BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0059.p (110 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_842683.1| ribosomal protein L22 [Bacillus anthracis str. ... 186 2e-46 ref|NP_654060.1| Ribosomal_L22, Ribosomal protein L22p/L17e [Bac... 184 5e-46 ref|NP_976443.1| ribosomal protein L22 [Bacillus cereus ATCC 109... 184 5e-46 ref|NP_830016.1| LSU ribosomal protein L22P [Bacillus cereus ATC... 184 6e-46 ref|NP_241005.1| 50S ribosomal protein L22; ribosomal protein L2... 180 1e-44 >ref|NP_842683.1| ribosomal protein L22 [Bacillus anthracis str. Ames] gb|AAP24169.1| ribosomal protein L22 [Bacillus anthracis str. Ames] Length = 113 Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/110 (80%), Positives = 102/110 (92%) Query: 1 MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60 M+AKA AR+VRI+ RK +LVVDLIRGKQVGEAIAIL HTPK+ASPVVEK+L SAIANAEH Sbjct: 1 MQAKAVARTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEH 60 Query: 61 NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110 NY MD+NSL V +VFV++GPT+KRFRPRAMGRAS+INKRTSHIT+VVSEK Sbjct: 61 NYEMDINSLVVEKVFVDEGPTLKRFRPRAMGRASQINKRTSHITVVVSEK 110 >ref|NP_654060.1| Ribosomal_L22, Ribosomal protein L22p/L17e [Bacillus anthracis A2012] Length = 113 Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 89/110 (80%), Positives = 101/110 (91%) Query: 1 MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60 M AKA AR+VRI+ RK +LVVDLIRGKQVGEAIAIL HTPK+ASPVVEK+L SAIANAEH Sbjct: 1 MXAKAVARTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEH 60 Query: 61 NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110 NY MD+NSL V +VFV++GPT+KRFRPRAMGRAS+INKRTSHIT+VVSEK Sbjct: 61 NYEMDINSLVVEKVFVDEGPTLKRFRPRAMGRASQINKRTSHITVVVSEK 110 >ref|NP_976443.1| ribosomal protein L22 [Bacillus cereus ATCC 10987] gb|AAS39051.1| ribosomal protein L22 [Bacillus cereus ATCC 10987] Length = 113 Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 88/110 (80%), Positives = 102/110 (92%) Query: 1 MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60 M+AKA AR+VRI+ RK +LVVDLIRGKQVGEAIAIL HTPK+ASPVVEK+L SAIANAEH Sbjct: 1 MQAKAVARTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEH 60 Query: 61 NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110 NY MD+N+L V +VFV++GPT+KRFRPRAMGRAS+INKRTSHIT+VVSEK Sbjct: 61 NYEMDINNLVVEKVFVDEGPTLKRFRPRAMGRASQINKRTSHITVVVSEK 110 >ref|NP_830016.1| LSU ribosomal protein L22P [Bacillus cereus ATCC 14579] gb|AAP07217.1| LSU ribosomal protein L22P [Bacillus cereus ATCC 14579] Length = 119 Score = 184 bits (466), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 88/110 (80%), Positives = 102/110 (92%) Query: 1 MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60 M+AKA AR+VRI+ RK +LVVDLIRGKQVGEAIAIL HTPK+ASPVVEK+L SAIANAEH Sbjct: 7 MQAKAVARTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEH 66 Query: 61 NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110 NY MD+N+L V +VFV++GPT+KRFRPRAMGRAS+INKRTSHIT+VVSEK Sbjct: 67 NYEMDINNLVVEKVFVDEGPTLKRFRPRAMGRASQINKRTSHITVVVSEK 116 >ref|NP_241005.1| 50S ribosomal protein L22; ribosomal protein L22 (BL17) [Bacillus halodurans] sp|Q9Z9K9|RL22_BACHD 50S ribosomal protein L22 pir||T44388 ribosomal protein L22 (BL17) rplV [imported] - Bacillus halodurans (strain C-125) dbj|BAA75276.1| rplV homologue (identity of 87% to B. subtilis ) [Bacillus halodurans] dbj|BAB03858.1| 50S ribosomal protein L22 [Bacillus halodurans] Length = 113 Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 84/110 (76%), Positives = 102/110 (92%) Query: 1 MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60 M+AKA A+ VRI+ RKA+LV+DLIRGKQVGEAIAIL+HTPK+ASP++EK+LNSAIANAEH Sbjct: 1 MQAKAVAKQVRIAPRKARLVIDLIRGKQVGEAIAILKHTPKAASPIIEKVLNSAIANAEH 60 Query: 61 NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110 NY M+ N+L +SE FV++G T+KRFRPRAMGRASRINKRTSHIT+VV+EK Sbjct: 61 NYEMEPNNLVISEAFVDEGVTLKRFRPRAMGRASRINKRTSHITIVVTEK 110 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.128 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 126,838,317 Number of extensions: 3896665 Number of successful extensions: 11700 Number of sequences better than 1.0e-05: 586 Number of HSP's gapped: 11666 Number of HSP's successfully gapped: 586 Length of query: 110 Length of database: 757,237,578 Length adjustment: 76 Effective length of query: 34 Effective length of database: 550,890,054 Effective search space: 18730261836 Effective search space used: 18730261836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)