BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0077.p (1120 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240992.1| DNA-directed RNA polymerase beta subunit [Bacil... 1887 0.0 ref|NP_976430.1| DNA-directed RNA polymerase, beta subunit [Baci... 1842 0.0 ref|NP_830003.1| DNA-directed RNA polymerase beta chain [Bacillu... 1841 0.0 ref|NP_654049.1| RNA_pol_B, RNA polymerase beta subunit [Bacillu... 1840 0.0 ref|NP_387988.1| RNA polymerase (beta subunit) [Bacillus subtili... 1823 0.0 >ref|NP_240992.1| DNA-directed RNA polymerase beta subunit [Bacillus halodurans] sp|Q9Z9M2|RPOB_BACHD DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) pir||T44375 DNA-directed RNA polymerase beta subunit rpoB [imported] - Bacillus halodurans (strain C-125) dbj|BAA75263.1| rpoB homologue (identity of 87% to B. subtilis ) [Bacillus halodurans] dbj|BAB03845.1| DNA-directed RNA polymerase beta subunit [Bacillus halodurans] Length = 1180 Score = 1887 bits (4888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 902/1121 (80%), Positives = 1027/1121 (91%), Gaps = 5/1121 (0%) Query: 1 VLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET 60 VLEFIDYSLGEPKY VD++KERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMT+T Sbjct: 63 VLEFIDYSLGEPKYPVDESKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTDT 122 Query: 61 GTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYV 120 GTFIINGAERVIVSQLVRSPSVY+S K+DKNGKK YTATVIPNRGAWLELETDAKDI+YV Sbjct: 123 GTFIINGAERVIVSQLVRSPSVYYSEKIDKNGKKGYTATVIPNRGAWLELETDAKDIVYV 182 Query: 121 RIDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRP 180 RIDRTRKIPVTVLLRALGFGSD EI++LLG DEY+RNTL+KDNTDS EKAL+EIYERLRP Sbjct: 183 RIDRTRKIPVTVLLRALGFGSDQEIIDLLGEDEYLRNTLEKDNTDSAEKALLEIYERLRP 242 Query: 181 GEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEI 240 GEPPT++NAKSLL +RFFDPKRYDLANVGRYK+NKKLHIKNRLFNQRLA+ L+D TGE+ Sbjct: 243 GEPPTVENAKSLLDSRFFDPKRYDLANVGRYKVNKKLHIKNRLFNQRLAETLIDPETGEV 302 Query: 241 LAESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPIEEG--RVI 298 +AE G ++DRR LD ++PY E +V +T R++GGV++ +++ LQ++ +++P ++ VI Sbjct: 303 IAEEGSIIDRRTLDRILPYLENNVGFRTVRMSGGVVEEDEVRLQSVKIYAPDDQDGEHVI 362 Query: 299 KLIANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFR 358 ++I NG ++K +KHIT ADII+SI+YF NLLH +G TDDIDHLGNRRLRSVGELLQNQFR Sbjct: 363 RVIGNGLVEKEIKHITPADIIASINYFFNLLHSVGGTDDIDHLGNRRLRSVGELLQNQFR 422 Query: 359 IGLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 418 IGLSRMERVVRERMSIQD N+ITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT Sbjct: 423 IGLSRMERVVRERMSIQDPNSITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 482 Query: 419 HKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYG 478 HKRRLSALGPGGLTRERAGFEVRDVH+SHYGRMCPIETPEGPNIGLINSLST+A++NE+G Sbjct: 483 HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNEFG 542 Query: 479 FIEAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSD 538 F+E PYR VDP+TGKVT IDYLTADEEDNYVVAQAN+++ EDG+F ++ +I R+ + Sbjct: 543 FMETPYRRVDPETGKVTAQIDYLTADEEDNYVVAQANMKLAEDGSFIDENIIARFR--GE 600 Query: 539 NITTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLV 598 NI + +RVDYMDVSPKQVVS AT+ IPFLENDDSNRALMG+NMQRQAVPLL+P+AP+V Sbjct: 601 NIV-VSRDRVDYMDVSPKQVVSAATSCIPFLENDDSNRALMGANMQRQAVPLLVPEAPIV 659 Query: 599 GTGMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRS 658 GTGMEH SAKDSG IVSK+ GI+ER +A EIW+RR+E V+GKE+KGD+ KY+L KF+RS Sbjct: 660 GTGMEHVSAKDSGAAIVSKHRGIVERVTAKEIWVRRLEEVDGKEIKGDLDKYRLQKFIRS 719 Query: 659 NQGTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLS 718 NQGT NQRP+ K GD+V+K +ILADGPS E GE+ALGRNV+V FMTWEGYNYEDAI+LS Sbjct: 720 NQGTSYNQRPIVKEGDVVEKREILADGPSMEKGEMALGRNVLVGFMTWEGYNYEDAIILS 779 Query: 719 EKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINA 778 E+LVK+DVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE+ALRNLDERGIIR+GAE+ Sbjct: 780 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKD 839 Query: 