BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0064.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241000.1| 50S ribosomal protein L3; ribosomal protein L3 ... 285 4e-76 ref|NP_387997.1| ribosomal protein L3 (BL3) [Bacillus subtilis] ... 281 6e-75 ref|NP_830011.1| LSU ribosomal protein L3P [Bacillus cereus ATCC... 276 3e-73 ref|NP_842678.1| ribosomal protein L3 [Bacillus anthracis str. A... 276 3e-73 ref|NP_466155.1| ribosomal protein L3 [Listeria monocytogenes EG... 276 3e-73 >ref|NP_241000.1| 50S ribosomal protein L3; ribosomal protein L3 (BL3) [Bacillus halodurans] sp|Q9Z9L4|RL3_BACHD 50S ribosomal protein L3 pir||T44383 ribosomal protein L3 (BL3) rplC [imported] - Bacillus halodurans (strain C-125) dbj|BAA75271.1| rplC homologue (identity of 81% to B. subtilis ) [Bacillus halodurans] dbj|BAB03853.1| 50S ribosomal protein L3 [Bacillus halodurans] Length = 209 Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 138/205 (67%), Positives = 163/205 (79%) Query: 2 KGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 KGILGKK+GMTQVF G+VI V+VIEA P VVLQKK ++ DGYEAVQLGF D+K++ +N Sbjct: 3 KGILGKKVGMTQVFAENGDVIPVTVIEAAPNVVLQKKTVDSDGYEAVQLGFDDQKQNNAN 62 Query: 62 KPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQGV 121 KPE+GHA KA PKR+++EIRGV+L EVGQE+K D F EG+ VDVTGT+KGKGF G Sbjct: 63 KPEKGHAAKAETAPKRFIKEIRGVNLDEFEVGQEIKVDAFAEGDIVDVTGTSKGKGFAGA 122 Query: 122 IKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDVE 181 IKR Q+RGPM+HGSRYHRRPGSMG + NRV KGK LPG MG VTVQ LEIIKVD E Sbjct: 123 IKRHNQARGPMSHGSRYHRRPGSMGPVDPNRVFKGKALPGRMGGEQVTVQNLEIIKVDAE 182 Query: 182 RNVLLVKGAIPGPKNSFVKVKETVK 206 RN+LLVKG +PG K S+V V+ +K Sbjct: 183 RNLLLVKGNVPGAKKSYVTVRSAIK 207 >ref|NP_387997.1| ribosomal protein L3 (BL3) [Bacillus subtilis] sp|P42920|RL3_BACSU 50S ribosomal protein L3 (BL3) pir||G69694 ribosomal protein L3 (BL3) rplC - Bacillus subtilis gb|AAC45956.1| L3 [Bacillus subtilis] emb|CAB11892.1| ribosomal protein L3 (BL3) [Bacillus subtilis subsp. subtilis str. 168] Length = 209 Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 136/205 (66%), Positives = 161/205 (78%) Query: 2 KGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 KGILG+K+GMTQVF G++I V+VIEA P VVLQKK DGYEA+QLGF DK+E SN Sbjct: 3 KGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSN 62 Query: 62 KPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQGV 121 KPE+GH KA PKR+V+E+RGV++ A EVGQE+K +IF+ GE VDVTG +KGKGFQG Sbjct: 63 KPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGA 122 Query: 122 IKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDVE 181 IKR GQSRGPM+HGSRYHRRPGSMG + NRV KGK LPG MG +TVQ LEI+KVD E Sbjct: 123 IKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAE 182 Query: 182 RNVLLVKGAIPGPKNSFVKVKETVK 206 RN+LL+KG +PG K S + VK VK Sbjct: 183 RNLLLIKGNVPGAKKSLITVKSAVK 207 >ref|NP_830011.1| LSU ribosomal protein L3P [Bacillus cereus ATCC 14579] sp|Q81J42|RL3_BACCR 50S ribosomal protein L3 gb|AAP07212.1| LSU ribosomal protein L3P [Bacillus cereus ATCC 14579] Length = 210 Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 135/205 (65%), Positives = 158/205 (77%) Query: 2 KGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 KGILG+K+GMTQVF G +I V+VI A P VVLQKK DGY A+QLGF DK+E +N Sbjct: 3 KGILGRKIGMTQVFAENGELIPVTVIAANPNVVLQKKTTETDGYNAIQLGFEDKREKLTN 62 Query: 62 KPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQGV 121 KPEQGH KA+ TPKR++REIR D+ LEVGQE+K D+F GE VDVTG +KGKGFQGV Sbjct: 63 KPEQGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVDVFATGEIVDVTGISKGKGFQGV 122 Query: 122 IKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDVE 181 IKR GQSRGPM+HGSRYHRRPGSMG + NRV KGK+L G MG VT+Q LEI++VD E Sbjct: 123 IKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKGKKLAGRMGGDQVTIQNLEIVQVDTE 182 Query: 182 RNVLLVKGAIPGPKNSFVKVKETVK 206 RN+LLVKG +PG K S V V+ VK Sbjct: 183 RNLLLVKGNVPGAKKSLVVVQGAVK 207 >ref|NP_842678.1| ribosomal protein L3 [Bacillus anthracis str. Ames] ref|NP_976438.1| ribosomal protein L3 [Bacillus cereus ATCC 10987] sp|Q81VT0|RL3_BACAA 50S ribosomal protein L3 gb|AAP24164.1| ribosomal protein L3 [Bacillus anthracis str. Ames] gb|AAS39046.1| ribosomal protein L3 [Bacillus cereus ATCC 10987] Length = 210 Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 135/205 (65%), Positives = 158/205 (77%) Query: 2 KGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 KGILG+K+GMTQVF G +I V+VI A P VVLQKK DGY A+QLGF DK+E +N Sbjct: 3 KGILGRKIGMTQVFAENGELIPVTVIAANPNVVLQKKTTETDGYNAIQLGFEDKREKLTN 62 Query: 62 KPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQGV 121 KPEQGH KA+ TPKR++REIR D+ LEVGQE+K D+F GE VDVTG +KGKGFQGV Sbjct: 63 KPEQGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVDVFATGEIVDVTGISKGKGFQGV 122 Query: 122 IKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDVE 181 IKR GQSRGPM+HGSRYHRRPGSMG + NRV KGK+L G MG VT+Q LEI++VD E Sbjct: 123 IKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKGKKLAGRMGGDQVTIQNLEIVQVDTE 182 Query: 182 RNVLLVKGAIPGPKNSFVKVKETVK 206 RN+LLVKG +PG K S V V+ VK Sbjct: 183 RNLLLVKGNVPGAKKSLVVVQGAVK 207 >ref|NP_466155.1| ribosomal protein L3 [Listeria monocytogenes EGD-e] sp|Q8Y440|RL3_LISMO 50S ribosomal protein L3 pir||AH1403 ribosomal protein L3 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00710.1| ribosomal protein L3 [Listeria monocytogenes] Length = 209 Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 133/205 (64%), Positives = 158/205 (77%) Query: 2 KGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 KGILG+K+GMTQVFT G +I V+VIEA VVLQKK + DGYEAVQ+GF DK+ SN Sbjct: 3 KGILGRKVGMTQVFTENGELIPVTVIEAAQNVVLQKKTVETDGYEAVQIGFEDKRAILSN 62 Query: 62 KPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQGV 121 KPEQGH KAN TPKR++RE R V+L E+G E+K D+F EG+ +D TG +KGKGFQGV Sbjct: 63 KPEQGHVAKANTTPKRFIREFRDVNLDEYEIGAEVKVDVFAEGDIIDATGVSKGKGFQGV 122 Query: 122 IKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDVE 181 IKR GQSRGPMAHGSRYHRRPGSMG + NRV K K LPG MG +T+Q LEI+KVDVE Sbjct: 123 IKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKLLPGRMGGEQITIQNLEIVKVDVE 182 Query: 182 RNVLLVKGAIPGPKNSFVKVKETVK 206 +NVLLVKG +PG K + V++K K Sbjct: 183 KNVLLVKGNVPGAKKALVQIKTATK 207 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 309,360,678 Number of extensions: 12678972 Number of successful extensions: 21638 Number of sequences better than 1.0e-05: 735 Number of HSP's gapped: 20783 Number of HSP's successfully gapped: 735 Length of query: 207 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 87 Effective length of database: 431,425,698 Effective search space: 37534035726 Effective search space used: 37534035726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 123 (52.0 bits)