BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0051.p (130 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P12879|RS8_BACSU 30S ribosomal protein S8 (BS8) >gi|1044978|g... 224 5e-58 ref|ZP_00182613.1| hypothetical protein Exigu205401 [Exiguobacte... 223 1e-57 ref|NP_241014.1| 30S ribosomal protein S8; ribosomal protein S8 ... 221 3e-57 ref|NP_654067.1| Ribosomal_S8, Ribosomal protein S8 [Bacillus an... 220 9e-57 ref|NP_388011.1| ribosomal protein S8 (BS8) [Bacillus subtilis] ... 218 5e-56 >sp|P12879|RS8_BACSU 30S ribosomal protein S8 (BS8) gb|AAB06813.1| ribosomal protein S8 Length = 132 Score = 224 bits (571), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 104/130 (80%), Positives = 119/130 (91%) Query: 1 MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60 M+DPIADMLTRIRNAN VRHE +E+PAS +K++IA+ILKREGFIRD EFVEDSKQGIIR+ Sbjct: 3 MTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRV 62 Query: 61 FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120 FLKYG N ERVI+GLKRISKPGLRVY KSNEVPRVL GLGIAIISTS+GV+TDKEAR + Sbjct: 63 FLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQ 122 Query: 121 SGGEVVCYIW 130 +GGEV+ Y+W Sbjct: 123 AGGEVLAYVW 132 >ref|ZP_00182613.1| hypothetical protein Exigu205401 [Exiguobacterium sp. 255-15] Length = 132 Score = 223 bits (567), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 101/130 (77%), Positives = 120/130 (92%) Query: 1 MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60 M+DPIADMLTRIRNAN VRHE +EMPAST+K+++A+ILKREGFIRD E++EDSKQG +R+ Sbjct: 3 MTDPIADMLTRIRNANMVRHEKLEMPASTIKREVAEILKREGFIRDVEYLEDSKQGTLRV 62 Query: 61 FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120 FLKYG + ERVI+GLKRISKPGLRVY K++E+P+VLGGLGIAI+STSKGVMTDKEARQ K Sbjct: 63 FLKYGASNERVITGLKRISKPGLRVYAKADEIPKVLGGLGIAIVSTSKGVMTDKEARQQK 122 Query: 121 SGGEVVCYIW 130 GGEV+ YIW Sbjct: 123 VGGEVIAYIW 132 >ref|NP_241014.1| 30S ribosomal protein S8; ribosomal protein S8 (BS8) [Bacillus halodurans] sp|Q9Z9K0|RS8_BACHD 30S ribosomal protein S8 pir||T44397 ribosomal protein S8 (BS8) rpsH [imported] - Bacillus halodurans (strain C-125) dbj|BAA75285.1| rpsH homologue (identity of 82% to B. subtilis ) [Bacillus halodurans] dbj|BAB03867.1| 30S ribosomal protein S8 [Bacillus halodurans] Length = 132 Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 102/130 (78%), Positives = 120/130 (92%) Query: 1 MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60 M+DPI+DMLTRIRNANTVRHE +E+PAS +KK+IA+ILKREGFIRD E++EDSKQG+IRI Sbjct: 3 MTDPISDMLTRIRNANTVRHEKLELPASKIKKEIAEILKREGFIRDYEYIEDSKQGVIRI 62 Query: 61 FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120 FLKYG + ERVI+GLKRISKPGLRVY K+ E+PRVLGGLGIAI+STSKGVMTDKEARQ + Sbjct: 63 FLKYGSSNERVITGLKRISKPGLRVYAKAGELPRVLGGLGIAIVSTSKGVMTDKEARQQQ 122 Query: 121 SGGEVVCYIW 130 GGEV+ Y+W Sbjct: 123 VGGEVLAYVW 132 >ref|NP_654067.1| Ribosomal_S8, Ribosomal protein S8 [Bacillus anthracis A2012] ref|NP_830025.1| SSU ribosomal protein S8P [Bacillus cereus ATCC 14579] ref|NP_842692.1| ribosomal protein S8 [Bacillus anthracis str. Ames] ref|NP_976452.1| ribosomal protein S8 [Bacillus cereus ATCC 10987] sp|Q81J28|RS8_BACCR 30S ribosomal protein S8 sp|Q81VR6|RS8_BACAA 30S ribosomal protein S8 gb|AAP07226.1| SSU ribosomal protein S8P [Bacillus cereus ATCC 14579] gb|AAP24178.1| ribosomal protein S8 [Bacillus anthracis str. Ames] gb|AAS39060.1| ribosomal protein S8 [Bacillus cereus ATCC 10987] Length = 132 Score = 220 bits (560), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 100/130 (76%), Positives = 120/130 (92%) Query: 1 MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60 M+DPIADMLTRIRNAN VRHE +E+PAS +KK+IA++LKREGFIRD E++ED+KQGI+RI Sbjct: 3 MTDPIADMLTRIRNANMVRHEKLEVPASKIKKEIAELLKREGFIRDVEYIEDNKQGILRI 62 Query: 61 FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120 FLKYG N ERVI+GLKRISKPGLRVY K++EVPRVL GLGIA++STSKGVMTDK+ARQ + Sbjct: 63 FLKYGANNERVITGLKRISKPGLRVYAKADEVPRVLNGLGIALVSTSKGVMTDKDARQLQ 122 Query: 121 SGGEVVCYIW 130 +GGEVV Y+W Sbjct: 123 TGGEVVAYVW 132 >ref|NP_388011.1| ribosomal protein S8 (BS8) [Bacillus subtilis] pir||G69699 ribosomal protein S8 - Bacillus subtilis dbj|BAA10980.1| ribosomal protein S8 [Bacillus subtilis] emb|CAB11906.1| ribosomal protein S8 (BS8) [Bacillus subtilis subsp. subtilis str. 168] Length = 132 Score = 218 bits (554), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 102/130 (78%), Positives = 117/130 (90%) Query: 1 MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60 M+DPIADMLTRIRNAN VRHE +E+PAS +K++I +ILKREGFIRD EFVEDSKQGIIR+ Sbjct: 3 MTDPIADMLTRIRNANMVRHEKLEIPASKLKREIPEILKREGFIRDVEFVEDSKQGIIRV 62 Query: 61 FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120 LKYG N ERVI+GLKRISKPGLRVY KSNEVPRVL GLGIAIISTS+GV+TDKEAR + Sbjct: 63 SLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQ 122 Query: 121 SGGEVVCYIW 130 +GGEV+ Y+W Sbjct: 123 AGGEVLAYVW 132 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 175,687,318 Number of extensions: 6344785 Number of successful extensions: 17838 Number of sequences better than 1.0e-05: 665 Number of HSP's gapped: 17427 Number of HSP's successfully gapped: 667 Length of query: 130 Length of database: 757,237,578 Length adjustment: 93 Effective length of query: 37 Effective length of database: 504,733,371 Effective search space: 18675134727 Effective search space used: 18675134727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)