779 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENG 838 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLR PHG DGI++DVK+F RE+G Sbjct: 840 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKIFNREDG 899 Query: 839 DELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLN 898 DELPPGVNQLVRVYI QKRKI EGDKMAGRHGNKGV++RILPEEDMP+LPDGTP+ ++LN Sbjct: 900 DELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLN 959 Query: 899 PLGVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLY 958 PLGVPSRMNIGQVLE+HLGMAA RLG+HVA+PVFDGA E DV+ T+EEAGM R+GKT+LY Sbjct: 960 PLGVPSRMNIGQVLELHLGMAARRLGLHVASPVFDGASEEDVWATLEEAGMARDGKTILY 1019 Query: 959 DGRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1018 DGRTGE F+ V+VG+M+MIKLAHMVDDK+HARSTGPYSLVTQQPLGGKAQFGGQRFGEM Sbjct: 1020 DGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1079 Query: 1019 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSL 1078 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYE+IVKGEN+PEPGVPE+FKVLIKELQSL Sbjct: 1080 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSL 1139 Query: 1079 GMDVKILSGDEQEIEMKELDDEDETSGDKLSLNLEGAEVGI 1119 GMDVK+LS E+EIEMKELDDEDE + DKL+LN++ E + Sbjct: 1140 GMDVKMLSSTEEEIEMKELDDEDEQASDKLNLNIDSTESNV 1180 >ref|NP_976430.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus ATCC 10987] gb|AAS39038.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus ATCC 10987] Length = 1177 Score = 1842 bits (4771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 887/1114 (79%), Positives = 1007/1114 (90%), Gaps = 6/1114 (0%) Query: 2 LEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTETG 61 LEFIDYSLGEPKY+VD+ KERDVTYAAPLRVKVRLINKETGEVKEQ+VFMGDFPLMTETG Sbjct: 64 LEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMTETG 123 Query: 62 TFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYVR 121 TF+INGAERVIVSQLVRSPSVY+S KVDKNGK+ +TATVIPNRGAWLE ETDAKD++YVR Sbjct: 124 TFVINGAERVIVSQLVRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVR 183 Query: 122 IDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRPG 181 IDRTRK+PVTVLLRALGFGSD EI ELLG++EY+ NTL+KDNTDSTEKAL+EIYERLRPG Sbjct: 184 IDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLSNTLEKDNTDSTEKALLEIYERLRPG 243 Query: 182 EPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEIL 241 EPPT++NAKSLLV+RFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLA+ LVD TGEIL Sbjct: 244 EPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETGEIL 303 Query: 242 AESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPIEEG-RVIKL 300 A G ++DRR LD ++PY EK++ KT + GGV++ D+ LQ+I +++P EG RVI + Sbjct: 304 AAEGTILDRRTLDRILPYLEKNIGFKTAKPMGGVVEG-DVELQSIKIYAPESEGERVINV 362 Query: 301 IANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRIG 360 I N NI + VKHIT DI++SISYF NLL+ +G+TDDIDHLGNRRLRSVGELLQNQFRIG Sbjct: 363 IGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGELLQNQFRIG 422 Query: 361 LSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 420 LSRMERVVRERMSIQD NAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK Sbjct: 423 LSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 482 Query: 421 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFI 480 RRLSALGPGGLTRERAGFEVRDVH+SHYGRMCPIETPEGPNIGLINSLS+FA++NE+GFI Sbjct: 483 RRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFI 542 Query: 481 EAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSDNI 540 E PYR VDP+TG VT H+DYLTADEEDNYVVAQAN+++ E+G F ++ ++ R+ +NI Sbjct: 543 ETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFR--GENI 600 Query: 541 TTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGT 600 T R+DYMDVSPKQVVS ATA IPFLENDDSNRALMG+NMQRQAVPL+ P++P+VGT Sbjct: 601 VTN-KERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPESPIVGT 659 Query: 601 GMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRSNQ 660 GME+ SAKDSG ++ K+ GI+ER A E+W+RR V+G+ VKGD+ +YK+ KF+RSNQ Sbjct: 660 GMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 