BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0086.p (173 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240980.1| BH0114~unknown conserved protein [Bacillus halo... 145 5e-34 ref|NP_654041.1| hypothetical protein predicted by GeneMark [Bac... 131 7e-30 ref|NP_691023.1| hypothetical protein OB0102 [Oceanobacillus ihe... 130 1e-29 ref|NP_829994.1| hypothetical Cytosolic Protein [Bacillus cereus... 130 1e-29 ref|NP_387978.1| similar to hypothetical proteins [Bacillus subt... 127 1e-28 >ref|NP_240980.1| BH0114~unknown conserved protein [Bacillus halodurans] pir||B83664 hypothetical protein BH0114 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03833.1| BH0114 [Bacillus halodurans] Length = 170 Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 77/170 (45%), Positives = 104/170 (61%), Gaps = 6/170 (3%) Query: 5 RDILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPGL 64 R+IL+VDGYNMIG WP+L EL + ARD+L+D LA+YQA++G +VI VFDA+ VPG+ Sbjct: 2 REILIVDGYNMIGAWPELKELKDRDLALARDKLIDRLAEYQAYTGCKVILVFDAHMVPGV 61 Query: 65 GRSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQGXXXXX 124 GR++ +++V +T++ ETADE IERLV E QIYVATSD EQ IF G Sbjct: 62 GRTYNNHRIEVIYTRKNETADERIERLVRELKRIDTQIYVATSDLAEQSHIFGSGALRKS 121 Query: 125 XXXXXXXXXXXQKQVKKVIEPKNI--SSTRHSLEEKLPPETRRRLEDWRR 172 K ++K +E N +ST+ +L E+L E WRR Sbjct: 122 ARELYNEMEVTGKGIEKTVEKSNKEHNSTKIALTEELAE----IFEKWRR 167 >ref|NP_654041.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_842660.1| conserved hypothetical protein [Bacillus anthracis str. Ames] ref|NP_976420.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAP24146.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAS39028.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 170 Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 61/114 (53%), Positives = 82/114 (71%) Query: 6 DILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPGLG 65 DIL+VDGYN+IG W DL +L +Q +RD L+D +ADYQ ++G +V+ VFDAY V G+ Sbjct: 3 DILIVDGYNIIGAWGDLKKLRDVDLQSSRDALIDKMADYQGYTGTKVMIVFDAYTVHGIE 62 Query: 66 RSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQG 119 + Q +V+V FT++ +TADE IE+L E + QIYVATSD+ EQ VIFAQG Sbjct: 63 KKMKQSRVEVIFTRKNQTADEKIEQLAIELRNINTQIYVATSDYTEQWVIFAQG 116 >ref|NP_691023.1| hypothetical protein OB0102 [Oceanobacillus iheyensis HTE831] dbj|BAC12058.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 169 Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 60/115 (52%), Positives = 83/115 (72%) Query: 5 RDILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPGL 64 +++L+VDGYN+IG W +L L + ARDRL+++LA+YQAF+G VI VFDAY V G+ Sbjct: 2 KEVLIVDGYNVIGAWGELQRLKEKEIGQARDRLIEVLAEYQAFTGKHVILVFDAYYVRGV 61 Query: 65 GRSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQG 119 + +++ +TKEKETADECIE+LV E + + Q+YVATSD+ EQ IF QG Sbjct: 62 ENKQQKFNIEIIYTKEKETADECIEKLVKEVKNIQTQVYVATSDYAEQRTIFGQG 116 >ref|NP_829994.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gb|AAP07195.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] Length = 170 Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 99/167 (59%), Gaps = 2/167 (1%) Query: 6 DILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPGLG 65 DIL+VDGYN+IG W DL +L +Q +RD L+D +ADYQ ++G +V+ VFDAY V G+ Sbjct: 3 DILIVDGYNIIGAWGDLKKLRDVDLQSSRDALIDKMADYQGYTGTKVMIVFDAYTVHGIE 62 Query: 66 RSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQGXXXXXX 125 + Q +V+V FT++ +TADE IE+L E + QIYVATSD+ EQ VIF QG Sbjct: 63 KKMKQSRVEVIFTRKNQTADEKIEQLAIELRNINTQIYVATSDYTEQWVIFGQGALRKSA 122 Query: 126 XXXXXXXXXXQKQVKKVIEPKNISSTRHSLEEKLPPETRRRLEDWRR 172 ++QV++ K+ + ++ + + +LE RR Sbjct: 123 RELELEVQAMEQQVRR--RTKDTKEQQPAMRKIFSKDITEKLEKLRR 167 >ref|NP_387978.1| similar to hypothetical proteins [Bacillus subtilis] sp|P37574|YACP_BACSU Hypothetical protein yacP pir||S66125 conserved hypothetical protein yacP - Bacillus subtilis dbj|BAA05330.1| unknown [Bacillus subtilis] emb|CAB11873.1| yacP [Bacillus subtilis subsp. subtilis str. 168] Length = 170 Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/114 (53%), Positives = 79/114 (69%) Query: 6 DILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPGLG 65 DILLVDGYNMIG WP L +L + + ARD L+ +A+YQ+++G RVI VFDA+ V GL Sbjct: 2 DILLVDGYNMIGAWPQLKDLKANSFEEARDVLIQKMAEYQSYTGNRVIVVFDAHLVKGLE 61 Query: 66 RSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQG 119 + +V+V FTKE ETADE IE+L ++ QI+VATSD+ EQ IF QG Sbjct: 62 KKQTNHRVEVIFTKENETADERIEKLAQALNNIATQIHVATSDYTEQWAIFGQG 115 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 219,406,062 Number of extensions: 7058136 Number of successful extensions: 15911 Number of sequences better than 1.0e-05: 33 Number of HSP's gapped: 15878 Number of HSP's successfully gapped: 33 Length of query: 173 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 56 Effective length of database: 439,570,995 Effective search space: 24615975720 Effective search space used: 24615975720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 121 (51.2 bits)