BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0039.p (122 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623806.1| Ribosomal protein S13 [Thermoanaerobacter tengc... 194 5e-49 ref|ZP_00180209.1| hypothetical protein Mther189601 [Moorella th... 194 6e-49 ref|ZP_00097958.1| COG0099: Ribosomal protein S13 [Desulfitobact... 192 2e-48 sp|P20282|RS13_BACSU 30S ribosomal protein S13 (BS14) >gi|104498... 191 4e-48 ref|NP_953877.1| ribosomal protein S13 [Geobacter sulfurreducens... 191 5e-48 >ref|NP_623806.1| Ribosomal protein S13 [Thermoanaerobacter tengcongensis] sp|Q8R7X9|RS13_THETN 30S ribosomal protein S13 gb|AAM25410.1| Ribosomal protein S13 [Thermoanaerobacter tengcongensis] Length = 122 Score = 194 bits (493), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 93/122 (76%), Positives = 113/122 (92%) Query: 1 MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60 MARIAGVDLPRDKRVEIALTYI+GIG++ S++IL + G++ +TRVRDLTEDEVSKLRE+I Sbjct: 1 MARIAGVDLPRDKRVEIALTYIYGIGRSRSKEILAKAGVNPDTRVRDLTEDEVSKLREII 60 Query: 61 DKSVKVEGDLRREISLNIKRLTEIGCYRGVRHRRGLPVRGQRTKTNARTRKGPRRTVANK 120 +K KVEGDLR+E+++NIKRL +IGCYRG+RH+ GLPVRGQRT+TNARTRKGPR+TVA K Sbjct: 61 EKEYKVEGDLRKEVAMNIKRLIDIGCYRGIRHKLGLPVRGQRTRTNARTRKGPRKTVAKK 120 Query: 121 KK 122 KK Sbjct: 121 KK 122 >ref|ZP_00180209.1| hypothetical protein Mther189601 [Moorella thermoacetica ATCC 39073] Length = 123 Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 96/122 (78%), Positives = 110/122 (90%) Query: 1 MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60 MARIAGVDLPRDKRVE+ALTYI+GIG+ S IL TG++ +TRVRDLTEDEV++LR+ I Sbjct: 1 MARIAGVDLPRDKRVEVALTYIYGIGRPKSNMILAATGVNPDTRVRDLTEDEVNRLRDYI 60 Query: 61 DKSVKVEGDLRREISLNIKRLTEIGCYRGVRHRRGLPVRGQRTKTNARTRKGPRRTVANK 120 DK+V VEGDLRRE+SLNIKRL EIGCYRG+RHRRGLPVRGQRTKTNARTRKGPRRTV + Sbjct: 61 DKNVVVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQRTKTNARTRKGPRRTVGVR 120 Query: 121 KK 122 +K Sbjct: 121 RK 122 >ref|ZP_00097958.1| COG0099: Ribosomal protein S13 [Desulfitobacterium hafniense] Length = 123 Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 93/122 (76%), Positives = 110/122 (90%) Query: 1 MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60 MARIAGVDLPR+KRVE+ LTYI+GIG T+QKIL TG++ TR+RDL+E+EV++LRE+I Sbjct: 1 MARIAGVDLPREKRVEVGLTYIYGIGLPTAQKILARTGVNPETRIRDLSEEEVNRLREVI 60 Query: 61 DKSVKVEGDLRREISLNIKRLTEIGCYRGVRHRRGLPVRGQRTKTNARTRKGPRRTVANK 120 DK +KVEGDLRRE+SLNIKRL EIGCYRG+RHRRGLPVRGQRTKTNARTRKGP +TV K Sbjct: 61 DKEIKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQRTKTNARTRKGPIKTVGAK 120 Query: 121 KK 122 +K Sbjct: 121 RK 122 >sp|P20282|RS13_BACSU 30S ribosomal protein S13 (BS14) gb|AAB06824.1| ribosomal protein S13 Length = 121 Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/122 (77%), Positives = 111/122 (90%), Gaps = 1/122 (0%) Query: 1 MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60 MARIAGVD+PRDKRV I+LTYIFGIG+TT+Q++L E G+ +TRVRDLTE+E+ K+R++I Sbjct: 1 MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDII 60 Query: 61 DKSVKVEGDLRREISLNIKRLTEIGCYRGVRHRRGLPVRGQRTKTNARTRKGPRRTVANK 120 DK +KVEGDLRRE+SLNIKRL EIG YRG+RHRRGLPVRGQ +K NARTRKGPRRTVANK Sbjct: 61 DK-LKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANK 119 Query: 121 KK 122 KK Sbjct: 120 KK 121 >ref|NP_953877.1| ribosomal protein S13 [Geobacter sulfurreducens PCA] gb|AAR36227.1| ribosomal protein S13 [Geobacter sulfurreducens PCA] Length = 122 Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 89/122 (72%), Positives = 111/122 (90%) Query: 1 MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKILNETGIDVNTRVRDLTEDEVSKLREMI 60 MARIAG+DLPR+KR+EIALTYIFGIG+TT+Q+IL ETG+ +TR +L E EV+K+R+ I Sbjct: 1 MARIAGIDLPRNKRIEIALTYIFGIGRTTAQRILAETGVSADTRTDNLAESEVAKIRDYI 60 Query: 61 DKSVKVEGDLRREISLNIKRLTEIGCYRGVRHRRGLPVRGQRTKTNARTRKGPRRTVANK 120 DK++KVEGDLRR++S++IKRL ++GCYRG+RHR+GLPVRGQRTKTNARTRKGP RTVA K Sbjct: 61 DKNLKVEGDLRRDVSMDIKRLMDLGCYRGLRHRKGLPVRGQRTKTNARTRKGPARTVAGK 120 Query: 121 KK 122 KK Sbjct: 121 KK 122 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 151,651,433 Number of extensions: 5246551 Number of successful extensions: 23895 Number of sequences better than 1.0e-05: 728 Number of HSP's gapped: 23630 Number of HSP's successfully gapped: 728 Length of query: 122 Length of database: 757,237,578 Length adjustment: 86 Effective length of query: 36 Effective length of database: 523,739,064 Effective search space: 18854606304 Effective search space used: 18854606304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)