719 Query: 661 GTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEK 720 GTC NQRP+ G+ V KG+ILADGPS E+GELALGRNV+V FMTW+GYNYEDAI++SE+ Sbjct: 720 GTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAIIMSER 779 Query: 721 LVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINAGD 780 LVK+DVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE+ALRNLDERGIIR+GAE+ GD Sbjct: 780 LVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGD 839 Query: 781 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGDE 840 +LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHG GII+DVKVF RE+GDE Sbjct: 840 LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDE 899 Query: 841 LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNPL 900 LPPGVNQLVR YI QKRKISEGDKMAGRHGNKGV++RILPEEDMP+LPDGTP+ ++LNPL Sbjct: 900 LPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPL 959 Query: 901 GVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLYDG 960 GVPSRMNIGQVLE+HLGMAA LGIH+ATPVFDGARE DV+ T+EEAGM + KT+LYDG Sbjct: 960 GVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGMANDAKTILYDG 1019 Query: 961 RTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1020 RTGE F+ V+VGVM+MIKLAHMVDDK+HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1020 RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1079 Query: 1021 WALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSLGM 1080 WALEAYGAAYTLQEILTVKSDDVVGRVKTYE+IVKGEN+PEPGVPE+FKVLIKELQSLGM Sbjct: 1080 WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGM 1139 Query: 1081 DVKILSGDEQEIEMKEL-DDEDETSGDKLSLNLE 1113 DVK++S D+ EIEM++ DD+D S DKL++ +E Sbjct: 1140 DVKMMSSDDTEIEMRDTEDDDDHQSADKLNVEVE 1173 >ref|NP_830003.1| DNA-directed RNA polymerase beta chain [Bacillus cereus ATCC 14579] sp|Q81J48|RPOB_BACCR DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) gb|AAP07204.1| DNA-directed RNA polymerase beta chain [Bacillus cereus ATCC 14579] Length = 1177 Score = 1841 bits (4768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 885/1114 (79%), Positives = 1006/1114 (90%), Gaps = 6/1114 (0%) Query: 2 LEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTETG 61 LEFIDYSLGEPKY+VD+ KERDVTYAAPLRVKVRLINKETGEVKEQ+VFMGDFPLMTETG Sbjct: 64 LEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMTETG 123 Query: 62 TFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYVR 121 TF+INGAERVIVSQLVRSPSVY+S KVDKNGK+ +TATVIPNRGAWLE ETDAKD++YVR Sbjct: 124 TFVINGAERVIVSQLVRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVR 183 Query: 122 IDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRPG 181 IDRTRK+PVTVLLRALGFGSD EI ELLG++EY+ NTL+KDNTDSTEKAL+EIYERLRPG Sbjct: 184 IDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLSNTLEKDNTDSTEKALLEIYERLRPG 243 Query: 182 EPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEIL 241 EPPT++NAKSLLV+RFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLA+ LVD TGEIL Sbjct: 244 EPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETGEIL 303 Query: 242 AESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPIEEG-RVIKL 300 A G ++DRR LD ++PY EK++ KT + GGV++ D+ LQ+I +++P EG RVI + Sbjct: 304 AAEGTILDRRTLDRILPYLEKNIGFKTAKPMGGVVEG-DVELQSIKIYAPESEGERVINV 362 Query: 301 IANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRIG 360 I N NI + VKHIT DI++SISYF NLL+ +G+TDDIDHLGNRRLRSVGELLQNQFRIG Sbjct: 363 IGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGELLQNQFRIG 422 Query: 361 LSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 420 LSRMERVVRERMSIQD NAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK Sbjct: 423 LSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 482 Query: 421 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFI 480 RRLSALGPGGLTRERAGFEVRDVH+SHYGRMCPIETPEGPNIGLINSLS+FA++NE+GFI Sbjct: 483 RRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFI 542 Query: 481 EAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSDNI 540 E