BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0079.p (120 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691031.1| 50S ribosomal protein L7/L12 [Oceanobacillus ih... 140 1e-32 ref|NP_240988.1| 50S ribosomal protein L7/L12; ribosomal protein... 134 4e-31 sp|P02395|RL7_MICLU 50S ribosomal protein L7/L12 (MA1/MA2) >gi|7... 132 2e-30 sp|P05392|RL7_BACST 50S ribosomal protein L7/L12 (BL13) ('A' typ... 132 3e-30 ref|ZP_00103715.1| COG0222: Ribosomal protein L7/L12 [Desulfitob... 132 3e-30 >ref|NP_691031.1| 50S ribosomal protein L7/L12 [Oceanobacillus iheyensis HTE831] dbj|BAC12066.1| 50S ribosomal protein L7/L12 [Oceanobacillus iheyensis HTE831] Length = 120 Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/120 (65%), Positives = 90/120 (75%) Query: 1 MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXXEQSEFDVILTS 60 M+ E ++ IK MSVLELNDLVKAIEEEF E++EFDV+LTS Sbjct: 1 MTNEEMISAIKEMSVLELNDLVKAIEEEFGVTAAAPVAAAGAAGGAVEEEKTEFDVVLTS 60 Query: 61 AGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAVELK 120 AGASKI V+K VREITGLGLK+AKDLVDNAPKPIKE VSKE+AE V+ KLEEAGA+VE+K Sbjct: 61 AGASKIKVVKAVREITGLGLKDAKDLVDNAPKPIKEGVSKEEAEEVQGKLEEAGASVEVK 120 >ref|NP_240988.1| 50S ribosomal protein L7/L12; ribosomal protein L7/L12 [Bacillus halodurans] sp|Q9KGE3|RL7_BACHD 50S ribosomal protein L7/L12 pir||B83665 ribosomal protein L7/L12 rplL [imported] - Bacillus halodurans (strain C-125) dbj|BAB03841.1| 50S ribosomal protein L7/L12 [Bacillus halodurans] Length = 121 Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/121 (65%), Positives = 90/121 (74%), Gaps = 1/121 (0%) Query: 1 MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXX-EQSEFDVILT 59 MSK+ I+E IK M+VLELNDLVKAIEEEF E++EFDV+L Sbjct: 1 MSKDQIIEAIKEMTVLELNDLVKAIEEEFGVTAAAPVAVAGGAAAEGGAAEKTEFDVVLE 60 Query: 60 SAGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAVEL 119 SAG SKINVIK+VREITGLGLKEAK LVD AP PIKE V+KE+AE +KAKLEEAGA+VEL Sbjct: 61 SAGGSKINVIKVVREITGLGLKEAKALVDGAPAPIKEGVAKEEAEEMKAKLEEAGASVEL 120 Query: 120 K 120 K Sbjct: 121 K 121 >sp|P02395|RL7_MICLU 50S ribosomal protein L7/L12 (MA1/MA2) pir||R7MCML ribosomal protein L7/L12 - Micrococcus luteus Length = 118 Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/120 (63%), Positives = 90/120 (75%), Gaps = 2/120 (1%) Query: 1 MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXXEQSEFDVILTS 60 M+KE ILE IK M+VLELNDLVKAIEEEF E++EFDV+L S Sbjct: 1 MNKEQILEAIKAMTVLELNDLVKAIEEEFGVTAAAPVVAGGAAAAAE--EKTEFDVVLAS 58 Query: 61 AGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAVELK 120 AGA KI VIK+VREITGLGLKEAK++VDNAPK +KE VSK++AE +KAKLEE GA+VE+K Sbjct: 59 AGAEKIKVIKVVREITGLGLKEAKEVVDNAPKALKEGVSKDEAEEIKAKLEEVGASVEVK 118 >sp|P05392|RL7_BACST 50S ribosomal protein L7/L12 (BL13) ('A' type) pir||R5BS12 ribosomal protein L12 - Bacillus stearothermophilus Length = 122 Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/122 (61%), Positives = 88/122 (72%), Gaps = 2/122 (1%) Query: 1 MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXX--EQSEFDVIL 58 M+KE I+E +K M+VLELN+LVKAIEEEF E++EFDVIL Sbjct: 1 MTKEQIIEAVKNMTVLELNELVKAIEEEFGVTAAAPVVVAGGAAAGAEAAAEKTEFDVIL 60 Query: 59 TSAGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAVE 118 AGA KI VIK+VREITGLGLKEAKDLVDN PKPIKE ++KE+AE +KA LEEAGA VE Sbjct: 61 ADAGAQKIKVIKVVREITGLGLKEAKDLVDNTPKPIKEGIAKEEAEEIKAALEEAGAKVE 120 Query: 119 LK 120 +K Sbjct: 121 IK 122 >ref|ZP_00103715.1| COG0222: Ribosomal protein L7/L12 [Desulfitobacterium hafniense] Length = 132 Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/124 (62%), Positives = 90/124 (72%), Gaps = 4/124 (3%) Query: 1 MSKET-ILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXX---EQSEFDV 56 MSK ILE +KG++VLEL +LVKA EEEF EQ+EFDV Sbjct: 9 MSKTAEILEAVKGLTVLELAELVKAFEEEFGVSAAAPVAVAAAPGAAAAPVAEEQTEFDV 68 Query: 57 ILTSAGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAA 116 +L +AGA KINVIK+VREITGLGLKEAK+LVD APKP+KEKVSK+DAEA+KAKL EAGA Sbjct: 69 VLMNAGAGKINVIKVVREITGLGLKEAKELVDGAPKPVKEKVSKDDAEAIKAKLVEAGAT 128 Query: 117 VELK 120 VE+K Sbjct: 129 VEVK 132 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.306 0.127 0.312 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 120,044,939 Number of extensions: 3546049 Number of successful extensions: 12105 Number of sequences better than 1.0e-05: 521 Number of HSP's gapped: 11781 Number of HSP's successfully gapped: 521 Length of query: 120 Length of database: 757,237,578 Length adjustment: 84 Effective length of query: 36 Effective length of database: 529,169,262 Effective search space: 19050093432 Effective search space used: 19050093432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 120 (50.8 bits)