BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0036.p (121 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241029.1| 50S ribosomal protein L17; ribosomal protein L1... 179 2e-44 ref|NP_830038.1| LSU ribosomal protein L17P [Bacillus cereus ATC... 174 6e-43 sp|P07843|RL17_BACST 50S ribosomal protein L17 (BL21) 171 4e-42 ref|ZP_00182626.1| hypothetical protein Exigu206701 [Exiguobacte... 170 1e-41 pir||R5BS17 ribosomal protein L17 - Bacillus stearothermophilus 169 2e-41 >ref|NP_241029.1| 50S ribosomal protein L17; ribosomal protein L17 [Bacillus halodurans] sp|O50635|RL17_BACHD 50S ribosomal protein L17 pir||T44411 ribosomal protein L17 rplQ [imported] - Bacillus halodurans (strain C-125) dbj|BAA75299.1| rplQ homologue (identity of 84% to B. subtilis ) [Bacillus halodurans] dbj|BAB03882.1| 50S ribosomal protein L17 [Bacillus halodurans] Length = 120 Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/120 (72%), Positives = 101/120 (84%), Gaps = 2/120 (1%) Query: 1 MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60 MAY KLGRDS+ARKAL RD+ TDL + ERI+TTEAKAKE+RS+ EK+IT K+GDLHARR Sbjct: 1 MAYAKLGRDSAARKALLRDLATDLIINERIETTEAKAKELRSVVEKMITLGKRGDLHARR 60 Query: 61 QVAAFVRRETVDGE--QDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELV 118 Q AAF+RRE D E QDAIQKLF+DIAPRY +R GGYTR+LK+GPRRGD APM +ELV Sbjct: 61 QAAAFIRREVADEETGQDAIQKLFSDIAPRYEDRQGGYTRVLKVGPRRGDGAPMAIIELV 120 >ref|NP_830038.1| LSU ribosomal protein L17P [Bacillus cereus ATCC 14579] ref|NP_842706.1| ribosomal protein L17 [Bacillus anthracis str. Ames] ref|NP_976466.1| ribosomal protein L17 [Bacillus cereus ATCC 10987] gb|AAP07239.1| LSU ribosomal protein L17P [Bacillus cereus ATCC 14579] gb|AAP24192.1| ribosomal protein L17 [Bacillus anthracis str. Ames] gb|AAS39074.1| ribosomal protein L17 [Bacillus cereus ATCC 10987] Length = 120 Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 83/120 (69%), Positives = 99/120 (82%), Gaps = 2/120 (1%) Query: 1 MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60 MAY+KLGR S+ RKA+ RD+ TDL + ERIQTTE +AKE+RS+ EK+IT K+GDLHARR Sbjct: 1 MAYRKLGRTSAQRKAMLRDLATDLIINERIQTTETRAKELRSVVEKMITLGKRGDLHARR 60 Query: 61 QVAAFVRRETVDGE--QDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELV 118 Q AAF+R E + E QDA+QKLFAD+APRY ER GGYTRI K+GPRRGDAAPMV +ELV Sbjct: 61 QAAAFIRNEVANAETGQDALQKLFADVAPRYAERQGGYTRIAKIGPRRGDAAPMVIIELV 120 >sp|P07843|RL17_BACST 50S ribosomal protein L17 (BL21) Length = 120 Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 81/120 (67%), Positives = 101/120 (84%), Gaps = 2/120 (1%) Query: 1 MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60 M+Y+KLGR +S RKAL RD+ TDL + ERI+TTEA+AKE+R++ EK+IT K+GDLHARR Sbjct: 1 MSYRKLGRTTSQRKALLRDLATDLIINERIETTEARAKELRAVIEKMITLGKRGDLHARR 60 Query: 61 QVAAFVRRETVDGE--QDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELV 118 Q AAF+R+E + E QDA+QKLF+DIAPRY +R GGYTRI+KLGPRRGD APMV +ELV Sbjct: 61 QAAAFIRKEVANSETGQDALQKLFSDIAPRYQDRQGGYTRIMKLGPRRGDGAPMVIIELV 120 >ref|ZP_00182626.1| hypothetical protein Exigu206701 [Exiguobacterium sp. 255-15] Length = 123 Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/123 (69%), Positives = 96/123 (78%), Gaps = 5/123 (4%) Query: 1 MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60 MAY KLGR SS RKAL RD+ TDL + ERIQTTE KAKE+R + EKLIT K+GDLHARR Sbjct: 1 MAYSKLGRTSSQRKALLRDLATDLIINERIQTTEQKAKELRPVVEKLITLGKRGDLHARR 60 Query: 61 QVAAFVRRETVDGE-----QDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYL 115 QVA+FVRRE QDAIQKLFAD+APR+ ER GGYTRI+K+GPRRGD A MV + Sbjct: 61 QVASFVRREAAGQNEAGKTQDAIQKLFADVAPRFAERQGGYTRIMKMGPRRGDGAEMVII 120 Query: 116 ELV 118 ELV Sbjct: 121 ELV 123 >pir||R5BS17 ribosomal protein L17 - Bacillus stearothermophilus Length = 119 Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 80/119 (67%), Positives = 100/119 (84%), Gaps = 2/119 (1%) Query: 2 AYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARRQ 61 +Y+KLGR +S RKAL RD+ TDL + ERI+TTEA+AKE+R++ EK+IT K+GDLHARRQ Sbjct: 1 SYRKLGRTTSQRKALLRDLATDLIINERIETTEARAKELRAVIEKMITLGKRGDLHARRQ 60 Query: 62 VAAFVRRETVDGE--QDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELV 118 AAF+R+E + E QDA+QKLF+DIAPRY +R GGYTRI+KLGPRRGD APMV +ELV Sbjct: 61 AAAFIRKEVANSETGQDALQKLFSDIAPRYQDRQGGYTRIMKLGPRRGDGAPMVIIELV 119 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 151,684,078 Number of extensions: 5004926 Number of successful extensions: 13470 Number of sequences better than 1.0e-05: 580 Number of HSP's gapped: 12950 Number of HSP's successfully gapped: 581 Length of query: 121 Length of database: 757,237,578 Length adjustment: 85 Effective length of query: 36 Effective length of database: 526,454,163 Effective search space: 18952349868 Effective search space used: 18952349868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)