PYR VDP+TG VT H+DYLTADEEDNYVVAQAN+++ ++G F + ++ R+ +NI Sbjct: 543 ETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVARFR--GENI 600 Query: 541 TTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGT 600 T R+DYMDVSPKQVVS ATA IPFLENDDSNRALMG+NMQRQAVPL+ P++P+VGT Sbjct: 601 VTN-RERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPESPIVGT 659 Query: 601 GMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRSNQ 660 GME+ SAKDSG ++ K+ G++ER A E+W+RR V+G+ VKGD+ +YK+ KF+RSNQ Sbjct: 660 GMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 719 Query: 661 GTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEK 720 GTC NQRP+ G+ V KG+ILADGPS E+GELALGRNV+V FMTW+GYNYEDAI++SE+ Sbjct: 720 GTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAIIMSER 779 Query: 721 LVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINAGD 780 LVK+DVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE+ALRNLDERGIIR+GAE+ GD Sbjct: 780 LVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGD 839 Query: 781 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGDE 840 +LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHG GII+DVKVF RE+GDE Sbjct: 840 LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDE 899 Query: 841 LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNPL 900 LPPGVNQLVR YI QKRKISEGDKMAGRHGNKGV++RILPEEDMP+LPDGTP+ ++LNPL Sbjct: 900 LPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPL 959 Query: 901 GVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLYDG 960 GVPSRMNIGQVLE+HLGMAA LGIH+ATPVFDGARE DV+ T+EEAGM + KT+LYDG Sbjct: 960 GVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGMANDAKTILYDG 1019 Query: 961 RTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1020 RTGE F+ V+VGVM+MIKLAHMVDDK+HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1020 RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1079 Query: 1021 WALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSLGM 1080 WALEAYGAAYTLQEILTVKSDDVVGRVKTYE+IVKGEN+PEPGVPE+FKVLIKELQSLGM Sbjct: 1080 WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGM 1139 Query: 1081 DVKILSGDEQEIEMKEL-DDEDETSGDKLSLNLE 1113 DVK++S D+ EIEM++ DD+D S DKL++ +E Sbjct: 1140 DVKMMSSDDTEIEMRDTEDDDDHQSADKLNVEVE 1173 >ref|NP_654049.1| RNA_pol_B, RNA polymerase beta subunit [Bacillus anthracis A2012] ref|NP_842670.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. Ames] sp|Q81VT8|RPOB_BACAA DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) gb|AAP24156.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. Ames] Length = 1177 Score = 1840 bits (4767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 885/1114 (79%), Positives = 1007/1114 (90%), Gaps = 6/1114 (0%) Query: 2 LEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTETG 61 LEFIDYSLGEPKY+VD+ KERDVTYAAPLRVKVRLINKETGEVKEQ+VFMGDFPLMTETG Sbjct: 64 LEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMTETG 123 Query: 62 TFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYVR 121 TF+INGAERVIVSQLVRSPSVY+S KVDKNGK+ +TATVIPNRGAWLE ETDAKD++YVR Sbjct: 124 TFVINGAERVIVSQLVRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVR 183 Query: 122 IDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRPG 181 IDRTRK+PVTVLLRALGFGSD EI ELLG++EY+ NTL+KDNTDSTEKAL+EIYERLRPG Sbjct: 184 IDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLSNTLEKDNTDSTEKALLEIYERLRPG 243 Query: 182 EPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEIL 241 EPPT++NAKSLLV+RFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLA+ LVD TGEIL Sbjct: 244 EPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETGEIL 303 Query: 242 AESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPIEEG-RVIKL 300 A G ++DRR LD ++PY EK++ KT + GGV++ D+ LQ+I +++P EG RVI + Sbjct: 304 AAEGTILDRRTLDRILPYLEKNIGFKTAKPMGGVVEG-DVELQSIKIYAPESEGERVINV 362 Query: 301 IANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRIG 360 I N NI + VKHIT DI++SISYF NLL+ +G+TDDIDHLGNRRLRSVGELLQNQFRIG