BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0074.p (64 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_563326.1| 30S ribosomal protein S12 [Clostridium perfring... 120 1e-26 ref|NP_268419.1| 30S ribosomal protein S12 [Lactococcus lactis s... 118 4e-26 ref|NP_240995.1| 30S ribosomal protein S12; ribosomal protein S1... 118 5e-26 pir||T44378 hypothetical protein rpsL [imported] - Bacillus halo... 117 6e-26 ref|NP_268624.1| 30S ribosomal protein S12 [Streptococcus pyogen... 115 3e-25 >ref|NP_563326.1| 30S ribosomal protein S12 [Clostridium perfringens] sp|Q8XHR9|RS12_CLOPE 30S ribosomal protein S12 dbj|BAB82116.1| 30S ribosomal protein S12 [Clostridium perfringens str. 13] Length = 126 Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 56/64 (87%), Positives = 61/64 (95%) Query: 1 VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60 VTAYIPG+GHNLQEHSVVL+RGG+VKDL GVRYHIVRGALD+AGVANRMQ RSKYGAK+P Sbjct: 63 VTAYIPGVGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDSAGVANRMQGRSKYGAKKP 122 Query: 61 KAKK 64 K KK Sbjct: 123 KQKK 126 >ref|NP_268419.1| 30S ribosomal protein S12 [Lactococcus lactis subsp. lactis] sp|Q9CDF9|RS12_LACLA 30S ribosomal protein S12 pir||F86907 30S ribosomal protein S12 [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK06360.1| 30S ribosomal protein S12 [Lactococcus lactis subsp. lactis] Length = 137 Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/62 (90%), Positives = 60/62 (96%) Query: 1 VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60 VTAYIPGIGHNLQEHSVVLLRGG+VKDL GVRYHIVRGALDTAGVA+R Q+RSKYGAK+P Sbjct: 76 VTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGVADRKQSRSKYGAKKP 135 Query: 61 KA 62 KA Sbjct: 136 KA 137 >ref|NP_240995.1| 30S ribosomal protein S12; ribosomal protein S12 [Bacillus halodurans] sp|Q9Z9L9|RS12_BACHD 30S ribosomal protein S12 pir||A83666 ribosomal protein S12 rpsL [imported] - Bacillus halodurans (strain C-125) dbj|BAB03848.1| 30S ribosomal protein S12 [Bacillus halodurans] Length = 139 Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 56/64 (87%), Positives = 59/64 (92%) Query: 1 VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60 VTAYIPGIGHNLQEHSVVL+RGG+VKDL GVRYHIVRGALDTAGV +RMQ RSKYG KRP Sbjct: 76 VTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVQDRMQGRSKYGTKRP 135 Query: 61 KAKK 64 K KK Sbjct: 136 KDKK 139 >pir||T44378 hypothetical protein rpsL [imported] - Bacillus halodurans dbj|BAA75266.1| rpsL homologue (identity of 82% to B. subtilis ) [Bacillus halodurans] Length = 139 Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 56/64 (87%), Positives = 59/64 (92%) Query: 1 VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60 VTAYIPGIGHNLQEHSVVL+RGG+VKDL GVRYHIVRGALDTAGV +RMQ RSKYG KRP Sbjct: 76 VTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVQDRMQGRSKYGTKRP 135 Query: 61 KAKK 64 K KK Sbjct: 136 KDKK 139 >ref|NP_268624.1| 30S ribosomal protein S12 [Streptococcus pyogenes] ref|NP_606539.1| 30S ribosomal protein S12 [Streptococcus pyogenes MGAS8232] ref|NP_664002.1| 30S ribosomal protein S12 [Streptococcus pyogenes MGAS315] ref|NP_801465.1| 30S ribosomal protein S12 [Streptococcus pyogenes SSI-1] sp|P58172|RS12_STRPY 30S ribosomal protein S12 gb|AAK33345.1| 30S ribosomal protein S12 [Streptococcus pyogenes M1 GAS] gb|AAL97038.1| 30S ribosomal protein S12 [Streptococcus pyogenes MGAS8232] gb|AAM78805.1| 30S ribosomal protein S12 [Streptococcus pyogenes MGAS315] dbj|BAC63298.1| 30S ribosomal protein S12 [Streptococcus pyogenes SSI-1] Length = 137 Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 55/61 (90%), Positives = 58/61 (95%) Query: 1 VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60 VTAYIPGIGHNLQEHSVVL+RGG+VKDL GVRYHIVRGALDTAGVA+R Q RSKYGAKRP Sbjct: 76 VTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVADRKQGRSKYGAKRP 135 Query: 61 K 61 K Sbjct: 136 K 136 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 86,486,019 Number of extensions: 2470939 Number of successful extensions: 5819 Number of sequences better than 1.0e-05: 700 Number of HSP's gapped: 5819 Number of HSP's successfully gapped: 700 Length of query: 64 Length of database: 757,237,578 Length adjustment: 35 Effective length of query: 29 Effective length of database: 662,209,113 Effective search space: 19204064277 Effective search space used: 19204064277 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)