/322 (77%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 M + IYNT+TR KE FVP E KVKMYVCGPTVY Y+HIGNARP +VFD VR YLE G Sbjct: 1 MTIHIYNTLTRQKEEFVPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +V YV+NFTDVDDKLI+ A E+ V +A+ F+ AY ED+ LG K AT++PRVT++M+ Sbjct: 61 DVQYVSNFTDVDDKLIKAANELGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMD 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 +IIEFI+EL NKGYAYES GDVY++T +F YGKLS Q + +L+ G R+EV +K+ P D Sbjct: 121 IIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 F LWKAAK GE+ W SPWG+GRPGWHIECSAMAR++LGDTIDIH GGQDL FPHHE E A Sbjct: 181 FALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EALTGK + YWMHNG+INI +EKMSKSLGN +LV DI +++ IR+FMLS HYR+ Sbjct: 241 QSEALTGKTFARYWMHNGYININNEKMSKSLGNFILVHDIIKQYDPQLIRFFMLSVHYRH 300 Query: 326 PLNFTEESMLSAEKSAERIALA 347 P+NF+EE + S ERI A Sbjct: 301 PINFSEELLQSTNNGLERIKTA 322 >ref|NP_654038.1| tRNA-synt_1e, tRNA synthetases class I (C) [Bacillus anthracis A2012] ref|NP_842657.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Ames] sp|Q81VV1|SYC_BACAA Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) gb|AAP24143.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Ames] Length = 465 Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 249/322 (77%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 M + IYNT+TR KE F P E KVKMYVCGPTVY Y+HIGNARP +VFD VR YLE G Sbjct: 1 MTIHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +V YV+NFTDVDDKLI+ A E+ V +A+ F+ AY ED+ LG K AT++PRVT++M+ Sbjct: 61 DVQYVSNFTDVDDKLIKAANELGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMD 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 +IIEFI+EL NKGYAYES GDVY+RT +F YGKLS Q + +L+ G R+EV +K+ P D Sbjct: 121 IIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 F LWKAAK GE+ W SPWG+GRPGWHIECSAMAR++LGDTIDIH GGQDL FPHHE E A Sbjct: 181 FALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EALTGK + YWMHNG+INI +EKMSKSLGN +LV DI +++ IR+FMLS HYR+ Sbjct: 241 QSEALTGKTFARYWMHNGYININNEKMSKSLGNFILVHDIIKQYDPQLIRFFMLSVHYRH 300 Query: 326 PLNFTEESMLSAEKSAERIALA 347 P+NF+EE + S ERI A Sbjct: 301 PINFSEELLQSTNNGLERIKTA 322 >ref|NP_240977.1| cysteinyl-tRNA synthetase [Bacillus halodurans] sp|Q9KGF4|SYC_BACHD Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) pir||G83663 cysteinyl-tRNA synthetase cysS [imported] - Bacillus halodurans (strain C-125) dbj|BAB03830.1| cysteinyl-tRNA synthetase [Bacillus halodurans] Length = 466 Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust. Identities = 202/324 (62%), Positives = 256/324 (79%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 MA+Q++N++TR KE FVP E GKVKMYVCGPTVY Y+HIGNARP IV+DM+R YL+ G Sbjct: 1 MAIQVFNSLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPPIVYDMIRRYLKYRGY 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 EV +V+NFTDVDDK+IR A E+ V VA FI AY++D + LGV A +PRVT++M Sbjct: 61 EVLFVSNFTDVDDKIIRVANELGEDVFAVANRFIEAYKQDTSALGVLEADHHPRVTETMS 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 II FI+ LE KGYAYE GGDVY+RT KF +YGKLS Q++++L G R+EVD RKE P D Sbjct: 121 EIISFIRVLEEKGYAYEQGGDVYFRTRKFKEYGKLSAQSIDDLLSGARIEVDERKEDPLD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 FVLWKAAK GEV W SPWG+GRPGWHIECSAM +++LGDTIDIH GGQDL+FPHHE E A Sbjct: 181 FVLWKAAKEGEVSWDSPWGKGRPGWHIECSAMVKKYLGDTIDIHAGGQDLKFPHHENEIA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+E +TGKP++NYW+HNGFIN+ +EKMSKSLGN +L ++ ++ A +R+FMLS HYR+ Sbjct: 241 QSECMTGKPMANYWLHNGFINLDNEKMSKSLGNVVLANEMIRQHSAEVLRFFMLSAHYRS 300 Query: 326 PLNFTEESMLSAEKSAERIALAES 349 P+NF++E + A++ ER+ A S Sbjct: 301 PINFSDELLEGAKRGLERLQTAVS 324 >ref|NP_691020.1| cysteinyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] sp|Q8ETZ9|SYC_OCEIH Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) dbj|BAC12055.1| cysteinyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] Length = 468 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 198/322 (61%), Positives = 241/322 (74%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 M +QIYNT+TR KE F P E GKVKMYVCGPTVY Y+HIGNARP IVFD VR YLE G Sbjct: 1 MTIQIYNTLTRQKEIFKPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLEYRGF 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +V+YV NFTDVDDK+I+ A+++ V +A+ F+ AY ED+ LGVK AT NPRV +M+ Sbjct: 61 DVDYVLNFTDVDDKIIKTAKDVGEEVPVLADRFVNAYLEDVGALGVKKATKNPRVMDTMD 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 II FI L KGYAYE+ GDVY++ F YGKLS Q+++EL+ G R++V +KE P D Sbjct: 121 DIIAFISALIEKGYAYEADGDVYFKPRSFDTYGKLSHQSIDELRSGARIQVGEKKEDPLD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 F LWK AK E+ W SPWGEGRPGWHIECSAM ++ LGDTIDIH GGQDL FPHHE E A Sbjct: 181 FALWKQAKDDEIAWKSPWGEGRPGWHIECSAMVKKHLGDTIDIHAGGQDLTFPHHENEIA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EA+ G+ +NYWMHNG+INI +EKMSKSLGN +L +D+ Q +R+FMLS HYRN Sbjct: 241 QSEAMNGETFANYWMHNGYINIDNEKMSKSLGNFVLARDLIQAHDPRVLRFFMLSVHYRN 300 Query: 326 PLNFTEESMLSAEKSAERIALA 347 P+NFTE + SA+ S ERI A Sbjct: 301 PINFTEALLESAKTSLERIQTA 322 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 518,574,882 Number of extensions: 22150056 Number of successful extensions: 75633 Number of sequences better than 1.0e-05: 1005 Number of HSP's gapped: 74214 Number of HSP's successfully gapped: 1031 Length of query: 356 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 229 Effective length of database: 412,420,005 Effective search space: 94444181145 Effective search space used: 94444181145 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)