BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0041.p (71 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241024.1| translation initiation factor IF-1 [Bacillus ha... 129 3e-29 ref|ZP_00182622.1| hypothetical protein Exigu206301 [Exiguobacte... 127 8e-29 ref|NP_710942.1| Translation initiation factor IF-1 [Leptospira ... 123 1e-27 ref|ZP_00036063.1| COG0361: Translation initiation factor 1 (IF-... 123 2e-27 ref|NP_388020.1| initiation factor IF-I [Bacillus subtilis] >gi|... 123 2e-27 >ref|NP_241024.1| translation initiation factor IF-1 [Bacillus halodurans] sp|O50630|IF1_BACHD Translation initiation factor IF-1 pir||T44406 translation initiation factor IF-1 infA [imported] - Bacillus halodurans (strain C-125) dbj|BAA24190.1| initiation factor IF-I [Bacillus halodurans] dbj|BAA75294.1| infA homologue (identity of 90% to B. subtilis ) [Bacillus halodurans] dbj|BAB03877.1| translation initiation factor IF-1 [Bacillus halodurans] Length = 72 Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 60/70 (85%), Positives = 67/70 (95%) Query: 1 VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60 +AKEDVIEVEGTVIEPLPNA F+VELENGH+ILAHVSGK+RMHFIRIL GDKV V+LSPY Sbjct: 1 MAKEDVIEVEGTVIEPLPNAMFRVELENGHKILAHVSGKIRMHFIRILPGDKVTVELSPY 60 Query: 61 DLSKGRITYR 70 DL++GRITYR Sbjct: 61 DLTRGRITYR 70 >ref|ZP_00182622.1| hypothetical protein Exigu206301 [Exiguobacterium sp. 255-15] Length = 72 Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 59/70 (84%), Positives = 66/70 (94%) Query: 1 VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60 +AK+DVIEVEGTVIEPLPNA FKVELENGH +LAHVSGK+RMHFIRIL GDKV V+LSPY Sbjct: 1 MAKQDVIEVEGTVIEPLPNAMFKVELENGHTVLAHVSGKIRMHFIRILPGDKVTVELSPY 60 Query: 61 DLSKGRITYR 70 DL++GRITYR Sbjct: 61 DLTRGRITYR 70 >ref|NP_710942.1| Translation initiation factor IF-1 [Leptospira interrogans serovar lai str. 56601] sp|Q9XD14|IF1_LEPIN Translation initiation factor IF-1 gb|AAD40605.1| initiation factor IF1 [Leptospira interrogans] gb|AAN47960.1| Translation initiation factor IF-1 [Leptospira interrogans serovar lai str. 56601] gb|AAS71404.1| translation initiation factor IF-1 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 72 Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 55/71 (77%), Positives = 66/71 (92%) Query: 1 VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60 +AKE+ I V+GTV+EPLPNA F+VELENGH++LAH+SGK+RMH+IRIL GDKV V+LSPY Sbjct: 1 MAKEEAITVDGTVLEPLPNAMFRVELENGHKVLAHISGKMRMHYIRILPGDKVTVELSPY 60 Query: 61 DLSKGRITYRK 71 DLSKGRITYRK Sbjct: 61 DLSKGRITYRK 71 >ref|ZP_00036063.1| COG0361: Translation initiation factor 1 (IF-1) [Enterococcus faecium] Length = 84 Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 57/70 (81%), Positives = 65/70 (92%) Query: 1 VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60 VAKED+IEVEGTV+E LPNA FKVELENGHQ+LA VSGK+RMH+IRIL GDKV V+LSPY Sbjct: 13 VAKEDMIEVEGTVVETLPNAMFKVELENGHQVLATVSGKIRMHYIRILPGDKVTVELSPY 72 Query: 61 DLSKGRITYR 70 DL++GRITYR Sbjct: 73 DLNRGRITYR 82 >ref|NP_388020.1| initiation factor IF-I [Bacillus subtilis] sp|P20458|IF1_BACSU Translation initiation factor IF-1 pir||F69644 translation initiation factor IF-1 - Bacillus subtilis gb|AAA22213.1| initiation factor 1 [Bacillus subtilis] gb|AAB06822.1| initiation factor IF-1 emb|CAB11915.1| initiation factor IF-I [Bacillus subtilis subsp. subtilis str. 168] Length = 72 Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 56/70 (80%), Positives = 65/70 (92%) Query: 1 VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60 +AK+DVIEVEGT++E LPNA FKVELENGH +LAHVSGK+RMHFIRIL GDKV V+LSPY Sbjct: 1 MAKDDVIEVEGTIVETLPNAMFKVELENGHTVLAHVSGKIRMHFIRILPGDKVTVELSPY 60 Query: 61 DLSKGRITYR 70 DL++GRITYR Sbjct: 61 DLTRGRITYR 70 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 103,156,938 Number of extensions: 3283979 Number of successful extensions: 8631 Number of sequences better than 1.0e-05: 453 Number of HSP's gapped: 8613 Number of HSP's successfully gapped: 453 Length of query: 71 Length of database: 757,237,578 Length adjustment: 42 Effective length of query: 29 Effective length of database: 643,203,420 Effective search space: 18652899180 Effective search space used: 18652899180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)