BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0055.p
         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB06808.1| ribosomal protein L17                                  133   1e-30
ref|NP_388006.1| ribosomal protein S17 (BS16) [Bacillus subtilis...   132   3e-30
ref|NP_842687.1| ribosomal protein S17 [Bacillus anthracis str. ...   129   2e-29
pir||S17865 ribosomal protein S17 - Bacillus stearothermophilus ...   128   5e-29
sp|P23828|RS17_BACST 30S ribosomal protein S17 (BS16)                 128   5e-29

>gb|AAB06808.1| ribosomal protein L17
          Length = 89

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 75/89 (84%), Gaps = 1/89 (1%)

Query: 1  MSE-ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIG 59
          MSE ERN RKV  G+VVSDKMDKTI + VETYKKH LY KR+K +KKFKAHDE N AKIG
Sbjct: 1  MSECERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSKKFKAHDENNQAKIG 60

Query: 60 DIVKVMETRPLSKDKRWRLVEVVEAAVII 88
          DIVK+METRPLS  KR+RLVEVVE AVII
Sbjct: 61 DIVKIMETRPLSATKRFRLVEVVEEAVII 89


>ref|NP_388006.1| ribosomal protein S17 (BS16) [Bacillus subtilis]
 sp|P12874|RS17_BACSU 30S ribosomal protein S17 (BS16)
 pir||R3BS17 ribosomal protein S17 - Bacillus subtilis
 emb|CAA33700.1| unnamed protein product [Bacillus subtilis]
 emb|CAB11901.1| ribosomal protein S17 (BS16) [Bacillus subtilis subsp. subtilis
          str. 168]
          Length = 87

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 72/85 (84%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ERN RKV  G+VVSDKMDKTI + VETYKKH LY KR+K +KKFKAHDE N AKIGDIVK
Sbjct: 3  ERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSKKFKAHDENNQAKIGDIVK 62

Query: 64 VMETRPLSKDKRWRLVEVVEAAVII 88
          +METRPLS  KR+RLVEVVE AVII
Sbjct: 63 IMETRPLSATKRFRLVEVVEEAVII 87


>ref|NP_842687.1| ribosomal protein S17 [Bacillus anthracis str. Ames]
 ref|NP_976447.1| ribosomal protein S17 [Bacillus cereus ATCC 10987]
 gb|AAP24173.1| ribosomal protein S17 [Bacillus anthracis str. Ames]
 gb|AAS39055.1| ribosomal protein S17 [Bacillus cereus ATCC 10987]
          Length = 87

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 73/85 (85%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ERN RKV  G+VVSDKMDKTI + VETYK H+LY KR+K +KK+KAHDE+N AK+GDIVK
Sbjct: 3  ERNQRKVYTGRVVSDKMDKTITVLVETYKTHSLYGKRVKYSKKYKAHDEQNQAKLGDIVK 62

Query: 64 VMETRPLSKDKRWRLVEVVEAAVII 88
          +METRPLS  KR+RLVE+VE AVII
Sbjct: 63 IMETRPLSATKRFRLVEIVEEAVII 87


>pir||S17865 ribosomal protein S17 - Bacillus stearothermophilus
 gb|AAB21179.1| ribosomal protein S17 [Bacillus stearothermophilus, Peptide, 86
          aa]
          Length = 86

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 73/85 (85%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ERN RKV +G+VVSDKMDKTI + VETYKKH LY KR+K +KK+KAHDE N AK+GDIVK
Sbjct: 2  ERNQRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVK 61

Query: 64 VMETRPLSKDKRWRLVEVVEAAVII 88
          +METRPLS  KR+RLVE+VE AV++
Sbjct: 62 IMETRPLSATKRFRLVEIVEKAVVL 86


>sp|P23828|RS17_BACST 30S ribosomal protein S17 (BS16)
          Length = 87

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 73/85 (85%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ERN RKV +G+VVSDKMDKTI + VETYKKH LY KR+K +KK+KAHDE N AK+GDIVK
Sbjct: 3  ERNQRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVK 62

Query: 64 VMETRPLSKDKRWRLVEVVEAAVII 88
          +METRPLS  KR+RLVE+VE AV++
Sbjct: 63 IMETRPLSATKRFRLVEIVEKAVVL 87


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.131    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 110,985,141
Number of extensions: 3555533
Number of successful extensions: 14908
Number of sequences better than 1.0e-05: 528
Number of HSP's gapped: 14952
Number of HSP's successfully gapped: 528
Length of query: 88
Length of database: 757,237,578
Length adjustment: 57
Effective length of query: 31
Effective length of database: 602,476,935
Effective search space: 18676784985
Effective search space used: 18676784985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)