BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0030.p
         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_833432.1| LexA repressor [Bacillus cereus ATCC 14579] >gi...    94   1e-18

>ref|NP_833432.1| LexA repressor [Bacillus cereus ATCC 14579]
 gb|AAP10633.1| LexA repressor [Bacillus cereus ATCC 14579]
          Length = 219

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 71/97 (73%), Gaps = 4/97 (4%)

Query: 1  VQRAEVLKKLIEETGLNTKAFAEKAGLPYTTLRSILMRGVGGASVDNVIKVCRALGITAE 60
          +++AEV+ +LI+E G + +AFAEK GLP TTL+S+L RG+G ASVDNVIKVC+ LGIT +
Sbjct: 1  MKKAEVVTRLIKEAGYSKRAFAEKIGLPPTTLQSMLSRGIGKASVDNVIKVCKGLGITTD 60

Query: 61 DMERLASGTNQEAVTPMLSELSEFEAFLNNPEHGLFF 97
          D+ERLA+   QE  T +  E+S +E   N+  + ++ 
Sbjct: 61 DLERLAT---QEDNT-VKEEVSIYETIQNDQSNIIYI 93


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 184,168,516
Number of extensions: 6644685
Number of successful extensions: 22232
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 22234
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 757,237,578
Length adjustment: 95
Effective length of query: 37
Effective length of database: 499,303,173
Effective search space: 18474217401
Effective search space used: 18474217401
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)