Sbjct: 363 IGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGELLQNQFRIG 422 Query: 361 LSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 420 LSRMERVVRERMSIQD NAITPQALINIRPVIA+IKEFFGSSQLSQFMDQTNPLAELTHK Sbjct: 423 LSRMERVVRERMSIQDTNAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHK 482 Query: 421 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFI 480 RRLSALGPGGLTRERAGFEVRDVH+SHYGRMCPIETPEGPNIGLINSLS+FA++NE+GFI Sbjct: 483 RRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFI 542 Query: 481 EAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSDNI 540 E PYR VDP+TG VT H+DYLTADEEDNYVVAQAN+++ E+G F ++ ++ R+ +NI Sbjct: 543 ETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFR--GENI 600 Query: 541 TTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGT 600 T R+DYMDVSPKQVVS ATA IPFLENDDSNRALMG+NMQRQAVPL+ P++P+VGT Sbjct: 601 VTN-KERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPESPIVGT 659 Query: 601 GMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRSNQ 660 GME+ SAKDSG ++ K+ GI+ER A E+W+RR V+G+ VKGD+ +YK+ KF+RSNQ Sbjct: 660 GMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 719 Query: 661 GTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEK 720 GTC NQRP+ G+ V KG+ILADGPS E+GELALGRNV+V FMTW+GYNYEDAI++SE+ Sbjct: 720 GTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAIIMSER 779 Query: 721 LVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINAGD 780 LVK+DVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE+ALRNLDERGIIR+GAE+ GD Sbjct: 780 LVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGD 839 Query: 781 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGDE 840 +LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHG GII+DVKVF RE+GDE Sbjct: 840 LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDE 899 Query: 841 LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNPL 900 LPPGVNQLVR YI QKRKISEGDKMAGRHGNKGV++RILPEEDMP+LPDGTP+ ++LNPL Sbjct: 900 LPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPL 959 Query: 901 GVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLYDG 960 GVPSRMNIGQVLE+HLGMAA LGIH+ATPVFDGARE DV+ T+EEAGM + KT+LYDG Sbjct: 960 GVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGMANDAKTILYDG 1019 Query: 961 RTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1020 RTGE F+ V+VGVM+MIKLAHMVDDK+HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1020 RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1079 Query: 1021 WALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSLGM 1080 WALEAYGAAYTLQEILTVKSDDV+GRVKTYE+IVKGEN+PEPGVPE+FKVLIKELQSLGM Sbjct: 1080 WALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGM 1139 Query: 1081 DVKILSGDEQEIEMKEL-DDEDETSGDKLSLNLE 1113 DVK++S D+ EIEM++ DD+D S DKL++ +E Sbjct: 1140 DVKMMSSDDTEIEMRDTEDDDDHQSADKLNVEVE 1173 >ref|NP_387988.1| RNA polymerase (beta subunit) [Bacillus subtilis] sp|P37870|RPOB_BACSU DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) pir||F69698 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Bacillus subtilis gb|AAB00972.1| RNA polymerase beta-subunit emb|CAB11883.1| RNA polymerase (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1193 Score = 1823 bits (4723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 879/1113 (78%), Positives = 1004/1113 (90%), Gaps = 7/1113 (0%) Query: 2 LEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTETG 61 LEFIDYSLGEPKY V+++KERDVTY+APLRVKVRLINKETGEVK+Q+VFMGDFP+MT+TG Sbjct: 64 LEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPIMTDTG 123 Query: 62 TFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYVR 121 TFIINGAERVIVSQLVRSPSVYFS KVDKNGKK +TATVIPNRGAWLE ETDAKD++YVR Sbjct: 124 TFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVVYVR 183 Query: 122 IDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRPG 181 IDRTRK+PVTVLLRALGFGSD EIL+L+G +EY+RNTLDKDNT++++KAL+EIYERLRPG Sbjct: 184 IDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKALLEIYERLRPG 243 Query: 182 EPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEIL 241 EPPT++NAKSLL +RFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLA+ LVD TGEIL Sbjct: 244 EPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETGEIL 303 Query: 242 AESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPI-EEG-RVIK 299 AE GQ++DRR LD+++PY E + + GGV++ E + LQ+I +F+P +EG +VI Sbjct: 304 AEKGQILDRRTLDKVLPYLENGIGFRKLYPNGGVVEDE-VTLQSIKIFAPTDQEGEQVIN 362 Query: 300 LIANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRI 359 +I N I++ +K+IT ADIISSISYF NLLHG+G+TDDIDHLGNRRLRSVGELLQNQFRI Sbjct: 363 VIGNAYIEEEIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRI 422 Query: 360 GLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH 419 GLSRMERVVRERMSIQD N ITPQ LINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH Sbjct: 423 GLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH 482 Query: 420 KRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGF 479 KRRLSALGPGGLTRERAG EVRDVH+SHYGRMCPIETPEGPNIGLINSLS++A++N +GF Sbjct: 483 KRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGF 542 Query: 480 IEAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSDN 539 IE PYR VDP+TGKVT IDYLTADEEDNYVVAQAN ++D++G F +D ++ R+ ++ Sbjct: 543 IETPYRRVDPETGKVTGRIDYLTADEEDNYVVAQANARLDDEGAFIDDSIVARFRGEN-- 600 Query: 540 ITTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVG 599 T + NRVDYMDVSPKQVVS ATA IPFLENDDSNRALMG+NMQRQAVPL+ P+AP VG Sbjct: 601 -TVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPFVG 659 Query: 600 TGMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRSN 659 TGME+ S KDSG ++ K+ GI+ER A +W+RR E V+G++VKG++ KY L KF+RSN Sbjct: 660 TGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKFVRSN 719 Query: 660 QGTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSE 719 QGTC NQRP+ GD V KG+ILADGPS E+GELALGRNV+V FMTW+GYNYEDAI++SE Sbjct: 720 QGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSE 779 Query: 720 KLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINAG 779 +LVK+DVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE+ALRNLD+RGIIRIGAE+ G Sbjct: 780 RLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDG 839 Query: 780 DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGD 839 D+LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHG GII DVKVF RE+GD Sbjct: 840 DLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGD 899 Query: 840 ELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNP 899 ELPPGVNQLVRVYI QKRKISEGDKMAGRHGNKGV+++ILPEEDMP+LPDGTP+ ++LNP Sbjct: 900 ELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNP 959 Query: 900 LGVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLYD 959 LGVPSRMNIGQVLE+H+GMAA LGIH+A+PVFDGARE DV++T+EEAGM R+ KTVLYD Sbjct: 960 LGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYD 1019 Query: 960 GRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1019 GRTGE F+ V+VG+M+MIKLAHMVDDK+HARSTGPYSLVTQQPLGGKAQFGG FGEME Sbjct: 1020 GRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGHGFGEME 1079 Query: 1020 VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSLG 1079 VWALEAYGAAYTLQEILTVKSDDVVGRVKTYE+IVKG+N+PEPGVPE+FKVLIKELQSLG Sbjct: 1080 VWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLG 1139 Query: 1080 MDVKILSGDEQEIEMKEL-DDEDETSGDKLSLN 1111 MDVKILSGDE+EIEM++L D+ED D L+L+ Sbjct: 1140 MDVKILSGDEEEIEMRDLEDEEDAKQADGLALS 1172 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,692,785,305 Number of extensions: 75606670 Number of successful extensions: 200202 Number of sequences better than 1.0e-05: 3182 Number of HSP's gapped: 194708 Number of HSP's successfully gapped: 4745 Length of query: 1120 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 984 Effective length of database: 387,984,114 Effective search space: 381776368176 Effective search space used: 381776368176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)