BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0072.p (140 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240996.1| 30S ribosomal protein S7; ribosomal protein S7 ... 255 3e-67 ref|NP_654053.1| Ribosomal_S7, Ribosomal protein S7p/S5e [Bacill... 247 7e-65 ref|NP_842674.1| ribosomal protein S7 [Bacillus anthracis str. A... 247 7e-65 ref|NP_830007.1| SSU ribosomal protein S7P [Bacillus cereus ATCC... 246 8e-65 ref|NP_813998.1| ribosomal protein S7 [Enterococcus faecalis V58... 241 6e-63 >ref|NP_240996.1| 30S ribosomal protein S7; ribosomal protein S7 (BS7) [Bacillus halodurans] sp|Q9Z9L8|RS7_BACHD 30S ribosomal protein S7 pir||T44379 ribosomal protein S7 (BS7) rpsG [imported] - Bacillus halodurans (strain C-125) dbj|BAA75267.1| rpsG homologue (identity of 84% to B. subtilis ) [Bacillus halodurans] dbj|BAB03849.1| 30S ribosomal protein S7 [Bacillus halodurans] Length = 156 Score = 255 bits (651), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 119/140 (85%), Positives = 134/140 (95%) Query: 1 LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60 +YNSKLVTRLINRIM+ GKRG+AQ ILYN+F+L++ER+GK+PMEVF+ A+KNIMPVLEVK Sbjct: 17 IYNSKLVTRLINRIMVDGKRGIAQKILYNAFELVRERSGKDPMEVFDQALKNIMPVLEVK 76 Query: 61 ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120 ARRVGGANYQVP+EVKPERRT LGLRWLVNYSR RGEKTMEERLA EI+DA+NNTGA+VK Sbjct: 77 ARRVGGANYQVPVEVKPERRTTLGLRWLVNYSRLRGEKTMEERLANEILDAANNTGAAVK 136 Query: 121 KREDTHKMAEANKAFAHYRW 140 KREDTHKMAEANKAFAHYRW Sbjct: 137 KREDTHKMAEANKAFAHYRW 156 >ref|NP_654053.1| Ribosomal_S7, Ribosomal protein S7p/S5e [Bacillus anthracis A2012] Length = 155 Score = 247 bits (630), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 114/140 (81%), Positives = 131/140 (93%) Query: 1 LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60 +YNSKLVTRLIN++M+ GK+G +Q+ILYN+F ++ ERTGKEPMEVFE A+KNIMPVLEV+ Sbjct: 16 MYNSKLVTRLINKMMVDGKKGKSQTILYNAFDIVSERTGKEPMEVFEQALKNIMPVLEVR 75 Query: 61 ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120 ARRVGGANYQVP+EV+PERRT LGLRWLVNY+R RGEKTMEERLA EI+DA+NN GASVK Sbjct: 76 ARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNAGASVK 135 Query: 121 KREDTHKMAEANKAFAHYRW 140 KREDTHKMAEANKAFAHYRW Sbjct: 136 KREDTHKMAEANKAFAHYRW 155 >ref|NP_842674.1| ribosomal protein S7 [Bacillus anthracis str. Ames] ref|NP_976434.1| ribosomal protein S7 [Bacillus cereus ATCC 10987] gb|AAP24160.1| ribosomal protein S7 [Bacillus anthracis str. Ames] gb|AAS39042.1| ribosomal protein S7 [Bacillus cereus ATCC 10987] Length = 156 Score = 247 bits (630), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 114/140 (81%), Positives = 131/140 (93%) Query: 1 LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60 +YNSKLVTRLIN++M+ GK+G +Q+ILYN+F ++ ERTGKEPMEVFE A+KNIMPVLEV+ Sbjct: 17 MYNSKLVTRLINKMMVDGKKGKSQTILYNAFDIVSERTGKEPMEVFEQALKNIMPVLEVR 76 Query: 61 ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120 ARRVGGANYQVP+EV+PERRT LGLRWLVNY+R RGEKTMEERLA EI+DA+NN GASVK Sbjct: 77 ARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNAGASVK 136 Query: 121 KREDTHKMAEANKAFAHYRW 140 KREDTHKMAEANKAFAHYRW Sbjct: 137 KREDTHKMAEANKAFAHYRW 156 >ref|NP_830007.1| SSU ribosomal protein S7P [Bacillus cereus ATCC 14579] gb|AAP07208.1| SSU ribosomal protein S7P [Bacillus cereus ATCC 14579] Length = 156 Score = 246 bits (629), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 114/140 (81%), Positives = 131/140 (93%) Query: 1 LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60 +YNSKLVTRLIN++M+ GK+G +Q+ILYN+F ++ ERTGKEPMEVFE A+KNIMPVLEV+ Sbjct: 17 MYNSKLVTRLINKMMVDGKKGKSQTILYNAFDIVNERTGKEPMEVFEQALKNIMPVLEVR 76 Query: 61 ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120 ARRVGGANYQVP+EV+PERRT LGLRWLVNY+R RGEKTMEERLA EI+DA+NN GASVK Sbjct: 77 ARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNAGASVK 136 Query: 121 KREDTHKMAEANKAFAHYRW 140 KREDTHKMAEANKAFAHYRW Sbjct: 137 KREDTHKMAEANKAFAHYRW 156 >ref|NP_813998.1| ribosomal protein S7 [Enterococcus faecalis V583] gb|AAO80069.1| ribosomal protein S7 [Enterococcus faecalis V583] Length = 156 Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 109/140 (77%), Positives = 130/140 (92%) Query: 1 LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60 +YNSKLVTRLINR+M+ GKRG+A +I+YNSF +I+E TG +P+EVFE A+KN+MPVLEVK Sbjct: 17 IYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLEVFEQAMKNVMPVLEVK 76 Query: 61 ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120 ARRVGG+NYQVP+EV+PERRT LGLRW+VNY+R RGE TMEERLA EI+DA+NNTGASVK Sbjct: 77 ARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERLAKEIMDAANNTGASVK 136 Query: 121 KREDTHKMAEANKAFAHYRW 140 KREDTHKMA+AN+AFAHYRW Sbjct: 137 KREDTHKMADANRAFAHYRW 156 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 190,734,427 Number of extensions: 6898902 Number of successful extensions: 18491 Number of sequences better than 1.0e-05: 810 Number of HSP's gapped: 18403 Number of HSP's successfully gapped: 810 Length of query: 140 Length of database: 757,237,578 Length adjustment: 101 Effective length of query: 39 Effective length of database: 483,012,579 Effective search space: 18837490581 Effective search space used: 18837490581 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)