BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0084.p
         (63 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_240983.1| preprotein translocase subunit [Bacillus halodu...    65   6e-10
ref|NP_691026.1| preprotein translocase subunit [Oceanobacillus ...    59   3e-08
ref|ZP_00042317.1| COG0690: Preprotein translocase subunit SecE ...    52   4e-06
ref|NP_387981.1| preprotein translocase subunit [Bacillus subtil...    52   5e-06
ref|NP_763853.1| preprotein translocase subunit [Staphylococcus ...    52   6e-06

>ref|NP_240983.1| preprotein translocase subunit [Bacillus halodurans]
 sp|Q9KGE8|SECE_BACHD Preprotein translocase secE subunit
 pir||E83664 preprotein translocase subunit secE [imported] - Bacillus
          halodurans (strain C-125)
 dbj|BAB03836.1| preprotein translocase subunit [Bacillus halodurans]
          Length = 64

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6  KSLFSFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIEAII 63
          K +  FF +  +E+K+V WP+RKEL  YTL+VLGT+  I ++F V+D GISA++  +I
Sbjct: 6  KGIGKFFGDVVAEMKRVSWPTRKELTRYTLVVLGTVAFITVFFAVVDYGISALVRGLI 63


>ref|NP_691026.1| preprotein translocase subunit [Oceanobacillus iheyensis HTE831]
 dbj|BAC12061.1| preprotein translocase subunit [Oceanobacillus iheyensis HTE831]
          Length = 57

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 40/54 (74%)

Query: 8  LFSFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIEA 61
          +F F      E+KKV WP  KEL+NYT++V+ T++ +A++F+V+D+GIS ++ A
Sbjct: 1  MFKFLRNVSREMKKVSWPKGKELRNYTVVVISTVIFMAVFFFVVDLGISQLLNA 54


>ref|ZP_00042317.1| COG0690: Preprotein translocase subunit SecE [Magnetococcus sp.
          MC-1]
          Length = 63

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 38/54 (70%)

Query: 10 SFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIEAII 63
          ++  +  SE++KV WPSRKE    T++V G +V ++L+ W++D  +S+ ++AII
Sbjct: 9  AYLGDVRSEMRKVVWPSRKETMQTTIVVFGMVVAVSLFLWLVDAILSSTVQAII 62


>ref|NP_387981.1| preprotein translocase subunit [Bacillus subtilis]
 sp|Q06799|SECE_BACSU Preprotein translocase secE subunit
 pir||S39858 preprotein translocase chain secE - Bacillus subtilis
 dbj|BAA02559.1| E.coli SecE homologous protein [Bacillus subtilis]
 emb|CAB11876.1| preprotein translocase subunit [Bacillus subtilis subsp. subtilis
          str. 168]
          Length = 59

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 8  LFSFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIEAII 63
          +  FF +   E+KKV WP  KEL  YT+ V+ T++   ++F +LD GIS +I  I+
Sbjct: 3  IMKFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFALLDTGISQLIRLIV 58


>ref|NP_763853.1| preprotein translocase subunit [Staphylococcus epidermidis ATCC
          12228]
 sp|Q8CQ86|SECE_STAEP Preprotein translocase secE subunit
 gb|AAO03895.1| preprotein translocase subunit [Staphylococcus epidermidis ATCC
          12228]
          Length = 60

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 36/49 (73%)

Query: 10 SFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAV 58
          SFF    SE++K  WP+++EL  YT+IV+ T++   ++F+ LDIGI+A+
Sbjct: 6  SFFKGVKSEMEKTSWPTKEELFKYTIIVVSTVIFFLVFFYALDIGINAL 54


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.328    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 89,943,878
Number of extensions: 2632505
Number of successful extensions: 13011
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 13012
Number of HSP's successfully gapped: 16
Length of query: 63
Length of database: 757,237,578
Length adjustment: 35
Effective length of query: 28
Effective length of database: 662,209,113
Effective search space: 18541855164
Effective search space used: 18541855164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 120 (50.8 bits)