BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0057.p (128 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388004.1| ribosomal protein L16 [Bacillus subtilis] >gi|1... 218 4e-56 ref|NP_241007.1| 50S ribosomal protein L16; ribosomal protein L1... 216 1e-55 ref|NP_691047.1| 50S ribosomal protein L16 [Oceanobacillus iheye... 215 3e-55 ref|NP_830018.1| LSU ribosomal protein L16P [Bacillus cereus ATC... 209 2e-53 ref|NP_976445.1| ribosomal protein L16 [Bacillus cereus ATCC 109... 209 2e-53 >ref|NP_388004.1| ribosomal protein L16 [Bacillus subtilis] sp|P14577|RL16_BACSU 50S ribosomal protein L16 pir||B69696 ribosomal protein L16 (rplP) - Bacillus subtilis emb|CAB11899.1| ribosomal protein L16 [Bacillus subtilis subsp. subtilis str. 168] Length = 144 Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 104/128 (81%), Positives = 119/128 (92%) Query: 1 MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60 M+G AKGGTE++FGEFG+QALE SWITNRQIEAARIAMTRY+KRGG+VWIKIFP KP T Sbjct: 17 MRGRAKGGTEVHFGEFGIQALEASWITNRQIEAARIAMTRYMKRGGKVWIKIFPSKPYTA 76 Query: 61 KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120 KPLEVRMGSGKG E WVAVVKPGK++FE+ GVSEE+AREA+RLA+HKLP+KTKFVKREE Sbjct: 77 KPLEVRMGSGKGAPEGWVAVVKPGKVLFEISGVSEEVAREALRLASHKLPIKTKFVKREE 136 Query: 121 LGGEANES 128 +GGE+NES Sbjct: 137 IGGESNES 144 >ref|NP_241007.1| 50S ribosomal protein L16; ribosomal protein L16 [Bacillus halodurans] sp|Q9Z9K7|RL16_BACHD 50S ribosomal protein L16 pir||T44390 ribosomal protein L16 rplP [imported] - Bacillus halodurans (strain C-125) dbj|BAA75278.1| rplP homologue (identity of 92% to B. subtilis ) [Bacillus halodurans] dbj|BAB03860.1| 50S ribosomal protein L16 [Bacillus halodurans] Length = 144 Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 104/128 (81%), Positives = 118/128 (92%) Query: 1 MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60 M+G AKGGTE++FGE+GLQALE SWITNRQIEAARIAMTRY+KRGG+VWIKIFP KP T Sbjct: 17 MRGRAKGGTEVHFGEYGLQALEASWITNRQIEAARIAMTRYMKRGGKVWIKIFPSKPYTA 76 Query: 61 KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120 KPLEVRMGSGKG E WVAVVKPGK+MFE+ GVSEE+AREA+RLA+HKLPVK KFVKREE Sbjct: 77 KPLEVRMGSGKGAPEGWVAVVKPGKVMFEISGVSEEVAREALRLASHKLPVKCKFVKREE 136 Query: 121 LGGEANES 128 +GG+ANE+ Sbjct: 137 VGGDANEN 144 >ref|NP_691047.1| 50S ribosomal protein L16 [Oceanobacillus iheyensis HTE831] dbj|BAC12082.1| 50S ribosomal protein L16 [Oceanobacillus iheyensis HTE831] Length = 144 Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 104/127 (81%), Positives = 116/127 (91%) Query: 1 MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60 M+G AKGGT + FGE+GLQA E SWIT+RQIEAARIAMTRY+KRGG+VWIKIFPDKP T Sbjct: 17 MRGQAKGGTTVAFGEYGLQATEASWITSRQIEAARIAMTRYMKRGGKVWIKIFPDKPYTA 76 Query: 61 KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120 KPLEVRMGSGKG E WVAVVKPGKIMFE+ GVSEE+AREA+RLA+HKLPVKTKFVKREE Sbjct: 77 KPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLASHKLPVKTKFVKREE 136 Query: 121 LGGEANE 127 +GGE+NE Sbjct: 137 IGGESNE 143 >ref|NP_830018.1| LSU ribosomal protein L16P [Bacillus cereus ATCC 14579] ref|NP_842685.1| ribosomal protein L16 [Bacillus anthracis str. Ames] gb|AAP07219.1| LSU ribosomal protein L16P [Bacillus cereus ATCC 14579] gb|AAP24171.1| ribosomal protein L16 [Bacillus anthracis str. Ames] Length = 144 Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/128 (81%), Positives = 113/128 (88%) Query: 1 MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60 M+G AKGGTE+ FGEFGLQA SWITNRQIEAAR AMTRY+KRGG+VWIKIFP KP T Sbjct: 17 MRGRAKGGTEIAFGEFGLQAQAASWITNRQIEAARRAMTRYMKRGGKVWIKIFPSKPYTA 76 Query: 61 KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120 KPLEVRMGSGKG E WVAVVKPGKIMFE+ GVSEE+AREA+RLAAHKLPVK KFVKREE Sbjct: 77 KPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAHKLPVKCKFVKREE 136 Query: 121 LGGEANES 128 GGE+NE+ Sbjct: 137 NGGESNEN 144 >ref|NP_976445.1| ribosomal protein L16 [Bacillus cereus ATCC 10987] gb|AAS39053.1| ribosomal protein L16 [Bacillus cereus ATCC 10987] Length = 144 Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/128 (81%), Positives = 113/128 (88%) Query: 1 MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60 M+G AKGGTE+ FGEFGLQA SWITNRQIEAAR AMTRY+KRGG+VWIKIFP KP T Sbjct: 17 MRGRAKGGTEVAFGEFGLQAQAASWITNRQIEAARRAMTRYMKRGGKVWIKIFPSKPYTA 76 Query: 61 KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120 KPLEVRMGSGKG E WVAVVKPGKIMFE+ GVSEE+AREA+RLAAHKLPVK KFVKREE Sbjct: 77 KPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAHKLPVKCKFVKREE 136 Query: 121 LGGEANES 128 GGE+NE+ Sbjct: 137 NGGESNEN 144 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 196,033,744 Number of extensions: 7240755 Number of successful extensions: 30281 Number of sequences better than 1.0e-05: 700 Number of HSP's gapped: 30229 Number of HSP's successfully gapped: 700 Length of query: 128 Length of database: 757,237,578 Length adjustment: 91 Effective length of query: 37 Effective length of database: 510,163,569 Effective search space: 18876052053 Effective search space used: 18876052053 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)