BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0042.p
         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA24189.1| unnamed protein product [Bacillus halodurans]         111   4e-24
ref|NP_241023.1| BH0157~unknown [Bacillus halodurans] >gi|253705...   111   5e-24

>dbj|BAA24189.1| unnamed protein product [Bacillus halodurans]
          Length = 105

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 7  GSSPQIGQIVRILKGKDAGEAAVVIAVVDSRFVYIADGDKRKFDAPKKKNIQHLELIPFI 66
          G SP+IGQIV+I+KG+D  + +V+I  VD RFVYIADGDKRK D  K+KN+ HL+LI  I
Sbjct: 8  GPSPEIGQIVKIVKGRDRDQFSVIIKRVDDRFVYIADGDKRKVDRAKRKNMNHLKLIDHI 67

Query: 67 CSEIVDSLEETGRVTNGKLRFAVMKY 92
            E+  S EETG+VTNGKLRFA+ K+
Sbjct: 68 SPEVRHSFEETGKVTNGKLRFALKKF 93


>ref|NP_241023.1| BH0157~unknown [Bacillus halodurans]
 pir||E83669 hypothetical protein BH0157 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB03876.1| BH0157 [Bacillus halodurans]
          Length = 102

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 7  GSSPQIGQIVRILKGKDAGEAAVVIAVVDSRFVYIADGDKRKFDAPKKKNIQHLELIPFI 66
          G SP+IGQIV+I+KG+D  + +V+I  VD RFVYIADGDKRK D  K+KN+ HL+LI  I
Sbjct: 5  GPSPEIGQIVKIVKGRDRDQFSVIIKRVDDRFVYIADGDKRKVDRAKRKNMNHLKLIDHI 64

Query: 67 CSEIVDSLEETGRVTNGKLRFAVMKY 92
            E+  S EETG+VTNGKLRFA+ K+
Sbjct: 65 SPEVRHSFEETGKVTNGKLRFALKKF 90


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 155,226,323
Number of extensions: 5810678
Number of successful extensions: 12754
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 12757
Number of HSP's successfully gapped: 4
Length of query: 105
Length of database: 757,237,578
Length adjustment: 72
Effective length of query: 33
Effective length of database: 561,750,450
Effective search space: 18537764850
Effective search space used: 18537764850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)