BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0049.p (122 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P46899|RL18_BACSU 50S ribosomal protein L18 >gi|1044980|gb|AA... 179 2e-44 ref|NP_388013.1| ribosomal protein L18 [Bacillus subtilis] >gi|7... 178 4e-44 ref|NP_241016.1| 50S ribosomal protein L18; ribosomal protein L1... 174 4e-43 ref|ZP_00036068.1| COG0256: Ribosomal protein L18 [Enterococcus ... 174 6e-43 ref|NP_654069.1| Ribosomal_L18p, Ribosomal L18p/L5e family [Baci... 173 1e-42 >sp|P46899|RL18_BACSU 50S ribosomal protein L18 gb|AAB06815.1| ribosomal protein L18 Length = 120 Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/122 (72%), Positives = 103/122 (84%), Gaps = 2/122 (1%) Query: 1 MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60 MITK KN ARLKRH RVR K+ GTAERPRLNVFRS+KHIYAQ+IDDV GVT+ SASTLD Sbjct: 1 MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLD 60 Query: 61 KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120 KDL+ + + G AA KVG+L+A+RA EKG + VVFDRGGYLYHGR++ALADAAREAGL Sbjct: 61 KDLN--VESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGL 118 Query: 121 EF 122 +F Sbjct: 119 KF 120 >ref|NP_388013.1| ribosomal protein L18 [Bacillus subtilis] pir||D69696 ribosomal protein L18 rplR - Bacillus subtilis dbj|BAA10982.1| ribosomal protein L18 [Bacillus subtilis] emb|CAB11908.1| ribosomal protein L18 [Bacillus subtilis subsp. subtilis str. 168] Length = 120 Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/122 (72%), Positives = 102/122 (83%), Gaps = 2/122 (1%) Query: 1 MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60 MITK KN ARLKRH RVR K+ GTAERPRLNVFRS KHIYAQ+IDDV GVT+ SASTLD Sbjct: 1 MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSYKHIYAQIIDDVNGVTLASASTLD 60 Query: 61 KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120 KDL+ + + G AA KVG+L+A+RA EKG + VVFDRGGYLYHGR++ALADAAREAGL Sbjct: 61 KDLN--VESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGL 118 Query: 121 EF 122 +F Sbjct: 119 KF 120 >ref|NP_241016.1| 50S ribosomal protein L18; ribosomal protein L18 [Bacillus halodurans] sp|Q9Z9J8|RL18_BACHD 50S ribosomal protein L18 pir||T44399 ribosomal protein L18 rplR [imported] - Bacillus halodurans (strain C-125) dbj|BAA75287.1| rplR homologue (identity of 73% to B. subtilis ) [Bacillus halodurans] dbj|BAB03869.1| 50S ribosomal protein L18 [Bacillus halodurans] Length = 120 Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 86/122 (70%), Positives = 102/122 (83%), Gaps = 2/122 (1%) Query: 1 MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60 MITK KN AR KRH VR+ I GT ERPRLNVFRSSKHIYAQLIDDV GVT+ +AS+LD Sbjct: 1 MITKPIKNVARKKRHAHVRRTITGTPERPRLNVFRSSKHIYAQLIDDVNGVTVAAASSLD 60 Query: 61 KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120 K+L + NGG+VEAA KVG+L+A+RA EKG+ +VFDRGGY+YHGR+ +LADAAREAGL Sbjct: 61 KELK--LENGGNVEAAKKVGELVAKRALEKGYKTIVFDRGGYVYHGRVASLADAAREAGL 118 Query: 121 EF 122 +F Sbjct: 119 QF 120 >ref|ZP_00036068.1| COG0256: Ribosomal protein L18 [Enterococcus faecium] Length = 121 Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 88/122 (72%), Positives = 99/122 (81%), Gaps = 4/122 (3%) Query: 1 MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60 +ITK DKNK R KRH RVR I GTAERPRLNVFRS+K+IYAQ+IDDV GVT+ SASTLD Sbjct: 4 VITKPDKNKTRQKRHRRVRNNISGTAERPRLNVFRSNKNIYAQIIDDVAGVTLASASTLD 63 Query: 61 KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120 K++S G EAA VG+L+AERA EKG VVVFDRGGYLYHGR+QALA+AARE GL Sbjct: 64 KEISG----GTKTEAAQAVGKLVAERAAEKGIKVVVFDRGGYLYHGRVQALAEAARENGL 119 Query: 121 EF 122 EF Sbjct: 120 EF 121 >ref|NP_654069.1| Ribosomal_L18p, Ribosomal L18p/L5e family [Bacillus anthracis A2012] ref|NP_830027.1| LSU ribosomal protein L18P [Bacillus cereus ATCC 14579] ref|NP_842694.1| ribosomal protein L18 [Bacillus anthracis str. Ames] ref|NP_976454.1| ribosomal protein L18 [Bacillus cereus ATCC 10987] gb|AAP07228.1| LSU ribosomal protein L18P [Bacillus cereus ATCC 14579] gb|AAP24180.1| ribosomal protein L18 [Bacillus anthracis str. Ames] gb|AAS39062.1| ribosomal protein L18 [Bacillus cereus ATCC 10987] Length = 120 Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 86/122 (70%), Positives = 102/122 (83%), Gaps = 2/122 (1%) Query: 1 MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60 MITK DKN R KRH RVR K+ GTAERPRLNVFRS++HIYAQ+IDDV GVT+VSASTLD Sbjct: 1 MITKADKNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLD 60 Query: 61 KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120 KDL+ + ++EAA KVG+ +A+RA EKG VVFDRGGYLYHGR++ALA+AAREAGL Sbjct: 61 KDLA--LNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGL 118 Query: 121 EF 122 +F Sbjct: 119 QF 120 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 158,134,103 Number of extensions: 5396802 Number of successful extensions: 22475 Number of sequences better than 1.0e-05: 593 Number of HSP's gapped: 22033 Number of HSP's successfully gapped: 593 Length of query: 122 Length of database: 757,237,578 Length adjustment: 86 Effective length of query: 36 Effective length of database: 523,739,064 Effective search space: 18854606304 Effective search space used: 18854606304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)