BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0082.p (141 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_842665.1| ribosomal protein L11 [Bacillus anthracis str. ... 250 8e-66 ref|NP_829998.1| LSU ribosomal protein L11P [Bacillus cereus ATC... 249 1e-65 ref|NP_469625.1| ribosomal protein L11 [Listeria innocua] >gi|16... 249 2e-65 ref|NP_240985.1| 50S ribosomal protein L11; ribosomal protein L1... 248 2e-65 ref|NP_691028.1| 50S ribosomal protein L11 [Oceanobacillus iheye... 247 6e-65 >ref|NP_842665.1| ribosomal protein L11 [Bacillus anthracis str. Ames] ref|NP_976425.1| ribosomal protein L11 [Bacillus cereus ATCC 10987] sp|Q81VU3|RL11_BACAA 50S ribosomal protein L11 gb|AAP24151.1| ribosomal protein L11 [Bacillus anthracis str. Ames] gb|AAS39033.1| ribosomal protein L11 [Bacillus cereus ATCC 10987] Length = 141 Score = 250 bits (638), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 125/141 (88%), Positives = 130/141 (92%) Query: 1 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNARTADQAGLIIPVEITV Sbjct: 1 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEITV 60 Query: 61 FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120 FEDRSFTFITKTPPAAVLL+ A +E GSGEPN+ KVA + R VREIAETKMPDLNAAS Sbjct: 61 FEDRSFTFITKTPPAAVLLKKVAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAAS 120 Query: 121 IEAAMRMVEGTARSMGITIED 141 +EAAMRMVEGTARSMGI IED Sbjct: 121 VEAAMRMVEGTARSMGIVIED 141 >ref|NP_829998.1| LSU ribosomal protein L11P [Bacillus cereus ATCC 14579] sp|Q81J53|RL11_BACCR 50S ribosomal protein L11 gb|AAP07199.1| LSU ribosomal protein L11P [Bacillus cereus ATCC 14579] Length = 141 Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/141 (88%), Positives = 130/141 (92%) Query: 1 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNARTADQAGLIIPVEITV Sbjct: 1 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEITV 60 Query: 61 FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120 FEDRSFTFITKTPPAAVLL+ AA +E GSGEPN+ KVA + R VREIAETKMPDLNAAS Sbjct: 61 FEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAAS 120 Query: 121 IEAAMRMVEGTARSMGITIED 141 +EAAMRMVEG ARSMGI IED Sbjct: 121 VEAAMRMVEGAARSMGIVIED 141 >ref|NP_469625.1| ribosomal protein L11 [Listeria innocua] ref|NP_463779.1| ribosomal protein L11 [Listeria monocytogenes EGD-e] sp|Q92F27|RL11_LISMO 50S ribosomal protein L11 pir||AI1105 ribosomal protein L11 [imported] - Listeria monocytogenes (strain EGD-e) pir||AI1467 ribosomal protein L11 [imported] - Listeria innocua (strain Clip11262) emb|CAD00775.1| ribosomal protein L11 [Listeria monocytogenes] emb|CAC95513.1| ribosomal protein L11 [Listeria innocua] Length = 141 Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/141 (88%), Positives = 132/141 (93%) Query: 1 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60 MAKKVIK VKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNARTADQAGLIIPV ITV Sbjct: 1 MAKKVIKEVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVVITV 60 Query: 61 FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120 FEDRSFTFITKTPPAAVLL+ AAKVEKGSGEPNK KVA + RA V+EIAETKMPDLNAA+ Sbjct: 61 FEDRSFTFITKTPPAAVLLKKAAKVEKGSGEPNKTKVASVTRAQVQEIAETKMPDLNAAN 120 Query: 121 IEAAMRMVEGTARSMGITIED 141 +E+AM MVEGTARSMGITI+D Sbjct: 121 VESAMLMVEGTARSMGITIQD 141 >ref|NP_240985.1| 50S ribosomal protein L11; ribosomal protein L11 (BL11) [Bacillus halodurans] sp|Q9KGE6|RL11_BACHD 50S ribosomal protein L11 pir||G83664 ribosomal protein L11 (BL11) rplK [imported] - Bacillus halodurans (strain C-125) dbj|BAB03838.1| 50S ribosomal protein L11 [Bacillus halodurans] Length = 141 Score = 248 bits (634), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 123/141 (87%), Positives = 130/141 (92%) Query: 1 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNART+DQAGLIIPVEITV Sbjct: 1 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTSDQAGLIIPVEITV 60 Query: 61 FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120 FEDRSFTF+TKTPPAAVLL+ AA +E GSGEPN+ KVA + R VREIAETKMPDLNAA Sbjct: 61 FEDRSFTFVTKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAAD 120 Query: 121 IEAAMRMVEGTARSMGITIED 141 +EAAMRMVEGTARSMGI IED Sbjct: 121 VEAAMRMVEGTARSMGIVIED 141 >ref|NP_691028.1| 50S ribosomal protein L11 [Oceanobacillus iheyensis HTE831] sp|Q8ETZ3|RL11_OCEIH 50S ribosomal protein L11 dbj|BAC12063.1| 50S ribosomal protein L11 [Oceanobacillus iheyensis HTE831] Length = 141 Score = 247 bits (631), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 122/141 (86%), Positives = 130/141 (92%) Query: 1 MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60 MAKKVIK+VKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNART DQAG+IIPVEITV Sbjct: 1 MAKKVIKLVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGMIIPVEITV 60 Query: 61 FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120 FEDRSFTFITKTPPAAVLL+ AA +E GSGEPNK KVA + R V+EIAETKMPDLNAA Sbjct: 61 FEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNKNKVASVKRDQVKEIAETKMPDLNAAD 120 Query: 121 IEAAMRMVEGTARSMGITIED 141 ++AAMRMVEGTARSMGITIED Sbjct: 121 VDAAMRMVEGTARSMGITIED 141 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.131 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 179,170,978 Number of extensions: 6317761 Number of successful extensions: 22168 Number of sequences better than 1.0e-05: 685 Number of HSP's gapped: 21895 Number of HSP's successfully gapped: 685 Length of query: 141 Length of database: 757,237,578 Length adjustment: 102 Effective length of query: 39 Effective length of database: 480,297,480 Effective search space: 18731601720 Effective search space used: 18731601720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)