BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0048.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241017.1| 30S ribosomal protein S5; ribosomal protein S5 ... 253 1e-66 ref|NP_830028.1| SSU ribosomal protein S5P [Bacillus cereus ATCC... 250 1e-65 ref|NP_654070.1| Ribosomal_S5, Ribosomal protein S5 [Bacillus an... 249 1e-65 ref|NP_388014.1| ribosomal protein S5 [Bacillus subtilis] >gi|11... 247 7e-65 sp|P02357|RS5_BACST 30S ribosomal protein S5 (BS5) (BS6) >gi|708... 244 4e-64 >ref|NP_241017.1| 30S ribosomal protein S5; ribosomal protein S5 [Bacillus halodurans] sp|Q9Z9J7|RS5_BACHD 30S ribosomal protein S5 pir||T44400 ribosomal protein S5 rpsE [imported] - Bacillus halodurans (strain C-125) dbj|BAA75288.1| rpsE homologue (identity of 88% to B. subtilis ) [Bacillus halodurans] dbj|BAB03870.1| 30S ribosomal protein S5 [Bacillus halodurans] Length = 166 Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 129/164 (78%), Positives = 146/164 (89%) Query: 2 RIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIRK 61 RIDPN+LEL E+VV INRVAKVVKGGRRF F+ALVVVGD NG VG G+GKA EVP+AIRK Sbjct: 3 RIDPNTLELEEKVVAINRVAKVVKGGRRFRFAALVVVGDKNGRVGFGMGKAQEVPEAIRK 62 Query: 62 GIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVGD 121 +EDAKKNLI +PIVGT+IPH + G FGAGRVLLKPASEGTGVIAGGPVRAVL+LAGVGD Sbjct: 63 AVEDAKKNLIEVPIVGTTIPHEIVGRFGAGRVLLKPASEGTGVIAGGPVRAVLDLAGVGD 122 Query: 122 ILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 IL+KSLGS+N +NMV AT++GL LKR E+VAKLRGK+VEEL G Sbjct: 123 ILSKSLGSNNPINMVRATVKGLQELKRAEDVAKLRGKTVEELLG 166 >ref|NP_830028.1| SSU ribosomal protein S5P [Bacillus cereus ATCC 14579] sp|Q81J25|RS5_BACCR 30S ribosomal protein S5 gb|AAP07229.1| SSU ribosomal protein S5P [Bacillus cereus ATCC 14579] Length = 167 Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 128/164 (78%), Positives = 142/164 (86%) Query: 2 RIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIRK 61 RIDP+ LEL ERVV INRVAKVVKGGRRF F+ALVVVGD NG+VG G GKA EVPDAIRK Sbjct: 4 RIDPSKLELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRK 63 Query: 62 GIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVGD 121 IEDAKKNLI +P+VGT+IPH + GHFGAG V LKPA+EGTGVIAGGPVRAVLELAGV D Sbjct: 64 AIEDAKKNLIAVPLVGTTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQD 123 Query: 122 ILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 IL+KSLGS+ +NM+ AT+ GLS LKR E+VAKLRGKSVEEL G Sbjct: 124 ILSKSLGSNTPINMIRATVNGLSELKRAEDVAKLRGKSVEELLG 167 >ref|NP_654070.1| Ribosomal_S5, Ribosomal protein S5 [Bacillus anthracis A2012] ref|NP_842695.1| ribosomal protein S5 [Bacillus anthracis str. Ames] ref|NP_976455.1| ribosomal protein S5 [Bacillus cereus ATCC 10987] sp|Q81VR3|RS5_BACAA 30S ribosomal protein S5 gb|AAP24181.1| ribosomal protein S5 [Bacillus anthracis str. Ames] gb|AAS39063.1| ribosomal protein S5 [Bacillus cereus ATCC 10987] Length = 166 Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 128/164 (78%), Positives = 142/164 (86%) Query: 2 RIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIRK 61 RIDP+ LEL ERVV INRVAKVVKGGRRF F+ALVVVGD NG+VG G GKA EVPDAIRK Sbjct: 3 RIDPSKLELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRK 62 Query: 62 GIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVGD 121 IEDAKKNLI +P+VGT+IPH + GHFGAG V LKPA+EGTGVIAGGPVRAVLELAGV D Sbjct: 63 AIEDAKKNLIAVPLVGTTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQD 122 Query: 122 ILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 IL+KSLGS+ +NM+ AT+ GLS LKR E+VAKLRGKSVEEL G Sbjct: 123 ILSKSLGSNTPINMIRATVNGLSELKRAEDVAKLRGKSVEELLG 166 >ref|NP_388014.1| ribosomal protein S5 [Bacillus subtilis] sp|P21467|RS5_BACSU 30S ribosomal protein S5 (BS5) pir||R3BS5S ribosomal protein S5 - Bacillus subtilis gb|AAB06816.1| ribosomal protein S5 emb|CAB11909.1| ribosomal protein S5 [Bacillus subtilis subsp. subtilis str. 168] Length = 166 Score = 247 bits (630), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 125/164 (76%), Positives = 143/164 (87%) Query: 2 RIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIRK 61 RIDP+ LEL ER+V +NRVAKVVKGGRRF F+ALVVVGD NG+VG G GKA EVP+AIRK Sbjct: 3 RIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRK 62 Query: 62 GIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVGD 121 +EDAKKNLI +P+VGT+IPH + G FGAG +LLKPASEGTGVIAGGPVRAVLELAGV D Sbjct: 63 AVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVAD 122 Query: 122 ILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 IL+KSLGS+ +NM+ ATL+GLS LKR E+VAKLRGKSVEEL G Sbjct: 123 ILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKSVEELLG 166 >sp|P02357|RS5_BACST 30S ribosomal protein S5 (BS5) (BS6) pir||R3BS5F ribosomal protein S5 - Bacillus stearothermophilus gb|AAA22699.1| ribosomal protein S5 Length = 166 Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 124/164 (75%), Positives = 141/164 (85%) Query: 2 RIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIRK 61 RI+PN LEL ERVV +NRVAKVVKGGRR FSALVVVGD NG+VG G GKA EVP+AIRK Sbjct: 3 RINPNKLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRK 62 Query: 62 GIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVGD 121 IEDAKKNLI +PIVGT+IPH V GHFGAG ++LKPASEGTGVIAGGP RAVLELAG+ D Sbjct: 63 AIEDAKKNLIEVPIVGTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISD 122 Query: 122 ILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 IL+KS+GS+ +NMV AT +GL +LKR E+VAKLRGK+VEEL G Sbjct: 123 ILSKSIGSNTPINMVRATFDGLKQLKRAEDVAKLRGKTVEELLG 166 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 243,012,550 Number of extensions: 10763606 Number of successful extensions: 34244 Number of sequences better than 1.0e-05: 779 Number of HSP's gapped: 33847 Number of HSP's successfully gapped: 781 Length of query: 165 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 49 Effective length of database: 442,286,094 Effective search space: 21672018606 Effective search space used: 21672018606 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)