BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0065.p (102 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_387996.1| ribosomal protein S10 (BS13) [Bacillus subtilis... 200 1e-50 ref|NP_240999.1| 30S ribosomal protein S10; ribosomal protein S1... 199 1e-50 ref|NP_472111.1| ribosomal protein S10 [Listeria innocua] >gi|16... 197 5e-50 gb|AAC45955.1| S10 [Bacillus subtilis] 197 7e-50 ref|NP_830010.1| SSU ribosomal protein S10P [Bacillus cereus ATC... 194 5e-49 >ref|NP_387996.1| ribosomal protein S10 (BS13) [Bacillus subtilis] sp|P21471|RS10_BACSU 30S ribosomal protein S10 (BS13) pir||A69700 ribosomal protein S10 (rpsJ) - Bacillus subtilis dbj|BAA11006.1| ribosomal protein S10 [Bacillus subtilis] emb|CAB11891.1| ribosomal protein S10 (BS13) [Bacillus subtilis subsp. subtilis str. 168] Length = 102 Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/102 (97%), Positives = 99/102 (97%) Query: 1 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGA VSGPIPLPTEK V TILRAVHKYKD Sbjct: 1 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKD 60 Query: 61 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL Sbjct: 61 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102 >ref|NP_240999.1| 30S ribosomal protein S10; ribosomal protein S10 (BS13) [Bacillus halodurans] sp|Q9Z9L5|RS10_BACHD 30S ribosomal protein S10 pir||T44382 ribosomal protein S10 (BS13) rpsJ [imported] - Bacillus halodurans (strain C-125) dbj|BAA75270.1| rpsJ homologue (identity of 98% to B. subtilis ) [Bacillus halodurans] dbj|BAB03852.1| 30S ribosomal protein S10 [Bacillus halodurans] Length = 102 Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/102 (96%), Positives = 99/102 (97%) Query: 1 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60 MAKQKIRIRLKAYDHR+LDQSAEKIVETAKRSGA VSGPIPLPTEK V TILRAVHKYKD Sbjct: 1 MAKQKIRIRLKAYDHRVLDQSAEKIVETAKRSGANVSGPIPLPTEKSVYTILRAVHKYKD 60 Query: 61 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL Sbjct: 61 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102 >ref|NP_472111.1| ribosomal protein S10 [Listeria innocua] ref|NP_466156.1| ribosomal protein S10 [Listeria monocytogenes EGD-e] sp|Q927K6|RS10_LISMO 30S ribosomal protein S10 pir||AH1779 ribosomal protein S10 [imported] - Listeria innocua (strain Clip11262) pir||AI1403 ribosomal protein S10 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00711.1| ribosomal protein S10 [Listeria monocytogenes] emb|CAC98008.1| ribosomal protein S10 [Listeria innocua] Length = 102 Score = 197 bits (502), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 96/102 (94%), Positives = 99/102 (97%) Query: 1 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGA VSGPIPLPTEK + T+LRAVHKYKD Sbjct: 1 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSIYTVLRAVHKYKD 60 Query: 61 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102 SREQFEMRTHKRLIDIVNPTPQTVD+LMRLDLPSGVDIEIKL Sbjct: 61 SREQFEMRTHKRLIDIVNPTPQTVDSLMRLDLPSGVDIEIKL 102 >gb|AAC45955.1| S10 [Bacillus subtilis] Length = 102 Score = 197 bits (501), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 98/102 (96%), Positives = 98/102 (96%) Query: 1 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGA VSGPIPLPTEK V TIL AVHKYKD Sbjct: 1 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILLAVHKYKD 60 Query: 61 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL Sbjct: 61 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102 >ref|NP_830010.1| SSU ribosomal protein S10P [Bacillus cereus ATCC 14579] sp|Q81J43|RS10_BACCR 30S ribosomal protein S10 gb|AAP07211.1| SSU ribosomal protein S10P [Bacillus cereus ATCC 14579] Length = 102 Score = 194 bits (493), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 96/102 (94%), Positives = 99/102 (97%) Query: 1 MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60 MAK+KIRIRLKAYDHRILDQSAEKIVETAKRSGA VSGPIPLPTEK V TILRAVHKYKD Sbjct: 1 MAKEKIRIRLKAYDHRILDQSAEKIVETAKRSGATVSGPIPLPTEKTVYTILRAVHKYKD 60 Query: 61 SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102 SREQFEMRTHKRLIDIV+PTPQTVD+LMRLDLPSGVDIEIKL Sbjct: 61 SREQFEMRTHKRLIDIVSPTPQTVDSLMRLDLPSGVDIEIKL 102 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 142,312,787 Number of extensions: 5028436 Number of successful extensions: 14534 Number of sequences better than 1.0e-05: 520 Number of HSP's gapped: 14523 Number of HSP's successfully gapped: 520 Length of query: 102 Length of database: 757,237,578 Length adjustment: 69 Effective length of query: 33 Effective length of database: 569,895,747 Effective search space: 18806559651 Effective search space used: 18806559651 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)