BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0032.p (130 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241035.1| 30S ribosomal protein S9; ribosomal protein S9 ... 214 6e-55 ref|NP_349697.1| Ribosomal protein S9 [Clostridium acetobutylicu... 205 2e-52 ref|NP_388031.1| ribosomal protein S9 [Bacillus subtilis] >gi|25... 203 1e-51 ref|NP_472074.1| ribosomal protein S9 [Listeria innocua] >gi|201... 202 2e-51 ref|NP_830044.1| SSU ribosomal protein S9P [Bacillus cereus ATCC... 199 1e-50 >ref|NP_241035.1| 30S ribosomal protein S9; ribosomal protein S9 (BS10) [Bacillus halodurans] sp|Q9KGD4|RS9_BACHD 30S ribosomal protein S9 pir||A83671 ribosomal protein S9 (BS10) rpsI [imported] - Bacillus halodurans (strain C-125) dbj|BAB03888.1| 30S ribosomal protein S9 [Bacillus halodurans] Length = 130 Score = 214 bits (544), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 108/130 (83%), Positives = 114/130 (87%) Query: 1 MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60 MAQVQYYGTGRRKHSVARVRLVPG+G IVIN R +DEYFG+ETLK+IVKQPL T T G Sbjct: 1 MAQVQYYGTGRRKHSVARVRLVPGDGNIVINGRSLDEYFGLETLKLIVKQPLVETGTEGQ 60 Query: 61 YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120 YDV V GGG +GQAGAIRHGIARALL+VDPEYR SLK AGFLTRD RMKERKKYGLKA Sbjct: 61 YDVRVNVDGGGFTGQAGAIRHGIARALLQVDPEYRPSLKSAGFLTRDARMKERKKYGLKA 120 Query: 121 ARRAPQFSKR 130 ARRAPQFSKR Sbjct: 121 ARRAPQFSKR 130 >ref|NP_349697.1| Ribosomal protein S9 [Clostridium acetobutylicum] sp|Q97EL3|RS9_CLOAB 30S ribosomal protein S9 pir||B97281 ribosomal protein S9 [imported] - Clostridium acetobutylicum gb|AAK81037.1| Ribosomal protein S9 [Clostridium acetobutylicum] Length = 130 Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 99/130 (76%), Positives = 112/130 (86%) Query: 1 MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60 MA+VQY GTGRRK +VARVRLVPGEG++VINKR ++YFG+ETL+ IV QPLNLT T G Sbjct: 1 MAKVQYMGTGRRKEAVARVRLVPGEGKVVINKRSAEDYFGLETLRFIVNQPLNLTGTKGK 60 Query: 61 YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120 +DV+V HGGG +GQAGAIRHGI+RALLK D +G LKKAGFLTRDPRMKERKKYGLK Sbjct: 61 FDVLVNVHGGGFTGQAGAIRHGISRALLKADETLKGELKKAGFLTRDPRMKERKKYGLKK 120 Query: 121 ARRAPQFSKR 130 ARRAPQFSKR Sbjct: 121 ARRAPQFSKR 130 >ref|NP_388031.1| ribosomal protein S9 [Bacillus subtilis] sp|P21470|RS9_BACSU 30S ribosomal protein S9 (BS10) pir||H69699 ribosomal protein S9 [similarity] - Bacillus subtilis dbj|BAA10989.1| ribosomal protein S9 [Bacillus subtilis] emb|CAB11926.1| ribosomal protein S9 [Bacillus subtilis subsp. subtilis str. 168] Length = 130 Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/130 (76%), Positives = 109/130 (83%) Query: 1 MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60 MAQVQYYGTGRRK SVARVRLVPGEGRIV+N RE+ E+ L +KQPL LTET G Sbjct: 1 MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAALIEDIKQPLTLTETAGT 60 Query: 61 YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120 YDV+V HGGG+SGQAGAIRHGIARALL+ DPEYR +LK+AG LTRD RMKERKKYGLK Sbjct: 61 YDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAGLLTRDARMKERKKYGLKG 120 Query: 121 ARRAPQFSKR 130 ARRAPQFSKR Sbjct: 121 ARRAPQFSKR 130 >ref|NP_472074.1| ribosomal protein S9 [Listeria innocua] sp|Q927P3|RS9_LISIN 30S ribosomal protein S9 pir||AC1775 ribosomal protein S9 [imported] - Listeria innocua (strain Clip11262) emb|CAC97971.1| ribosomal protein S9 [Listeria innocua] Length = 130 Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 98/130 (75%), Positives = 111/130 (85%) Query: 1 MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60 MAQVQYYGTGRRK SVARVRLVPG+G+IVIN R+ ++Y L+ ++KQPL TETLGN Sbjct: 1 MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGN 60 Query: 61 YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120 YDV+V HGGG +GQAGAIRHG+ARALL+V PEYR +LK AG LTRDPRMKERKKYGLK Sbjct: 61 YDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKG 120 Query: 121 ARRAPQFSKR 130 ARRAPQFSKR Sbjct: 121 ARRAPQFSKR 130 >ref|NP_830044.1| SSU ribosomal protein S9P [Bacillus cereus ATCC 14579] ref|NP_976472.1| ribosomal protein S9 [Bacillus cereus ATCC 10987] sp|Q81J12|RS9_BACCR 30S ribosomal protein S9 gb|AAP07245.1| SSU ribosomal protein S9P [Bacillus cereus ATCC 14579] gb|AAS39080.1| ribosomal protein S9 [Bacillus cereus ATCC 10987] Length = 130 Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/130 (75%), Positives = 110/130 (84%) Query: 1 MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60 MAQVQYYGTGRRK SVARVRLVPGEGR++IN R+ + Y L+ +VKQPL TETLGN Sbjct: 1 MAQVQYYGTGRRKSSVARVRLVPGEGRVIINGRDFENYIPFAALREVVKQPLVATETLGN 60 Query: 61 YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120 YDV+V +GGG +GQAGAIRHGI+RALLK DPEYR +LK+AG LTRD RMKERKKYGLK Sbjct: 61 YDVLVNVNGGGYTGQAGAIRHGISRALLKADPEYRLTLKRAGLLTRDARMKERKKYGLKG 120 Query: 121 ARRAPQFSKR 130 ARRAPQFSKR Sbjct: 121 ARRAPQFSKR 130 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 187,110,511 Number of extensions: 6926065 Number of successful extensions: 18222 Number of sequences better than 1.0e-05: 599 Number of HSP's gapped: 18149 Number of HSP's successfully gapped: 599 Length of query: 130 Length of database: 757,237,578 Length adjustment: 93 Effective length of query: 37 Effective length of database: 504,733,371 Effective search space: 18675134727 Effective search space used: 18675134727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)